Wall clock time and date at job start Tue Mar 31 2020 22:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47332 * 2 1 4 4 C 1.36037 * 117.00301 * 179.97438 * 3 2 1 5 5 C 1.38801 * 119.89771 * 359.97438 * 4 3 2 6 6 C 1.38119 * 120.41080 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.19745 * 0.02562 * 6 5 4 8 8 N 1.39435 * 120.10566 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99799 * 34.75568 * 8 7 6 10 10 O 1.21284 * 119.99789 * 355.49689 * 9 8 7 11 11 C 1.50699 * 119.99899 * 175.49549 * 9 8 7 12 12 H 1.08997 * 109.47295 * 300.00177 * 11 9 8 13 13 C 1.53004 * 109.47012 * 60.00182 * 11 9 8 14 14 C 1.50695 * 109.47261 * 179.97438 * 11 9 8 15 15 H 1.08006 * 120.00204 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00323 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00275 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99848 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46895 * 89.99865 * 18 16 14 20 20 H 1.48494 * 109.47306 * 210.00070 * 18 16 14 21 21 H 1.48503 * 109.46826 * 330.00125 * 18 16 14 22 22 C 1.40378 * 119.79298 * 0.27188 * 7 6 5 23 23 C 1.47239 * 120.20179 * 179.70510 * 22 7 6 24 24 O 1.21531 * 119.99924 * 90.00313 * 23 22 7 25 25 O 1.34771 * 120.00083 * 270.00174 * 23 22 7 26 26 C 1.45199 * 116.99924 * 180.02562 * 25 23 22 27 27 C 1.38560 * 119.89760 * 179.97438 * 4 3 2 28 28 F 1.35099 * 120.10588 * 0.02562 * 27 4 3 29 29 H 1.09003 * 109.47295 * 300.00440 * 1 2 3 30 30 H 1.09001 * 109.47059 * 60.00154 * 1 2 3 31 31 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47295 * 239.99560 * 2 1 3 33 33 H 1.09001 * 109.47059 * 119.99846 * 2 1 3 34 34 H 1.07999 * 119.78838 * 359.95787 * 5 4 3 35 35 H 1.08001 * 119.90085 * 179.97438 * 6 5 4 36 36 H 0.97000 * 119.99808 * 214.75816 * 8 7 6 37 37 H 1.08997 * 109.47095 * 59.99873 * 13 11 9 38 38 H 1.09006 * 109.46657 * 299.99899 * 13 11 9 39 39 H 1.08995 * 109.46957 * 180.02562 * 13 11 9 40 40 H 0.96999 * 120.00086 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47211 * 180.02562 * 26 25 23 42 42 H 1.09011 * 109.46895 * 299.99687 * 26 25 23 43 43 H 1.08999 * 109.47726 * 59.99698 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3550 1.5255 0.0005 5 6 4.1986 0.4232 0.0016 6 6 5.5694 0.5920 0.0016 7 6 6.1154 1.8671 0.0011 8 7 7.4996 2.0352 0.0006 9 6 8.2839 1.1643 -0.6648 10 8 7.7940 0.1894 -1.1945 11 6 9.7696 1.4019 -0.7508 12 1 9.9571 2.3554 -1.2444 13 6 10.3637 1.4317 0.6589 14 6 10.4110 0.2913 -1.5421 15 1 9.8035 -0.5066 -1.9432 16 6 11.7733 0.2938 -1.7543 17 7 12.3330 -0.6752 -2.4453 18 14 12.8240 1.6741 -1.0613 19 1 13.2872 1.3074 0.3011 20 1 13.9996 1.8914 -1.9421 21 1 12.0202 2.9209 -0.9920 22 6 5.2701 2.9878 0.0064 23 6 5.8400 4.3454 0.0124 24 8 6.0750 4.9105 -1.0375 25 8 6.1011 4.9614 1.1824 26 6 6.6618 6.2989 1.1123 27 6 3.8823 2.8068 0.0000 28 9 3.0594 3.8783 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7803 -0.5725 0.0027 35 1 6.2182 -0.2715 0.0029 36 1 7.8980 2.7789 0.4792 37 1 10.1761 0.4782 1.1525 38 1 9.8998 2.2348 1.2317 39 1 11.4381 1.6040 0.5967 40 1 13.2914 -0.6732 -2.5949 41 1 6.8238 6.6783 2.1212 42 1 7.6124 6.2670 0.5796 43 1 5.9709 6.9554 0.5835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647650080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:02 Heat of formation + Delta-G solvation = -187.623964 kcal Electronic energy + Delta-G solvation = -29891.750694 eV Core-core repulsion = 25430.951867 eV Total energy + Delta-G solvation = -4460.798827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.19595 -42.25875 -41.26349 -40.73900 -38.65602 -37.64677 -35.92647 -35.63817 -33.40741 -32.64519 -32.56634 -29.85274 -28.75196 -27.15259 -26.09055 -25.36016 -23.98673 -23.58710 -22.07814 -21.35563 -20.01180 -19.27625 -18.83990 -18.71350 -18.50369 -17.97124 -17.52058 -17.36897 -17.21710 -16.85093 -16.54740 -16.48085 -16.11022 -15.54523 -15.26843 -14.93156 -14.81721 -14.56106 -14.24546 -14.13928 -14.05701 -13.87238 -13.61910 -13.45025 -13.36197 -13.23577 -12.99761 -12.86034 -12.58961 -12.24213 -12.16772 -11.99436 -11.95358 -11.82097 -11.51367 -11.27165 -11.07590 -10.80875 -10.66535 -10.25868 -9.03404 -8.28411 -6.36939 -0.50803 -0.11891 0.62288 1.32650 1.35907 1.39966 1.50057 1.53823 1.75932 2.07341 2.24386 2.33031 2.86185 3.05109 3.39772 3.58289 3.63184 3.79001 3.91827 4.08659 4.16843 4.19354 4.24030 4.29863 4.34657 4.39832 4.53001 4.57370 4.67315 4.69029 4.73854 4.83590 4.95005 4.96330 4.96822 5.00276 5.07776 5.26066 5.39214 5.44667 5.46490 6.11229 6.14842 6.31389 6.36539 6.77335 7.06798 7.28276 8.88513 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003500 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.109568 B = 7997.141761 C = 9778.662447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.037 3.963 3 O -0.320 6.320 4 C 0.089 3.911 5 C -0.121 4.121 6 C -0.097 4.097 7 C 0.178 3.822 8 N -0.669 5.669 9 C 0.536 3.464 10 O -0.539 6.539 11 C -0.006 4.006 12 H 0.068 0.932 13 C -0.144 4.144 14 C -0.521 4.521 15 H 0.039 0.961 16 C 0.012 3.988 17 N -0.948 5.948 18 Si 0.952 3.048 19 H -0.256 1.256 20 H -0.301 1.301 21 H -0.235 1.235 22 C -0.151 4.151 23 C 0.523 3.477 24 O -0.508 6.508 25 O -0.347 6.347 26 C 0.021 3.979 27 C 0.108 3.892 28 F -0.129 7.129 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.182 0.818 35 H 0.151 0.849 36 H 0.420 0.580 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.143 0.857 42 H 0.070 0.930 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 8.896 13.286 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 O -0.235 6.235 4 C 0.042 3.958 5 C -0.140 4.140 6 C -0.118 4.118 7 C 0.082 3.918 8 N -0.316 5.316 9 C 0.326 3.674 10 O -0.414 6.414 11 C -0.027 4.027 12 H 0.086 0.914 13 C -0.201 4.201 14 C -0.560 4.560 15 H 0.057 0.943 16 C -0.185 4.185 17 N -0.587 5.587 18 Si 0.778 3.222 19 H -0.181 1.181 20 H -0.229 1.229 21 H -0.159 1.159 22 C -0.156 4.156 23 C 0.365 3.635 24 O -0.396 6.396 25 O -0.262 6.262 26 C -0.071 4.071 27 C 0.087 3.913 28 F -0.107 7.107 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.199 0.801 35 H 0.168 0.832 36 H 0.258 0.742 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.161 0.839 42 H 0.089 0.911 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.920 8.512 12.514 25.017 hybrid contribution 1.008 0.734 -0.273 1.277 sum -18.912 9.246 12.240 24.351 Atomic orbital electron populations 1.21814 0.91210 1.04392 1.03218 1.23300 0.97188 0.79872 1.03298 1.86149 1.16278 1.32420 1.88628 1.18552 0.84746 0.91410 1.01135 1.21492 0.92034 0.99400 1.01037 1.21259 0.95636 0.96098 0.98787 1.17384 0.83225 0.92063 0.99164 1.43561 1.03552 1.31779 1.52668 1.21339 0.90040 0.80973 0.75018 1.90571 1.75744 1.29422 1.45615 1.19294 0.87329 0.99054 0.97041 0.91444 1.22072 1.00430 1.02541 0.95066 1.21014 0.93091 1.08409 1.33444 0.94253 1.25934 0.99078 0.98533 0.94993 1.70050 1.11899 1.34912 1.41885 0.85811 0.77836 0.80496 0.78106 1.18102 1.22927 1.15851 1.18545 0.91756 0.90614 1.14686 1.20752 0.74565 0.85625 0.82563 1.90902 1.48715 1.66088 1.33922 1.86679 1.74359 1.33356 1.31842 1.23790 0.98757 0.77947 1.06646 1.16418 0.85009 0.82209 1.07634 1.91497 1.71249 1.53903 1.94058 0.91636 0.92121 0.87786 0.90525 0.89665 0.80077 0.83183 0.74164 0.92359 0.89841 0.93254 0.92311 0.83904 0.91148 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.04 0.49 5.46 71.98 0.39 0.89 16 3 O -0.32 -7.00 9.99 -93.98 -0.94 -7.93 16 4 C 0.09 2.18 6.68 22.48 0.15 2.33 16 5 C -0.12 -2.70 9.02 22.38 0.20 -2.50 16 6 C -0.10 -2.81 8.67 22.35 0.19 -2.62 16 7 C 0.18 5.55 6.32 38.57 0.24 5.79 16 8 N -0.67 -21.69 4.95 -302.85 -1.50 -23.19 16 9 C 0.54 22.27 6.99 87.66 0.61 22.88 16 10 O -0.54 -26.12 12.87 -3.04 -0.04 -26.16 16 11 C -0.01 -0.25 2.24 -12.29 -0.03 -0.27 16 12 H 0.07 2.85 7.20 -2.39 -0.02 2.83 16 13 C -0.14 -5.13 8.57 71.98 0.62 -4.52 16 14 C -0.52 -29.85 8.95 25.60 0.23 -29.62 16 15 H 0.04 2.63 7.00 -2.91 -0.02 2.61 16 16 C 0.01 0.68 5.45 84.65 0.46 1.14 16 17 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 18 Si 0.95 41.84 24.37 68.60 1.67 43.51 16 19 H -0.26 -10.34 6.87 99.48 0.68 -9.65 16 20 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 21 H -0.24 -9.06 6.53 99.48 0.65 -8.41 16 22 C -0.15 -4.54 5.77 -19.97 -0.12 -4.66 16 23 C 0.52 15.70 6.09 70.19 0.43 16.12 16 24 O -0.51 -17.97 16.90 19.74 0.33 -17.64 16 25 O -0.35 -8.22 10.58 -56.82 -0.60 -8.82 16 26 C 0.02 0.34 10.57 113.37 1.20 1.54 16 27 C 0.11 3.10 7.30 22.76 0.17 3.26 16 28 F -0.13 -3.83 16.67 44.97 0.75 -3.08 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 33 H 0.09 0.82 7.65 -2.39 -0.02 0.80 16 34 H 0.18 2.69 6.26 -2.91 -0.02 2.68 16 35 H 0.15 4.82 6.19 -2.91 -0.02 4.80 16 36 H 0.42 11.19 7.46 -92.71 -0.69 10.50 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.15 7.47 -2.38 -0.02 2.13 16 39 H 0.05 1.81 3.27 -2.39 -0.01 1.81 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -78.80 364.58 5.77 -73.02 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.31 Total: 20.20 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.49 Total: 9.03 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -1.20 Total: -82.13 kcal Atomic # 8 Polarization: -59.31 SS G_CDS: -1.25 Total: -60.55 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.75 Total: -3.08 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.67 Total: 43.51 kcal Total: -78.80 5.77 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647650080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.601 kcal (2) G-P(sol) polarization free energy of solvation -78.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds