Wall clock time and date at job start Tue Mar 31 2020 23:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00137 * 2 1 4 4 C 1.38762 * 120.17171 * 359.97019 * 3 2 1 5 5 C 1.37835 * 119.71620 * 180.14578 * 4 3 2 6 6 C 1.38963 * 120.62610 * 359.97438 * 5 4 3 7 7 C 1.37714 * 119.76221 * 359.81394 * 6 5 4 8 8 C 1.38417 * 120.18025 * 180.02562 * 3 2 1 9 9 C 1.50648 * 122.56593 * 180.33301 * 7 6 5 10 10 H 1.08999 * 109.22367 * 102.67149 * 9 7 6 11 11 N 1.46500 * 109.25140 * 222.11931 * 9 7 6 12 12 S 1.65598 * 120.00071 * 216.79234 * 11 9 7 13 13 O 1.42100 * 104.27977 * 307.02101 * 12 11 9 14 14 O 1.42101 * 104.27988 * 179.16037 * 12 11 9 15 15 C 1.81405 * 104.44824 * 63.08893 * 12 11 9 16 16 C 1.53004 * 109.47114 * 175.04826 * 15 12 11 17 17 C 1.50696 * 109.46695 * 180.02562 * 16 15 12 18 18 H 1.07993 * 120.00723 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99760 * 179.72494 * 17 16 15 20 20 N 1.31515 * 119.99618 * 0.27187 * 19 17 16 21 21 Si 1.86800 * 120.00099 * 180.27516 * 19 17 16 22 22 H 1.48498 * 109.47251 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46975 * 119.99741 * 21 19 17 24 24 H 1.48502 * 109.46815 * 239.99782 * 21 19 17 25 25 C 1.52733 * 110.58292 * 342.40477 * 9 7 6 26 26 C 1.53330 * 108.36189 * 51.11053 * 25 9 7 27 27 C 1.50651 * 117.69233 * 179.75114 * 6 5 4 28 28 H 1.08995 * 109.46910 * 60.00437 * 1 2 3 29 29 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47404 * 300.00368 * 1 2 3 31 31 H 1.07997 * 120.14718 * 0.17414 * 4 3 2 32 32 H 1.07994 * 119.69042 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.74695 * 359.97265 * 8 3 2 34 34 H 0.97001 * 119.99950 * 36.79506 * 11 9 7 35 35 H 1.08998 * 109.46782 * 55.04584 * 15 12 11 36 36 H 1.08999 * 109.46901 * 295.04703 * 15 12 11 37 37 H 1.08991 * 109.46968 * 59.99796 * 16 15 12 38 38 H 1.09003 * 109.46416 * 299.99772 * 16 15 12 39 39 H 0.97004 * 119.99631 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.68067 * 170.82483 * 25 9 7 41 41 H 1.08994 * 109.68675 * 291.34941 * 25 9 7 42 42 H 1.08992 * 109.68271 * 49.78149 * 26 25 9 43 43 H 1.09004 * 109.67824 * 170.33657 * 26 25 9 44 44 H 1.09001 * 109.24900 * 42.24030 * 27 6 5 45 45 H 1.08996 * 109.25082 * 282.81712 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2937 2.3769 -0.0006 5 6 1.9293 3.6000 -0.0037 6 6 3.3168 3.6768 -0.0056 7 6 4.0654 2.5210 -0.0005 8 6 3.4280 1.2876 -0.0005 9 6 5.5719 2.5306 0.0051 10 1 5.9284 2.3090 1.0111 11 7 6.0649 1.5060 -0.9187 12 16 7.4263 0.6404 -0.5451 13 8 8.4046 1.6311 -0.2609 14 8 7.5847 -0.2530 -1.6387 15 6 6.9853 -0.2691 0.9613 16 6 8.1301 -1.2097 1.3427 17 6 7.7633 -1.9657 2.5937 18 1 6.8094 -1.7923 3.0694 19 6 8.6436 -2.8825 3.1282 20 7 9.8055 -3.0933 2.5492 21 14 8.1858 -3.8252 4.6745 22 1 6.8346 -3.4075 5.1272 23 1 8.1828 -5.2815 4.3838 24 1 9.1765 -3.5356 5.7422 25 6 6.1017 3.8961 -0.4277 26 6 5.4062 4.9729 0.4135 27 6 3.9420 5.0474 -0.0147 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2149 2.3264 0.0017 32 1 1.3434 4.5072 -0.0037 33 1 4.0151 0.3811 -0.0005 34 1 5.5940 1.3347 -1.7492 35 1 6.0810 -0.8509 0.7826 36 1 6.8089 0.4365 1.7731 37 1 9.0342 -0.6278 1.5213 38 1 8.3064 -1.9152 0.5308 39 1 10.4246 -3.7386 2.9250 40 1 7.1784 3.9408 -0.2639 41 1 5.8840 4.0566 -1.4835 42 1 5.4670 4.7099 1.4695 43 1 5.8870 5.9368 0.2464 44 1 3.3988 5.6948 0.6737 45 1 3.8825 5.4629 -1.0206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654680298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:28 Heat of formation + Delta-G solvation = -104.234676 kcal Electronic energy + Delta-G solvation = -27776.431370 eV Core-core repulsion = 23885.461749 eV Total energy + Delta-G solvation = -3890.969620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70900 -38.92415 -36.60105 -35.94101 -35.39559 -34.41485 -33.87461 -31.16981 -31.06860 -29.91230 -28.58865 -26.93500 -25.59362 -23.71048 -22.57652 -22.21892 -21.68481 -19.74733 -18.94561 -18.18684 -17.39878 -16.63910 -16.42435 -16.23739 -15.90425 -15.61244 -15.38330 -14.88951 -14.71578 -14.52382 -14.33733 -13.85253 -13.64278 -13.37147 -13.24594 -13.00013 -12.73783 -12.51475 -12.35332 -12.18215 -11.73880 -11.70966 -11.57806 -11.49087 -11.30086 -11.20306 -11.08363 -11.05759 -10.94013 -10.84827 -10.48677 -10.36209 -10.34801 -9.83185 -9.53241 -9.08548 -8.90479 -8.48542 -8.20550 -6.10533 -4.15660 0.76988 1.11595 1.24651 3.06926 3.13260 3.26959 3.34238 3.37997 3.54385 4.21345 4.37598 4.41735 4.51354 4.64373 4.69606 4.77932 4.85650 4.87659 4.89729 4.93463 5.01767 5.05319 5.22611 5.24950 5.36254 5.38306 5.44849 5.53754 5.68469 5.70873 5.74212 5.75052 5.84817 5.93665 6.11495 6.16051 6.24126 6.26218 6.42421 6.51066 6.60537 7.11554 7.22945 7.32139 7.38573 7.83127 8.19799 8.88074 9.49085 11.00585 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.003714 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.868016 B = 7537.704848 C = 9084.207213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.122 3.878 4 C -0.203 4.203 5 C -0.085 4.085 6 C -0.102 4.102 7 C -0.047 4.047 8 C -0.138 4.138 9 C 0.197 3.803 10 H 0.098 0.902 11 N -1.121 6.121 12 S 2.589 3.411 13 O -0.964 6.964 14 O -0.965 6.965 15 C -0.592 4.592 16 C 0.029 3.971 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.136 4.136 26 C -0.120 4.120 27 C -0.077 4.077 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.414 0.586 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.031 15.928 -5.804 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.077 3.923 4 C -0.221 4.221 5 C -0.103 4.103 6 C -0.103 4.103 7 C -0.048 4.048 8 C -0.157 4.157 9 C 0.090 3.910 10 H 0.115 0.885 11 N -0.877 5.877 12 S 2.687 3.313 13 O -0.954 6.954 14 O -0.955 6.955 15 C -0.725 4.725 16 C -0.010 4.010 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.175 4.175 26 C -0.158 4.158 27 C -0.114 4.114 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.248 0.752 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.865 15.693 -6.159 24.563 hybrid contribution -1.329 -0.777 0.979 1.825 sum -19.194 14.916 -5.180 24.854 Atomic orbital electron populations 1.23042 0.78522 1.04001 1.01107 1.86121 1.21231 1.26779 1.88685 1.18908 0.92300 0.84225 0.96855 1.21173 0.99901 0.92406 1.08665 1.20898 0.93759 0.97030 0.98609 1.19530 0.93037 0.94689 1.03024 1.19504 0.94741 0.91764 0.98837 1.20477 0.91430 0.98635 1.05169 1.19503 0.89458 0.88722 0.93322 0.88450 1.56004 1.49305 1.51351 1.30991 1.05685 0.73455 0.74632 0.77551 1.93543 1.57338 1.58174 1.86376 1.93560 1.84623 1.66128 1.51194 1.30481 1.11544 1.12762 1.17702 1.18959 0.90048 0.93188 0.98834 1.21043 1.03077 1.22310 1.09365 0.91971 1.25063 0.94920 0.96856 0.97629 1.69968 1.08070 1.34790 1.40040 0.86428 0.78562 0.79680 0.82715 1.19640 1.20802 1.20810 1.22103 1.01795 0.92993 1.00647 1.21562 0.94549 0.99272 1.00425 1.20446 0.95934 0.93030 1.01947 0.92798 0.88207 0.92741 0.85572 0.85864 0.84735 0.75213 0.86020 0.86319 0.94947 0.94668 0.92613 0.89328 0.90908 0.91155 0.90900 0.90887 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.82 101.05 0.99 1.20 16 2 O -0.31 -3.75 10.50 -19.43 -0.20 -3.95 16 3 C 0.12 1.45 6.68 -39.32 -0.26 1.19 16 4 C -0.20 -1.96 9.04 -39.54 -0.36 -2.32 16 5 C -0.08 -0.77 9.60 -39.46 -0.38 -1.15 16 6 C -0.10 -1.01 5.74 -104.57 -0.60 -1.61 16 7 C -0.05 -0.54 5.48 -104.62 -0.57 -1.11 16 8 C -0.14 -1.73 9.08 -39.30 -0.36 -2.09 16 9 C 0.20 2.38 2.57 -69.24 -0.18 2.20 16 10 H 0.10 1.15 7.10 -51.93 -0.37 0.79 16 11 N -1.12 -14.93 4.48 -6.02 -0.03 -14.96 16 12 S 2.59 46.31 5.38 -107.50 -0.58 45.73 16 13 O -0.96 -19.44 17.42 -57.54 -1.00 -20.45 16 14 O -0.96 -20.32 18.08 -57.54 -1.04 -21.36 16 15 C -0.59 -11.37 5.80 37.16 0.22 -11.15 16 16 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 17 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 21 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.14 -1.48 5.57 -26.70 -0.15 -1.63 16 26 C -0.12 -1.03 5.98 -26.70 -0.16 -1.19 16 27 C -0.08 -0.60 5.67 -28.05 -0.16 -0.76 16 28 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.13 0.92 6.33 -52.49 -0.33 0.59 16 32 H 0.12 0.81 8.05 -52.49 -0.42 0.39 16 33 H 0.13 1.73 7.61 -52.48 -0.40 1.34 16 34 H 0.41 4.87 8.71 -34.47 -0.30 4.57 16 35 H 0.12 2.13 8.14 -51.93 -0.42 1.70 16 36 H 0.12 2.04 7.50 -51.92 -0.39 1.65 16 37 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.09 7.70 -51.93 -0.40 0.69 16 41 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -35.67 378.12 -10.70 -46.37 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.75 Total: 3.45 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: -2.52 Total: -31.01 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.71 Total: -40.83 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -2.25 Total: -45.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 46.31 SS G_CDS: -0.58 Total: 45.73 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.67 -10.70 -46.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654680298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.864 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds