Wall clock time and date at job start Tue Mar 31 2020 23:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00235 * 2 1 4 4 O 1.20828 * 120.00004 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00083 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47157 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47130 * 180.02562 * 6 5 3 8 8 C 1.36936 * 119.99939 * 275.30549 * 7 6 5 9 9 H 1.08003 * 120.00038 * 37.58480 * 8 7 6 10 10 C 1.38806 * 120.00183 * 217.57443 * 8 7 6 11 11 N 1.31621 * 120.00252 * 21.43155 * 10 8 7 12 12 Si 1.86806 * 120.00474 * 201.42616 * 10 8 7 13 13 H 1.48506 * 109.46959 * 90.00074 * 12 10 8 14 14 H 1.48496 * 109.47376 * 210.00541 * 12 10 8 15 15 H 1.48502 * 109.46876 * 330.00841 * 12 10 8 16 16 C 1.46500 * 120.00215 * 95.30579 * 7 6 5 17 17 C 1.53000 * 109.47145 * 270.00030 * 16 7 6 18 18 S 1.81402 * 109.46890 * 179.97438 * 17 16 7 19 19 C 1.76198 * 102.99953 * 179.97438 * 18 17 16 20 20 C 1.38919 * 120.02654 * 179.97438 * 19 18 17 21 21 C 1.38096 * 119.97744 * 180.29844 * 20 19 18 22 22 C 1.38721 * 120.01965 * 359.45056 * 21 20 19 23 23 O 1.36006 * 119.97264 * 180.25211 * 22 21 20 24 24 C 1.42907 * 116.99785 * 0.29817 * 23 22 21 25 25 C 1.38712 * 120.04897 * 0.55438 * 22 21 20 26 26 C 1.38085 * 120.02395 * 359.72015 * 25 22 21 27 27 H 1.08997 * 109.47339 * 300.00386 * 1 2 3 28 28 H 1.09007 * 109.46726 * 60.00092 * 1 2 3 29 29 H 1.08996 * 109.47765 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46884 * 59.99608 * 5 3 2 31 31 H 1.08999 * 109.46826 * 299.99887 * 5 3 2 32 32 H 1.09000 * 109.47164 * 59.99454 * 6 5 3 33 33 H 1.09005 * 109.46831 * 299.99948 * 6 5 3 34 34 H 0.97002 * 120.00798 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47158 * 150.00047 * 16 7 6 36 36 H 1.09006 * 109.47190 * 30.00245 * 16 7 6 37 37 H 1.08997 * 109.47001 * 60.00419 * 17 16 7 38 38 H 1.08993 * 109.47167 * 300.00021 * 17 16 7 39 39 H 1.07997 * 120.01338 * 0.02880 * 20 19 18 40 40 H 1.07993 * 119.98784 * 179.70246 * 21 20 19 41 41 H 1.08995 * 109.47238 * 299.99535 * 24 23 22 42 42 H 1.09000 * 109.46871 * 60.00165 * 24 23 22 43 43 H 1.09004 * 109.46594 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.98388 * 179.69927 * 25 22 21 45 45 H 1.08002 * 120.00809 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1527 2.7445 1.1818 9 1 5.8151 2.0800 1.9635 10 6 7.2856 3.5230 1.3740 11 7 7.4697 4.6071 0.6506 12 14 8.5492 3.0325 2.6595 13 1 9.5669 2.1459 2.0401 14 1 9.2117 4.2500 3.1923 15 1 7.8733 2.3114 3.7679 16 6 6.1885 2.9745 -1.2622 17 6 6.5161 1.5945 -1.8359 18 16 7.4136 1.7877 -3.4005 19 6 7.7000 0.1228 -3.9013 20 6 8.3781 -0.1402 -5.0848 21 6 8.5966 -1.4454 -5.4795 22 6 8.1492 -2.4937 -4.6887 23 8 8.3695 -3.7788 -5.0757 24 6 9.0733 -3.9748 -6.3039 25 6 7.4720 -2.2322 -3.5068 26 6 7.2474 -0.9278 -3.1131 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7808 0.8908 32 1 3.6101 3.2359 0.8910 33 1 3.6108 3.2363 -0.8890 34 1 8.2612 5.1515 0.7851 35 1 7.1135 3.5232 -1.0847 36 1 5.5698 3.5251 -1.9709 37 1 5.5912 1.0459 -2.0134 38 1 7.1348 1.0440 -1.1273 39 1 8.7305 0.6758 -5.6983 40 1 9.1195 -1.6500 -6.4019 41 1 8.5156 -3.5148 -7.1197 42 1 10.0599 -3.5167 -6.2344 43 1 9.1815 -5.0427 -6.4941 44 1 7.1199 -3.0491 -2.8944 45 1 6.7197 -0.7245 -2.1930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652986479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:02 Heat of formation + Delta-G solvation = -81.052783 kcal Electronic energy + Delta-G solvation = -26486.996379 eV Core-core repulsion = 22597.032001 eV Total energy + Delta-G solvation = -3889.964378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.15966 -40.05289 -37.35246 -36.67979 -35.95675 -32.21908 -31.48724 -30.93826 -30.22256 -29.00940 -27.43929 -27.39554 -24.80374 -23.49652 -22.37862 -22.18138 -20.78700 -20.03557 -18.30852 -17.42160 -17.10467 -16.81552 -16.28105 -16.26108 -16.13812 -15.86113 -14.96031 -14.65832 -14.57967 -14.25727 -13.86843 -13.83029 -13.52192 -13.42819 -13.17345 -12.99427 -12.66236 -12.58887 -12.32143 -12.12263 -11.92417 -11.53811 -11.40132 -11.26487 -11.13621 -10.98526 -10.89421 -10.69226 -10.62986 -10.22772 -10.16275 -10.00421 -9.91368 -9.63150 -9.06295 -8.95333 -8.62973 -6.90386 -6.81392 -5.95527 -3.55583 1.29288 1.34370 1.95571 2.51374 2.93698 2.99331 3.17639 3.30677 3.38929 3.39143 3.69327 4.37305 4.70095 4.80116 4.92945 4.93521 5.07908 5.13599 5.17497 5.19560 5.22206 5.29961 5.38609 5.44377 5.51465 5.56683 5.59252 5.74007 5.75849 5.96000 6.00111 6.06007 6.17150 6.26584 6.33966 6.38096 6.54776 6.62397 6.64118 6.77865 6.92728 7.29259 7.47316 7.69046 8.02873 8.34475 8.99675 9.61077 10.17609 11.05861 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007256 B = 0.003575 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.737985 B = 7829.673368 C =10411.296610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.462 3.538 4 O -0.511 6.511 5 C -0.134 4.134 6 C 0.158 3.842 7 N -0.569 5.569 8 C -0.278 4.278 9 H 0.065 0.935 10 C 0.022 3.978 11 N -0.877 5.877 12 Si 0.898 3.102 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.158 3.842 17 C -0.112 4.112 18 S -0.134 6.134 19 C -0.106 4.106 20 C -0.068 4.068 21 C -0.190 4.190 22 C 0.108 3.892 23 O -0.320 6.320 24 C 0.028 3.972 25 C -0.130 4.130 26 C -0.094 4.094 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.259 0.741 35 H 0.107 0.893 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 -13.799 -10.942 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.305 3.695 4 O -0.399 6.399 5 C -0.175 4.175 6 C 0.031 3.969 7 N -0.288 5.288 8 C -0.407 4.407 9 H 0.083 0.917 10 C -0.180 4.180 11 N -0.518 5.518 12 Si 0.727 3.273 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.201 1.201 16 C 0.030 3.970 17 C -0.263 4.263 18 S 0.109 5.891 19 C -0.219 4.219 20 C -0.092 4.092 21 C -0.211 4.211 22 C 0.061 3.939 23 O -0.234 6.234 24 C -0.067 4.067 25 C -0.150 4.150 26 C -0.118 4.118 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.149 0.851 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.974 -12.348 -11.282 16.842 hybrid contribution 0.293 -1.506 0.970 1.815 sum -1.681 -13.854 -10.312 17.353 Atomic orbital electron populations 1.23171 0.77386 1.03097 1.02290 1.86563 1.22765 1.34572 1.84484 1.24388 0.92722 0.80832 0.71512 1.90635 1.67443 1.36327 1.45472 1.22443 0.84885 1.05078 1.05086 1.20713 0.85468 0.89666 1.01098 1.43757 0.99023 1.83624 1.02406 1.19023 1.08547 1.19187 0.93957 0.91712 1.25220 1.00769 0.94121 0.97926 1.69987 1.27650 1.12218 1.41898 0.86378 0.81741 0.77872 0.81323 1.20975 1.21513 1.20078 1.20753 1.00473 0.89922 0.85826 1.24909 1.00234 1.07596 0.93540 1.85526 1.71580 1.03169 1.28781 1.21841 1.03486 0.97923 0.98645 1.20558 0.97636 0.96047 0.94986 1.21103 1.06087 0.92542 1.01338 1.18958 0.97345 0.82955 0.94635 1.86077 1.73116 1.23870 1.40324 1.23015 0.95898 1.02961 0.84826 1.20316 1.02035 0.96940 0.95720 1.21142 0.99830 0.91229 0.99641 0.92153 0.92212 0.88622 0.88808 0.87857 0.92133 0.93318 0.93100 0.87541 0.94399 0.91296 0.89625 0.85367 0.85384 0.92765 0.92749 0.88470 0.85099 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.31 10.56 -39.25 -0.41 -5.73 16 3 C 0.46 7.65 7.96 36.01 0.29 7.94 16 4 O -0.51 -9.69 15.73 -18.75 -0.29 -9.99 16 5 C -0.13 -2.24 6.11 -27.88 -0.17 -2.41 16 6 C 0.16 3.18 5.01 -4.04 -0.02 3.16 16 7 N -0.57 -12.97 2.43 -173.24 -0.42 -13.39 16 8 C -0.28 -6.98 9.45 -15.06 -0.14 -7.12 16 9 H 0.07 1.61 7.92 -52.48 -0.42 1.20 16 10 C 0.02 0.57 4.95 -17.43 -0.09 0.48 16 11 N -0.88 -23.98 11.47 55.49 0.64 -23.34 16 12 Si 0.90 20.54 29.60 -169.99 -5.03 15.50 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.16 3.43 5.34 -4.04 -0.02 3.41 16 17 C -0.11 -2.05 4.66 37.16 0.17 -1.88 16 18 S -0.13 -2.30 21.92 -107.50 -2.36 -4.66 16 19 C -0.11 -1.63 6.11 -39.08 -0.24 -1.87 16 20 C -0.07 -0.92 9.79 -39.38 -0.39 -1.30 16 21 C -0.19 -2.28 9.03 -39.45 -0.36 -2.64 16 22 C 0.11 1.40 6.69 -39.23 -0.26 1.14 16 23 O -0.32 -3.73 10.50 -19.76 -0.21 -3.94 16 24 C 0.03 0.21 9.81 101.05 0.99 1.20 16 25 C -0.13 -1.75 9.98 -39.46 -0.39 -2.14 16 26 C -0.09 -1.39 9.36 -39.38 -0.37 -1.76 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.45 6.64 -51.93 -0.34 1.11 16 31 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 33 H 0.05 0.97 7.79 -51.93 -0.40 0.57 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.11 2.67 5.52 -51.93 -0.29 2.38 16 36 H 0.04 0.80 7.86 -51.93 -0.41 0.40 16 37 H 0.07 1.16 6.25 -51.93 -0.32 0.84 16 38 H 0.09 1.66 7.74 -51.93 -0.40 1.26 16 39 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 41 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 42 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.13 1.94 5.87 -52.49 -0.31 1.63 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -29.62 388.68 -8.69 -38.32 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.53 Total: 3.71 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 0.07 Total: -2.35 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.21 Total: -36.73 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.92 Total: -19.65 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.36 Total: -4.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.62 -8.69 -38.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652986479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.736 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds