Wall clock time and date at job start Tue Mar 31 2020 22:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00301 * 2 1 4 4 N 1.46500 * 109.46940 * 125.00149 * 3 2 1 5 5 C 1.46502 * 119.99810 * 275.00265 * 4 3 2 6 6 C 1.50696 * 109.47065 * 274.99814 * 5 4 3 7 7 H 1.08007 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00469 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00592 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99548 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46894 * 89.99990 * 10 8 6 12 12 H 1.48500 * 109.47339 * 209.99837 * 10 8 6 13 13 H 1.48496 * 109.47322 * 330.00442 * 10 8 6 14 14 S 1.65600 * 120.00110 * 95.00116 * 4 3 2 15 15 O 1.42098 * 106.39962 * 336.45922 * 14 4 3 16 16 O 1.42100 * 106.40111 * 203.54195 * 14 4 3 17 17 C 1.76199 * 107.21677 * 89.99957 * 14 4 3 18 18 C 1.38254 * 120.00075 * 269.90828 * 17 14 4 19 19 C 1.38204 * 119.99816 * 179.97438 * 18 17 14 20 20 C 1.38262 * 120.00535 * 0.13864 * 19 18 17 21 21 C 1.38207 * 119.99549 * 359.95204 * 20 19 18 22 22 C 1.50701 * 119.99822 * 180.02562 * 21 20 19 23 23 O 1.42899 * 109.47103 * 269.97599 * 22 21 20 24 24 C 1.42903 * 114.00342 * 180.02562 * 23 22 21 25 25 C 1.52991 * 109.47131 * 180.02562 * 24 23 22 26 26 C 1.38220 * 119.99875 * 90.00339 * 17 14 4 27 27 H 1.07995 * 120.00700 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99516 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99516 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47103 * 5.00406 * 3 2 1 31 31 H 1.08997 * 109.47296 * 245.00406 * 3 2 1 32 32 H 1.09003 * 109.47364 * 34.99718 * 5 4 3 33 33 H 1.09002 * 109.46916 * 155.00173 * 5 4 3 34 34 H 0.96999 * 120.00419 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.99692 * 0.06811 * 18 17 14 36 36 H 1.08013 * 119.99933 * 180.11390 * 19 18 17 37 37 H 1.07991 * 120.00050 * 179.97438 * 20 19 18 38 38 H 1.08993 * 109.47341 * 29.98219 * 22 21 20 39 39 H 1.09001 * 109.46864 * 149.98303 * 22 21 20 40 40 H 1.08999 * 109.46858 * 300.00220 * 24 23 22 41 41 H 1.08994 * 109.46670 * 60.00004 * 24 23 22 42 42 H 1.09003 * 109.47204 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47303 * 299.99793 * 25 24 23 44 44 H 1.09001 * 109.47202 * 60.00080 * 25 24 23 45 45 H 1.08000 * 119.99660 * 0.26988 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.5286 1.7619 2.4523 6 6 2.5993 3.2643 2.5451 7 1 2.9549 3.8412 1.7041 8 6 2.2101 3.9027 3.7036 9 7 2.2723 5.2138 3.7847 10 14 1.5944 2.9051 5.1579 11 1 2.7394 2.5483 6.0337 12 1 0.6127 3.7089 5.9296 13 1 0.9418 1.6649 4.6668 14 16 4.5714 0.8757 0.9173 15 8 4.5923 0.0260 -0.2215 16 8 5.0503 0.4760 2.1941 17 6 5.4770 2.3213 0.4762 18 6 5.6145 2.6719 -0.8540 19 6 6.3243 3.8062 -1.1999 20 6 6.8994 4.5888 -0.2158 21 6 6.7636 4.2373 1.1139 22 6 7.3899 5.0905 2.1866 23 8 8.7167 4.6290 2.4482 24 6 9.4032 5.3739 3.4562 25 6 10.8060 4.7953 3.6514 26 6 6.0515 3.1039 1.4601 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4984 1.4370 2.5982 33 1 3.1614 1.3201 3.2220 34 1 1.9981 5.6629 4.5996 35 1 5.1659 2.0602 -1.6227 36 1 6.4302 4.0811 -2.2390 37 1 7.4545 5.4748 -0.4861 38 1 7.4252 6.1272 1.8519 39 1 6.7955 5.0230 3.0978 40 1 9.4803 6.4166 3.1481 41 1 8.8504 5.3119 4.3935 42 1 11.3294 5.3633 4.4206 43 1 10.7293 3.7525 3.9593 44 1 11.3585 4.8577 2.7139 45 1 5.9491 2.8267 2.4989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662157842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:40 Heat of formation + Delta-G solvation = -70.653091 kcal Electronic energy + Delta-G solvation = -28053.439584 eV Core-core repulsion = 24163.926170 eV Total energy + Delta-G solvation = -3889.513414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.25533 -37.60861 -36.81234 -36.48165 -35.32999 -33.22632 -32.50197 -32.01920 -30.96770 -30.56754 -28.12503 -25.86251 -25.02455 -23.03560 -22.78924 -21.90972 -21.49985 -19.78526 -18.35312 -17.36760 -16.93435 -16.80635 -16.52719 -16.23026 -15.82902 -15.71514 -15.04768 -14.72545 -14.41391 -14.23374 -13.82074 -13.66741 -13.15027 -13.07754 -12.96103 -12.65833 -12.44187 -12.35970 -12.19931 -12.00191 -11.91808 -11.61188 -11.51155 -11.40661 -11.36724 -11.27601 -11.02044 -10.86331 -10.75700 -10.51420 -10.25390 -10.22781 -9.65278 -9.55565 -9.15548 -9.08306 -8.68641 -8.66643 -8.17606 -6.19084 -4.19689 0.87773 1.19221 1.52468 2.54583 3.24044 3.30725 3.34856 3.40599 3.69331 4.06208 4.30116 4.32726 4.72076 4.92035 4.99815 5.04850 5.14326 5.17307 5.20581 5.23208 5.31964 5.35075 5.39211 5.46410 5.56594 5.58528 5.66077 5.72757 5.84233 6.02783 6.03298 6.05988 6.14658 6.19247 6.32849 6.39623 6.43866 6.64306 6.81872 6.88829 6.94510 7.07083 7.10085 7.23331 7.33728 7.50409 8.37261 8.85009 9.41577 10.93054 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004852 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.625945 B = 5769.499566 C = 7466.490113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C 0.155 3.845 4 N -0.972 5.972 5 C 0.212 3.788 6 C -0.542 4.542 7 H 0.081 0.919 8 C 0.078 3.922 9 N -0.893 5.893 10 Si 0.865 3.135 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.262 1.262 14 S 2.690 3.310 15 O -0.973 6.973 16 O -0.959 6.959 17 C -0.667 4.667 18 C -0.019 4.019 19 C -0.151 4.151 20 C -0.049 4.049 21 C -0.110 4.110 22 C 0.104 3.896 23 O -0.386 6.386 24 C 0.055 3.945 25 C -0.150 4.150 26 C 0.029 3.971 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.787 -0.959 -6.454 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.183 4.183 3 C 0.030 3.970 4 N -0.810 5.810 5 C 0.089 3.911 6 C -0.581 4.581 7 H 0.099 0.901 8 C -0.125 4.125 9 N -0.531 5.531 10 Si 0.691 3.309 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.781 3.219 15 O -0.964 6.964 16 O -0.950 6.950 17 C -0.753 4.753 18 C -0.039 4.039 19 C -0.169 4.169 20 C -0.067 4.067 21 C -0.111 4.111 22 C 0.028 3.972 23 O -0.306 6.306 24 C -0.022 4.022 25 C -0.208 4.208 26 C 0.010 3.990 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.177 -1.766 -6.309 10.478 hybrid contribution -0.473 0.815 0.858 1.275 sum 7.704 -0.951 -5.451 9.485 Atomic orbital electron populations 1.23810 0.95794 1.01686 1.01208 1.23466 0.96354 0.99315 0.99121 1.20250 0.93180 0.95667 0.87941 1.57166 1.24073 1.82649 1.17073 1.19661 0.96692 0.96327 0.78406 1.21451 1.45203 0.89782 1.01633 0.90082 1.24816 0.94780 0.94714 0.98182 1.69888 1.47554 1.07696 1.27920 0.87012 0.79595 0.80868 0.83405 1.19672 1.21030 1.18625 1.01898 0.72838 0.74019 0.73186 1.93519 1.86860 1.63503 1.52487 1.93540 1.79897 1.80755 1.40784 1.31063 1.18612 1.24746 1.00890 1.20864 0.93872 0.95043 0.94096 1.21131 1.00376 0.96028 0.99398 1.21236 0.95156 0.98059 0.92277 1.19592 1.00377 0.97079 0.94014 1.21311 0.83155 0.95776 0.96952 1.87944 1.26953 1.57506 1.58182 1.22458 0.93579 0.94860 0.91267 1.21736 0.94882 1.02080 1.02063 1.20807 0.88750 0.90229 0.99225 0.88810 0.88284 0.87369 0.89093 0.90390 0.94059 0.93711 0.92531 0.84714 0.85371 0.85700 0.92329 0.91283 0.93529 0.93106 0.91259 0.91756 0.92039 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 14.32 29.01 0.42 -2.12 16 2 C -0.16 -2.51 9.84 -36.03 -0.35 -2.86 16 3 C 0.16 2.61 5.78 -5.19 -0.03 2.58 16 4 N -0.97 -19.28 2.75 -116.95 -0.32 -19.60 16 5 C 0.21 4.84 4.50 -5.19 -0.02 4.81 16 6 C -0.54 -13.99 9.94 -34.44 -0.34 -14.33 16 7 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 8 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 10 Si 0.86 20.36 27.47 -169.99 -4.67 15.69 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 14 S 2.69 53.06 5.65 -107.50 -0.61 52.45 16 15 O -0.97 -19.00 16.25 -57.17 -0.93 -19.93 16 16 O -0.96 -21.39 15.83 -57.17 -0.91 -22.29 16 17 C -0.67 -12.42 5.97 -39.58 -0.24 -12.66 16 18 C -0.02 -0.31 9.52 -39.59 -0.38 -0.69 16 19 C -0.15 -2.13 10.05 -39.59 -0.40 -2.52 16 20 C -0.05 -0.72 9.70 -39.58 -0.38 -1.10 16 21 C -0.11 -1.87 5.51 -104.63 -0.58 -2.45 16 22 C 0.10 1.60 6.06 36.01 0.22 1.82 16 23 O -0.39 -5.87 10.33 -35.23 -0.36 -6.23 16 24 C 0.05 0.65 6.66 37.15 0.25 0.89 16 25 C -0.15 -1.48 10.28 37.15 0.38 -1.10 16 26 C 0.03 0.56 9.18 -39.58 -0.36 0.20 16 27 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.10 1.29 7.84 -52.48 -0.41 0.88 16 29 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.09 1.53 7.76 -51.93 -0.40 1.13 16 31 H 0.08 1.15 7.61 -51.93 -0.40 0.76 16 32 H 0.04 0.93 7.17 -51.93 -0.37 0.55 16 33 H 0.05 1.06 6.34 -51.93 -0.33 0.73 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.14 1.86 7.62 -52.49 -0.40 1.46 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.14 2.85 7.61 -52.49 -0.40 2.45 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -31.69 393.21 -9.96 -41.66 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.95 Total: 4.49 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -1.92 Total: -27.51 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.45 Total: -44.24 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -2.20 Total: -48.46 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: 53.06 SS G_CDS: -0.61 Total: 52.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.69 -9.96 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662157842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.997 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds