Wall clock time and date at job start Tue Mar 31 2020 23:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00235 * 2 1 4 4 O 1.20828 * 120.00004 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00083 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47157 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47130 * 180.02562 * 6 5 3 8 8 C 1.36936 * 119.99939 * 275.30549 * 7 6 5 9 9 H 1.08003 * 120.00038 * 37.58480 * 8 7 6 10 10 C 1.38806 * 120.00183 * 217.57443 * 8 7 6 11 11 N 1.31621 * 120.00252 * 21.43155 * 10 8 7 12 12 Si 1.86806 * 120.00474 * 201.42616 * 10 8 7 13 13 H 1.48506 * 109.46959 * 90.00074 * 12 10 8 14 14 H 1.48496 * 109.47376 * 210.00541 * 12 10 8 15 15 H 1.48502 * 109.46876 * 330.00841 * 12 10 8 16 16 C 1.46500 * 120.00215 * 95.30579 * 7 6 5 17 17 C 1.53000 * 109.47145 * 270.00030 * 16 7 6 18 18 S 1.81402 * 109.46890 * 179.97438 * 17 16 7 19 19 C 1.76198 * 102.99953 * 179.97438 * 18 17 16 20 20 C 1.38919 * 120.02654 * 179.97438 * 19 18 17 21 21 C 1.38096 * 119.97744 * 180.29844 * 20 19 18 22 22 C 1.38721 * 120.01965 * 359.45056 * 21 20 19 23 23 O 1.36006 * 119.97264 * 180.25211 * 22 21 20 24 24 C 1.42907 * 116.99785 * 0.29817 * 23 22 21 25 25 C 1.38712 * 120.04897 * 0.55438 * 22 21 20 26 26 C 1.38085 * 120.02395 * 359.72015 * 25 22 21 27 27 H 1.08997 * 109.47339 * 300.00386 * 1 2 3 28 28 H 1.09007 * 109.46726 * 60.00092 * 1 2 3 29 29 H 1.08996 * 109.47765 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46884 * 59.99608 * 5 3 2 31 31 H 1.08999 * 109.46826 * 299.99887 * 5 3 2 32 32 H 1.09000 * 109.47164 * 59.99454 * 6 5 3 33 33 H 1.09005 * 109.46831 * 299.99948 * 6 5 3 34 34 H 0.97002 * 120.00798 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47158 * 150.00047 * 16 7 6 36 36 H 1.09006 * 109.47190 * 30.00245 * 16 7 6 37 37 H 1.08997 * 109.47001 * 60.00419 * 17 16 7 38 38 H 1.08993 * 109.47167 * 300.00021 * 17 16 7 39 39 H 1.07997 * 120.01338 * 0.02880 * 20 19 18 40 40 H 1.07993 * 119.98784 * 179.70246 * 21 20 19 41 41 H 1.08995 * 109.47238 * 299.99535 * 24 23 22 42 42 H 1.09000 * 109.46871 * 60.00165 * 24 23 22 43 43 H 1.09004 * 109.46594 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.98388 * 179.69927 * 25 22 21 45 45 H 1.08002 * 120.00809 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1527 2.7445 1.1818 9 1 5.8151 2.0800 1.9635 10 6 7.2856 3.5230 1.3740 11 7 7.4697 4.6071 0.6506 12 14 8.5492 3.0325 2.6595 13 1 9.5669 2.1459 2.0401 14 1 9.2117 4.2500 3.1923 15 1 7.8733 2.3114 3.7679 16 6 6.1885 2.9745 -1.2622 17 6 6.5161 1.5945 -1.8359 18 16 7.4136 1.7877 -3.4005 19 6 7.7000 0.1228 -3.9013 20 6 8.3781 -0.1402 -5.0848 21 6 8.5966 -1.4454 -5.4795 22 6 8.1492 -2.4937 -4.6887 23 8 8.3695 -3.7788 -5.0757 24 6 9.0733 -3.9748 -6.3039 25 6 7.4720 -2.2322 -3.5068 26 6 7.2474 -0.9278 -3.1131 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7808 0.8908 32 1 3.6101 3.2359 0.8910 33 1 3.6108 3.2363 -0.8890 34 1 8.2612 5.1515 0.7851 35 1 7.1135 3.5232 -1.0847 36 1 5.5698 3.5251 -1.9709 37 1 5.5912 1.0459 -2.0134 38 1 7.1348 1.0440 -1.1273 39 1 8.7305 0.6758 -5.6983 40 1 9.1195 -1.6500 -6.4019 41 1 8.5156 -3.5148 -7.1197 42 1 10.0599 -3.5167 -6.2344 43 1 9.1815 -5.0427 -6.4941 44 1 7.1199 -3.0491 -2.8944 45 1 6.7197 -0.7245 -2.1930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652986479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:02 Heat of formation + Delta-G solvation = -95.579836 kcal Electronic energy + Delta-G solvation = -26487.626320 eV Core-core repulsion = 22597.032001 eV Total energy + Delta-G solvation = -3890.594318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.44973 -40.97978 -38.31480 -38.22563 -37.38910 -34.00786 -32.93571 -32.10956 -31.27976 -30.52977 -28.52561 -28.12035 -26.56535 -24.87786 -23.58650 -23.16474 -22.36628 -21.50047 -19.27043 -18.89965 -18.47627 -18.16694 -17.55398 -17.48899 -17.13540 -16.74526 -16.61744 -16.11554 -15.93283 -15.62187 -15.13839 -14.83900 -14.75656 -14.60213 -14.54669 -14.25509 -14.04751 -13.79896 -13.61475 -13.20326 -13.04741 -12.99357 -12.76109 -12.66557 -12.58805 -12.37880 -12.23722 -12.00053 -11.90699 -11.79857 -11.76249 -11.59870 -11.48609 -11.04314 -10.56699 -10.08330 -10.03009 -8.69255 -8.15775 -7.89110 -5.52837 0.25382 0.30665 0.64262 1.19503 1.47798 1.51171 1.57758 1.61204 1.80511 2.38381 2.50369 2.66059 3.22327 3.63719 3.78841 3.87657 3.95611 4.08907 4.22022 4.22696 4.24693 4.33078 4.33415 4.34726 4.43277 4.45997 4.48055 4.54191 4.64074 4.71921 4.75695 4.78659 4.97597 4.99980 5.05045 5.09481 5.24401 5.27053 5.31918 5.41204 5.63054 5.63679 5.71656 6.41497 6.42217 6.75651 7.09506 7.73885 8.28217 9.09431 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.007256 B = 0.003575 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3857.737985 B = 7829.673368 C =10411.296610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.470 3.530 4 O -0.540 6.540 5 C -0.121 4.121 6 C 0.162 3.838 7 N -0.584 5.584 8 C -0.276 4.276 9 H 0.067 0.933 10 C -0.026 4.026 11 N -0.912 5.912 12 Si 0.955 3.045 13 H -0.284 1.284 14 H -0.296 1.296 15 H -0.266 1.266 16 C 0.165 3.835 17 C -0.094 4.094 18 S -0.152 6.152 19 C -0.126 4.126 20 C -0.070 4.070 21 C -0.185 4.185 22 C 0.111 3.889 23 O -0.333 6.333 24 C 0.016 3.984 25 C -0.140 4.140 26 C -0.103 4.103 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.141 0.859 40 H 0.161 0.839 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.144 0.856 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -16.790 -12.234 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.314 3.686 4 O -0.430 6.430 5 C -0.161 4.161 6 C 0.035 3.965 7 N -0.304 5.304 8 C -0.406 4.406 9 H 0.085 0.915 10 C -0.225 4.225 11 N -0.554 5.554 12 Si 0.783 3.217 13 H -0.211 1.211 14 H -0.222 1.222 15 H -0.190 1.190 16 C 0.037 3.963 17 C -0.244 4.244 18 S 0.091 5.909 19 C -0.239 4.239 20 C -0.094 4.094 21 C -0.205 4.205 22 C 0.064 3.936 23 O -0.247 6.247 24 C -0.078 4.078 25 C -0.160 4.160 26 C -0.126 4.126 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.151 0.849 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.159 0.841 40 H 0.178 0.822 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.161 0.839 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.956 -15.399 -12.583 19.982 hybrid contribution 0.225 -0.733 1.223 1.444 sum -1.731 -16.132 -11.360 19.807 Atomic orbital electron populations 1.23538 0.75063 1.05632 1.02421 1.86528 1.24943 1.32940 1.83815 1.24151 0.92493 0.81065 0.70842 1.90631 1.67999 1.37409 1.46989 1.22095 0.85546 1.02342 1.06114 1.20620 0.84084 0.91929 0.99866 1.43881 0.99987 1.84303 1.02247 1.19267 1.08432 1.18258 0.94685 0.91547 1.25865 1.02521 0.94222 0.99859 1.70114 1.27998 1.13460 1.43824 0.85481 0.79611 0.77091 0.79566 1.21107 1.22224 1.19030 1.20501 0.98751 0.91447 0.85555 1.24415 1.00941 1.05049 0.94010 1.85449 1.72124 1.05610 1.27715 1.21812 1.05683 0.96329 1.00061 1.20785 0.96969 0.97291 0.94350 1.21398 1.05408 0.91462 1.02202 1.19112 0.96334 0.83889 0.94290 1.86076 1.73444 1.22944 1.42212 1.23369 0.96125 1.04843 0.83442 1.20489 1.02348 0.96718 0.96487 1.21165 1.00144 0.91738 0.99598 0.92166 0.92044 0.84909 0.87215 0.87344 0.94335 0.93627 0.93671 0.90790 0.94707 0.89736 0.90896 0.84128 0.82200 0.91524 0.91714 0.86252 0.83852 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -9.89 10.56 -51.37 -0.54 -10.43 16 3 C 0.47 15.15 7.96 71.24 0.57 15.71 16 4 O -0.54 -20.38 15.73 21.96 0.35 -20.04 16 5 C -0.12 -3.95 6.11 29.85 0.18 -3.77 16 6 C 0.16 6.63 5.01 86.38 0.43 7.06 16 7 N -0.58 -27.21 2.43 -702.00 -1.71 -28.92 16 8 C -0.28 -14.13 9.45 84.03 0.79 -13.34 16 9 H 0.07 3.32 7.92 -2.91 -0.02 3.29 16 10 C -0.03 -1.37 4.95 84.86 0.42 -0.95 16 11 N -0.91 -51.58 11.47 21.65 0.25 -51.34 16 12 Si 0.95 42.92 29.60 68.60 2.03 44.95 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 16 C 0.17 7.39 5.34 86.38 0.46 7.85 16 17 C -0.09 -3.47 4.66 71.98 0.34 -3.13 16 18 S -0.15 -5.22 21.92 -56.49 -1.24 -6.46 16 19 C -0.13 -3.77 6.11 22.60 0.14 -3.64 16 20 C -0.07 -1.76 9.79 22.40 0.22 -1.54 16 21 C -0.18 -3.89 9.03 22.35 0.20 -3.69 16 22 C 0.11 2.59 6.69 22.50 0.15 2.74 16 23 O -0.33 -6.78 10.50 -93.62 -0.98 -7.76 16 24 C 0.02 0.18 9.81 113.37 1.11 1.29 16 25 C -0.14 -3.55 9.98 22.35 0.22 -3.32 16 26 C -0.10 -2.93 9.36 22.40 0.21 -2.72 16 27 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 28 H 0.06 1.20 8.13 -2.38 -0.02 1.18 16 29 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 3.25 6.64 -2.39 -0.02 3.24 16 31 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 32 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 33 H 0.05 1.87 7.79 -2.38 -0.02 1.85 16 34 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.07 3.87 5.52 -2.39 -0.01 3.86 16 36 H 0.03 1.53 7.86 -2.38 -0.02 1.51 16 37 H 0.08 2.82 6.25 -2.39 -0.01 2.81 16 38 H 0.07 2.88 7.74 -2.39 -0.02 2.86 16 39 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.16 2.27 6.29 -2.91 -0.02 2.25 16 41 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 42 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 43 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 45 H 0.13 3.71 5.87 -2.91 -0.02 3.69 16 Total: -1.00 -65.17 388.68 5.79 -59.39 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.99 Total: 20.33 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.64 Total: 0.27 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -1.46 Total: -80.26 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.18 Total: -38.23 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -5.22 SS G_CDS: -1.24 Total: -6.46 kcal Total: -65.17 5.79 -59.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652986479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.194 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds