Wall clock time and date at job start Tue Mar 31 2020 23:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00137 * 2 1 4 4 C 1.38762 * 120.17171 * 359.97019 * 3 2 1 5 5 C 1.37835 * 119.71620 * 180.14578 * 4 3 2 6 6 C 1.38963 * 120.62610 * 359.97438 * 5 4 3 7 7 C 1.37714 * 119.76221 * 359.81394 * 6 5 4 8 8 C 1.38417 * 120.18025 * 180.02562 * 3 2 1 9 9 C 1.50648 * 122.56593 * 180.33301 * 7 6 5 10 10 H 1.08999 * 109.22367 * 102.67149 * 9 7 6 11 11 N 1.46500 * 109.25140 * 222.11931 * 9 7 6 12 12 S 1.65598 * 120.00071 * 216.79234 * 11 9 7 13 13 O 1.42100 * 104.27977 * 307.02101 * 12 11 9 14 14 O 1.42101 * 104.27988 * 179.16037 * 12 11 9 15 15 C 1.81405 * 104.44824 * 63.08893 * 12 11 9 16 16 C 1.53004 * 109.47114 * 175.04826 * 15 12 11 17 17 C 1.50696 * 109.46695 * 180.02562 * 16 15 12 18 18 H 1.07993 * 120.00723 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99760 * 179.72494 * 17 16 15 20 20 N 1.31515 * 119.99618 * 0.27187 * 19 17 16 21 21 Si 1.86800 * 120.00099 * 180.27516 * 19 17 16 22 22 H 1.48498 * 109.47251 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46975 * 119.99741 * 21 19 17 24 24 H 1.48502 * 109.46815 * 239.99782 * 21 19 17 25 25 C 1.52733 * 110.58292 * 342.40477 * 9 7 6 26 26 C 1.53330 * 108.36189 * 51.11053 * 25 9 7 27 27 C 1.50651 * 117.69233 * 179.75114 * 6 5 4 28 28 H 1.08995 * 109.46910 * 60.00437 * 1 2 3 29 29 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47404 * 300.00368 * 1 2 3 31 31 H 1.07997 * 120.14718 * 0.17414 * 4 3 2 32 32 H 1.07994 * 119.69042 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.74695 * 359.97265 * 8 3 2 34 34 H 0.97001 * 119.99950 * 36.79506 * 11 9 7 35 35 H 1.08998 * 109.46782 * 55.04584 * 15 12 11 36 36 H 1.08999 * 109.46901 * 295.04703 * 15 12 11 37 37 H 1.08991 * 109.46968 * 59.99796 * 16 15 12 38 38 H 1.09003 * 109.46416 * 299.99772 * 16 15 12 39 39 H 0.97004 * 119.99631 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.68067 * 170.82483 * 25 9 7 41 41 H 1.08994 * 109.68675 * 291.34941 * 25 9 7 42 42 H 1.08992 * 109.68271 * 49.78149 * 26 25 9 43 43 H 1.09004 * 109.67824 * 170.33657 * 26 25 9 44 44 H 1.09001 * 109.24900 * 42.24030 * 27 6 5 45 45 H 1.08996 * 109.25082 * 282.81712 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2937 2.3769 -0.0006 5 6 1.9293 3.6000 -0.0037 6 6 3.3168 3.6768 -0.0056 7 6 4.0654 2.5210 -0.0005 8 6 3.4280 1.2876 -0.0005 9 6 5.5719 2.5306 0.0051 10 1 5.9284 2.3090 1.0111 11 7 6.0649 1.5060 -0.9187 12 16 7.4263 0.6404 -0.5451 13 8 8.4046 1.6311 -0.2609 14 8 7.5847 -0.2530 -1.6387 15 6 6.9853 -0.2691 0.9613 16 6 8.1301 -1.2097 1.3427 17 6 7.7633 -1.9657 2.5937 18 1 6.8094 -1.7923 3.0694 19 6 8.6436 -2.8825 3.1282 20 7 9.8055 -3.0933 2.5492 21 14 8.1858 -3.8252 4.6745 22 1 6.8346 -3.4075 5.1272 23 1 8.1828 -5.2815 4.3838 24 1 9.1765 -3.5356 5.7422 25 6 6.1017 3.8961 -0.4277 26 6 5.4062 4.9729 0.4135 27 6 3.9420 5.0474 -0.0147 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2149 2.3264 0.0017 32 1 1.3434 4.5072 -0.0037 33 1 4.0151 0.3811 -0.0005 34 1 5.5940 1.3347 -1.7492 35 1 6.0810 -0.8509 0.7826 36 1 6.8089 0.4365 1.7731 37 1 9.0342 -0.6278 1.5213 38 1 8.3064 -1.9152 0.5308 39 1 10.4246 -3.7386 2.9250 40 1 7.1784 3.9408 -0.2639 41 1 5.8840 4.0566 -1.4835 42 1 5.4670 4.7099 1.4695 43 1 5.8870 5.9368 0.2464 44 1 3.3988 5.6948 0.6737 45 1 3.8825 5.4629 -1.0206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654680298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:27 Heat of formation + Delta-G solvation = -129.087851 kcal Electronic energy + Delta-G solvation = -27777.509084 eV Core-core repulsion = 23885.461749 eV Total energy + Delta-G solvation = -3892.047335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48844 -39.71806 -38.17494 -37.06947 -36.79318 -35.91403 -35.24698 -33.15009 -31.96126 -30.66823 -29.36302 -27.64303 -27.58960 -24.51097 -23.65713 -23.32110 -23.02689 -20.61067 -20.25920 -19.27195 -18.91199 -18.18612 -17.52004 -17.20974 -17.00831 -16.62782 -16.54521 -16.51126 -16.07741 -15.60930 -15.22628 -15.00398 -14.57568 -14.49355 -14.41227 -14.11741 -13.79860 -13.72148 -13.52078 -13.23420 -13.13826 -13.07900 -12.97227 -12.93452 -12.80417 -12.74655 -12.27965 -12.14761 -12.06683 -11.96554 -11.87452 -11.71873 -11.51449 -11.29049 -11.14106 -10.66066 -10.48845 -9.77472 -8.96593 -8.26882 -6.40600 -0.72689 0.30672 0.47008 1.39781 1.40438 1.53862 1.80160 2.37187 2.39754 2.74082 2.75704 3.06582 3.24899 3.53046 3.78634 3.91119 3.95057 3.97073 4.04319 4.13767 4.16764 4.23047 4.28882 4.37524 4.40385 4.59885 4.63536 4.71857 4.72625 4.75001 4.78646 4.99653 5.07100 5.09765 5.19627 5.25699 5.26215 5.31057 5.40007 5.48155 5.49574 5.66156 5.67718 5.86242 6.04852 6.07260 6.49832 6.72718 7.29442 8.85690 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.003714 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.868016 B = 7537.704848 C = 9084.207213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.104 3.896 4 C -0.199 4.199 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.055 4.055 8 C -0.164 4.164 9 C 0.189 3.811 10 H 0.095 0.905 11 N -1.102 6.102 12 S 2.619 3.381 13 O -0.986 6.986 14 O -0.998 6.998 15 C -0.591 4.591 16 C 0.022 3.978 17 C -0.538 4.538 18 H 0.073 0.927 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.137 4.137 26 C -0.118 4.118 27 C -0.073 4.073 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.424 0.576 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.009 0.991 38 H 0.007 0.993 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.038 17.931 -5.007 28.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.059 3.941 4 C -0.218 4.218 5 C -0.098 4.098 6 C -0.105 4.105 7 C -0.057 4.057 8 C -0.184 4.184 9 C 0.083 3.917 10 H 0.113 0.887 11 N -0.862 5.862 12 S 2.716 3.284 13 O -0.976 6.976 14 O -0.988 6.988 15 C -0.723 4.723 16 C -0.017 4.017 17 C -0.577 4.577 18 H 0.091 0.909 19 C -0.201 4.201 20 N -0.573 5.573 21 Si 0.796 3.204 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.201 1.201 25 C -0.177 4.177 26 C -0.156 4.156 27 C -0.110 4.110 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.137 0.863 34 H 0.260 0.740 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.889 17.695 -5.361 27.896 hybrid contribution -0.477 -1.341 0.680 1.578 sum -21.366 16.354 -4.681 27.310 Atomic orbital electron populations 1.23313 0.76468 1.05304 1.02366 1.86076 1.23532 1.27339 1.88879 1.19099 0.92308 0.85078 0.97565 1.21483 1.01123 0.91804 1.07388 1.21279 0.93551 0.98000 0.97018 1.19841 0.93649 0.95032 1.01996 1.19411 0.93953 0.92227 1.00141 1.20519 0.92211 0.98570 1.07057 1.19747 0.90456 0.88718 0.92802 0.88680 1.55527 1.48193 1.50861 1.31609 1.04530 0.73778 0.73912 0.76220 1.93512 1.59009 1.58597 1.86472 1.93506 1.85630 1.67469 1.52239 1.30380 1.09687 1.12526 1.19731 1.18807 0.91580 0.93578 0.97688 1.21517 1.03538 1.22580 1.10079 0.90896 1.26092 0.94726 0.97962 1.01289 1.70107 1.09385 1.35752 1.42019 0.85280 0.78867 0.78008 0.78199 1.18170 1.20291 1.20132 1.22104 1.00900 0.93042 1.01616 1.21579 0.95214 0.99046 0.99742 1.20502 0.95126 0.92069 1.03307 0.91352 0.87080 0.91528 0.83136 0.82653 0.86340 0.74009 0.84384 0.84214 0.97291 0.97436 0.92352 0.91156 0.90265 0.91406 0.89172 0.88662 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 113.37 1.11 1.37 16 2 O -0.34 -8.00 10.50 -92.43 -0.97 -8.97 16 3 C 0.10 2.38 6.68 22.44 0.15 2.53 16 4 C -0.20 -3.31 9.04 22.30 0.20 -3.10 16 5 C -0.08 -1.17 9.60 22.35 0.21 -0.95 16 6 C -0.10 -1.79 5.74 -19.83 -0.11 -1.90 16 7 C -0.06 -1.22 5.48 -19.86 -0.11 -1.32 16 8 C -0.16 -4.09 9.08 22.45 0.20 -3.89 16 9 C 0.19 4.47 2.57 44.14 0.11 4.59 16 10 H 0.10 2.25 7.10 -2.39 -0.02 2.23 16 11 N -1.10 -29.61 4.48 -172.97 -0.77 -30.38 16 12 S 2.62 96.68 5.38 -56.49 -0.30 96.38 16 13 O -0.99 -40.86 17.42 -127.65 -2.22 -43.08 16 14 O -1.00 -43.61 18.08 -127.65 -2.31 -45.91 16 15 C -0.59 -23.37 5.80 71.98 0.42 -22.95 16 16 C 0.02 1.20 4.98 29.85 0.15 1.34 16 17 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 18 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 19 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 20 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 21 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 C -0.14 -2.84 5.57 30.62 0.17 -2.67 16 26 C -0.12 -1.74 5.98 30.61 0.18 -1.56 16 27 C -0.07 -0.89 5.67 29.74 0.17 -0.72 16 28 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 31 H 0.15 1.66 6.33 -2.91 -0.02 1.64 16 32 H 0.16 1.24 8.05 -2.91 -0.02 1.22 16 33 H 0.12 3.18 7.61 -2.91 -0.02 3.16 16 34 H 0.42 10.02 8.71 -96.75 -0.84 9.18 16 35 H 0.14 4.94 8.14 -2.39 -0.02 4.92 16 36 H 0.14 4.85 7.50 -2.39 -0.02 4.83 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.07 1.71 7.70 -2.39 -0.02 1.69 16 41 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 42 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 0.79 8.12 -2.39 -0.02 0.77 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -79.13 378.12 -0.56 -79.68 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.16 Total: 22.49 kcal Atomic # 6 Polarization: -62.71 SS G_CDS: 3.56 Total: -59.16 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -0.49 Total: -87.50 kcal Atomic # 8 Polarization: -92.47 SS G_CDS: -5.50 Total: -97.97 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 96.68 SS G_CDS: -0.30 Total: 96.38 kcal Total: -79.13 -0.56 -79.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654680298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.404 kcal (2) G-P(sol) polarization free energy of solvation -79.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds