Wall clock time and date at job start Tue Mar 31 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00301 * 2 1 4 4 N 1.46500 * 109.46940 * 125.00149 * 3 2 1 5 5 C 1.46502 * 119.99810 * 275.00265 * 4 3 2 6 6 C 1.50696 * 109.47065 * 274.99814 * 5 4 3 7 7 H 1.08007 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00469 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00592 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99548 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46894 * 89.99990 * 10 8 6 12 12 H 1.48500 * 109.47339 * 209.99837 * 10 8 6 13 13 H 1.48496 * 109.47322 * 330.00442 * 10 8 6 14 14 S 1.65600 * 120.00110 * 95.00116 * 4 3 2 15 15 O 1.42098 * 106.39962 * 336.45922 * 14 4 3 16 16 O 1.42100 * 106.40111 * 203.54195 * 14 4 3 17 17 C 1.76199 * 107.21677 * 89.99957 * 14 4 3 18 18 C 1.38254 * 120.00075 * 269.90828 * 17 14 4 19 19 C 1.38204 * 119.99816 * 179.97438 * 18 17 14 20 20 C 1.38262 * 120.00535 * 0.13864 * 19 18 17 21 21 C 1.38207 * 119.99549 * 359.95204 * 20 19 18 22 22 C 1.50701 * 119.99822 * 180.02562 * 21 20 19 23 23 O 1.42899 * 109.47103 * 269.97599 * 22 21 20 24 24 C 1.42903 * 114.00342 * 180.02562 * 23 22 21 25 25 C 1.52991 * 109.47131 * 180.02562 * 24 23 22 26 26 C 1.38220 * 119.99875 * 90.00339 * 17 14 4 27 27 H 1.07995 * 120.00700 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99516 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99516 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47103 * 5.00406 * 3 2 1 31 31 H 1.08997 * 109.47296 * 245.00406 * 3 2 1 32 32 H 1.09003 * 109.47364 * 34.99718 * 5 4 3 33 33 H 1.09002 * 109.46916 * 155.00173 * 5 4 3 34 34 H 0.96999 * 120.00419 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.99692 * 0.06811 * 18 17 14 36 36 H 1.08013 * 119.99933 * 180.11390 * 19 18 17 37 37 H 1.07991 * 120.00050 * 179.97438 * 20 19 18 38 38 H 1.08993 * 109.47341 * 29.98219 * 22 21 20 39 39 H 1.09001 * 109.46864 * 149.98303 * 22 21 20 40 40 H 1.08999 * 109.46858 * 300.00220 * 24 23 22 41 41 H 1.08994 * 109.46670 * 60.00004 * 24 23 22 42 42 H 1.09003 * 109.47204 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47303 * 299.99793 * 25 24 23 44 44 H 1.09001 * 109.47202 * 60.00080 * 25 24 23 45 45 H 1.08000 * 119.99660 * 0.26988 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.5286 1.7619 2.4523 6 6 2.5993 3.2643 2.5451 7 1 2.9549 3.8412 1.7041 8 6 2.2101 3.9027 3.7036 9 7 2.2723 5.2138 3.7847 10 14 1.5944 2.9051 5.1579 11 1 2.7394 2.5483 6.0337 12 1 0.6127 3.7089 5.9296 13 1 0.9418 1.6649 4.6668 14 16 4.5714 0.8757 0.9173 15 8 4.5923 0.0260 -0.2215 16 8 5.0503 0.4760 2.1941 17 6 5.4770 2.3213 0.4762 18 6 5.6145 2.6719 -0.8540 19 6 6.3243 3.8062 -1.1999 20 6 6.8994 4.5888 -0.2158 21 6 6.7636 4.2373 1.1139 22 6 7.3899 5.0905 2.1866 23 8 8.7167 4.6290 2.4482 24 6 9.4032 5.3739 3.4562 25 6 10.8060 4.7953 3.6514 26 6 6.0515 3.1039 1.4601 27 1 -0.5401 -0.9352 -0.0004 28 1 -0.5399 0.9354 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4026 -0.9314 32 1 1.4984 1.4370 2.5982 33 1 3.1614 1.3201 3.2220 34 1 1.9981 5.6629 4.5996 35 1 5.1659 2.0602 -1.6227 36 1 6.4302 4.0811 -2.2390 37 1 7.4545 5.4748 -0.4861 38 1 7.4252 6.1272 1.8519 39 1 6.7955 5.0230 3.0978 40 1 9.4803 6.4166 3.1481 41 1 8.8504 5.3119 4.3935 42 1 11.3294 5.3633 4.4206 43 1 10.7293 3.7525 3.9593 44 1 11.3585 4.8577 2.7139 45 1 5.9491 2.8267 2.4989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662157842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:39 Heat of formation + Delta-G solvation = -90.767503 kcal Electronic energy + Delta-G solvation = -28054.311810 eV Core-core repulsion = 24163.926170 eV Total energy + Delta-G solvation = -3890.385640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.49225 -38.73680 -38.39948 -38.00987 -36.95554 -34.95361 -33.67811 -33.61717 -32.23374 -31.58863 -29.91139 -27.07213 -26.52468 -24.39625 -23.70289 -23.69740 -22.76786 -21.01444 -19.84957 -19.03637 -18.63174 -18.40011 -17.64329 -17.56500 -17.17332 -17.00871 -16.39593 -16.03784 -15.90508 -15.71522 -15.33124 -14.83819 -14.61299 -14.51158 -14.12757 -14.07684 -13.85787 -13.66946 -13.52393 -13.30290 -13.29893 -13.25893 -13.15224 -13.06425 -12.51121 -12.42790 -12.39107 -12.28445 -12.08519 -12.02024 -11.91660 -11.69703 -11.63853 -10.76670 -10.65263 -10.37465 -10.31686 -9.95093 -9.79886 -8.27713 -6.31096 -0.61049 -0.14980 0.23867 1.34562 1.38397 1.39761 1.46650 2.02938 2.34582 2.37553 2.71614 2.96087 3.07339 3.28795 3.73904 3.81049 3.88174 3.98715 4.10589 4.14798 4.17923 4.23427 4.28929 4.40174 4.40332 4.47024 4.47851 4.69874 4.78346 4.83283 4.87245 4.90387 4.95688 5.00241 5.06433 5.11423 5.22035 5.23937 5.29235 5.38545 5.46861 5.64012 5.76822 5.85179 5.95769 6.16108 6.31483 6.73303 7.32510 8.87182 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004852 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.625945 B = 5769.499566 C = 7466.490113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.188 4.188 3 C 0.148 3.852 4 N -0.976 5.976 5 C 0.221 3.779 6 C -0.532 4.532 7 H 0.053 0.947 8 C 0.028 3.972 9 N -0.933 5.933 10 Si 0.915 3.085 11 H -0.274 1.274 12 H -0.279 1.279 13 H -0.242 1.242 14 S 2.697 3.303 15 O -0.973 6.973 16 O -0.994 6.994 17 C -0.682 4.682 18 C -0.029 4.029 19 C -0.139 4.139 20 C -0.045 4.045 21 C -0.126 4.126 22 C 0.107 3.893 23 O -0.404 6.404 24 C 0.044 3.956 25 C -0.147 4.147 26 C -0.005 4.005 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.163 0.837 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 -0.813 -8.121 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.208 4.208 3 C 0.023 3.977 4 N -0.813 5.813 5 C 0.096 3.904 6 C -0.571 4.571 7 H 0.071 0.929 8 C -0.172 4.172 9 N -0.573 5.573 10 Si 0.739 3.261 11 H -0.199 1.199 12 H -0.204 1.204 13 H -0.166 1.166 14 S 2.790 3.210 15 O -0.963 6.963 16 O -0.985 6.985 17 C -0.770 4.770 18 C -0.048 4.048 19 C -0.157 4.157 20 C -0.063 4.063 21 C -0.127 4.127 22 C 0.031 3.969 23 O -0.324 6.324 24 C -0.032 4.032 25 C -0.204 4.204 26 C -0.025 4.025 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.192 0.808 37 H 0.180 0.820 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.198 -1.664 -7.988 11.567 hybrid contribution -0.428 0.840 1.268 1.580 sum 7.770 -0.825 -6.720 10.306 Atomic orbital electron populations 1.24061 0.95160 1.03062 0.98059 1.23377 0.97043 0.98418 1.01997 1.20487 0.93068 0.96592 0.87527 1.57103 1.24745 1.82566 1.16869 1.19391 0.96970 0.94113 0.79920 1.21575 1.43757 0.91239 1.00552 0.92909 1.25528 0.95315 0.95531 1.00778 1.70001 1.49294 1.09257 1.28784 0.86189 0.79187 0.80336 0.80369 1.19923 1.20444 1.16553 1.01464 0.72686 0.74331 0.72515 1.93503 1.86900 1.63972 1.51945 1.93487 1.80498 1.81863 1.42632 1.30813 1.19527 1.24435 1.02259 1.21269 0.94166 0.96180 0.93203 1.21676 0.98093 0.94421 1.01542 1.21713 0.94497 0.99055 0.91060 1.19898 1.00296 0.96554 0.95934 1.21261 0.83136 0.96749 0.95786 1.87918 1.26651 1.58689 1.59173 1.22742 0.94140 0.95854 0.90432 1.21757 0.93886 1.01687 1.03060 1.20744 0.91285 0.92249 0.98234 0.86488 0.87775 0.87476 0.89456 0.88622 0.93096 0.94719 0.92476 0.82534 0.80811 0.81979 0.89829 0.93578 0.91553 0.93530 0.88734 0.92920 0.91681 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 14.32 67.78 0.97 -3.12 16 2 C -0.19 -5.55 9.84 25.64 0.25 -5.30 16 3 C 0.15 4.88 5.78 85.63 0.50 5.37 16 4 N -0.98 -39.12 2.75 -523.91 -1.44 -40.56 16 5 C 0.22 10.19 4.50 85.63 0.39 10.57 16 6 C -0.53 -28.26 9.94 25.60 0.25 -28.00 16 7 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 8 C 0.03 1.53 5.47 84.66 0.46 2.00 16 9 N -0.93 -54.59 13.96 21.45 0.30 -54.29 16 10 Si 0.92 42.11 27.47 68.60 1.88 43.99 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 14 S 2.70 108.85 5.65 -56.49 -0.32 108.53 16 15 O -0.97 -37.78 16.25 -128.00 -2.08 -39.86 16 16 O -0.99 -46.46 15.83 -128.00 -2.03 -48.49 16 17 C -0.68 -25.90 5.97 22.27 0.13 -25.76 16 18 C -0.03 -0.88 9.52 22.27 0.21 -0.67 16 19 C -0.14 -3.49 10.05 22.27 0.22 -3.27 16 20 C -0.05 -1.23 9.70 22.27 0.22 -1.01 16 21 C -0.13 -4.34 5.51 -19.87 -0.11 -4.45 16 22 C 0.11 3.35 6.06 71.24 0.43 3.78 16 23 O -0.40 -12.36 10.33 -148.98 -1.54 -13.90 16 24 C 0.04 1.02 6.66 71.98 0.48 1.50 16 25 C -0.15 -2.75 10.28 71.98 0.74 -2.01 16 26 C -0.01 -0.22 9.18 22.27 0.20 -0.02 16 27 H 0.12 2.35 8.06 -2.91 -0.02 2.32 16 28 H 0.10 2.47 7.84 -2.91 -0.02 2.44 16 29 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 30 H 0.09 2.90 7.76 -2.39 -0.02 2.88 16 31 H 0.10 2.74 7.61 -2.39 -0.02 2.72 16 32 H 0.05 2.25 7.17 -2.39 -0.02 2.23 16 33 H 0.03 1.68 6.34 -2.39 -0.02 1.67 16 34 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.16 3.97 7.62 -2.91 -0.02 3.95 16 36 H 0.17 2.78 8.06 -2.90 -0.02 2.75 16 37 H 0.16 3.13 8.06 -2.92 -0.02 3.11 16 38 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 39 H 0.05 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.11 5.06 7.61 -2.91 -0.02 5.03 16 Total: -1.00 -70.67 393.21 1.03 -69.64 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.91 Total: 25.31 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 5.35 Total: -50.39 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -1.14 Total: -94.85 kcal Atomic # 8 Polarization: -96.60 SS G_CDS: -5.65 Total: -102.25 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 43.99 kcal Atomic # 16 Polarization: 108.85 SS G_CDS: -0.32 Total: 108.53 kcal Total: -70.67 1.03 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662157842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.128 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds