Wall clock time and date at job start Tue Mar 31 2020 22:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47318 * 2 1 4 4 C 1.52999 * 109.46680 * 120.00533 * 2 1 3 5 5 O 1.42900 * 109.47538 * 54.99799 * 4 2 1 6 6 C 1.42904 * 113.99704 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.46496 * 179.97438 * 6 5 4 8 8 C 1.52999 * 117.49927 * 243.74644 * 7 6 5 9 9 C 1.52999 * 117.49677 * 175.08892 * 7 6 5 10 10 N 1.46506 * 109.46882 * 240.00175 * 2 1 3 11 11 S 1.65595 * 120.00108 * 95.00276 * 10 2 1 12 12 O 1.42106 * 106.40041 * 311.46064 * 11 10 2 13 13 O 1.42094 * 106.40303 * 178.53915 * 11 10 2 14 14 C 1.76208 * 107.21711 * 64.99631 * 11 10 2 15 15 C 1.38630 * 119.74372 * 90.00149 * 14 11 10 16 16 C 1.37623 * 120.24117 * 180.27329 * 15 14 11 17 17 C 1.40707 * 119.74849 * 359.52215 * 16 15 14 18 18 C 1.41400 * 120.24843 * 180.22492 * 17 16 15 19 19 H 1.07994 * 120.00480 * 204.52708 * 18 17 16 20 20 C 1.39950 * 119.99509 * 24.53120 * 18 17 16 21 21 N 1.30821 * 119.99991 * 17.72383 * 20 18 17 22 22 Si 1.86800 * 119.99756 * 197.72017 * 20 18 17 23 23 H 1.48499 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46931 * 119.99981 * 22 20 18 25 25 H 1.48490 * 109.47155 * 239.99623 * 22 20 18 26 26 C 1.40715 * 119.51064 * 0.47652 * 17 16 15 27 27 C 1.37618 * 119.74364 * 359.74989 * 26 17 16 28 28 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47445 * 299.99840 * 1 2 3 30 30 H 1.09006 * 109.47071 * 59.99857 * 1 2 3 31 31 H 1.09005 * 109.46570 * 174.99915 * 4 2 1 32 32 H 1.08995 * 109.46722 * 294.99421 * 4 2 1 33 33 H 1.08997 * 109.47323 * 299.99740 * 6 5 4 34 34 H 1.08996 * 109.46953 * 60.00565 * 6 5 4 35 35 H 1.09002 * 115.55412 * 29.42303 * 7 6 5 36 36 H 1.09004 * 117.49966 * 0.02562 * 8 7 6 37 37 H 1.08998 * 117.50261 * 145.02461 * 8 7 6 38 38 H 1.08999 * 117.50228 * 214.98357 * 9 7 6 39 39 H 1.09006 * 117.49862 * 359.97438 * 9 7 6 40 40 H 0.97003 * 119.99721 * 274.99912 * 10 2 1 41 41 H 1.08001 * 119.88189 * 0.02562 * 15 14 11 42 42 H 1.08002 * 120.12205 * 179.72192 * 16 15 14 43 43 H 0.97005 * 119.99803 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.12804 * 179.73261 * 26 17 16 45 45 H 1.08002 * 119.87235 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7214 1.2492 5 8 1.4701 -2.0305 1.3093 6 6 1.8844 -2.7930 2.4447 7 6 1.2158 -4.1687 2.4063 8 6 0.2450 -4.5141 3.5373 9 6 1.6214 -5.1813 3.4792 10 7 2.0183 -0.6906 -1.1963 11 16 2.4122 0.1772 -2.5505 12 8 1.3247 1.0594 -2.7921 13 8 2.8776 -0.7634 -3.5085 14 6 3.7928 1.1910 -2.1371 15 6 5.0796 0.7089 -2.3207 16 6 6.1652 1.4899 -1.9960 17 6 5.9654 2.7857 -1.4854 18 6 7.0733 3.5989 -1.1527 19 1 6.9642 4.3884 -0.4240 20 6 8.3112 3.3807 -1.7680 21 7 8.3784 2.6849 -2.8738 22 14 9.8675 4.0829 -1.0102 23 1 9.5234 4.8244 0.2295 24 1 10.8010 2.9758 -0.6813 25 1 10.5154 5.0061 -1.9761 26 6 4.6548 3.2645 -1.3032 27 6 3.5840 2.4643 -1.6303 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7996 1.2055 32 1 1.7516 -0.1584 2.1369 33 1 2.9674 -2.9143 2.4254 34 1 1.5931 -2.2733 3.3574 35 1 0.9876 -4.5530 1.4122 36 1 0.0823 -3.7612 4.3085 37 1 -0.6217 -5.1260 3.2873 38 1 1.6597 -6.2318 3.1909 39 1 2.3649 -4.8676 4.2120 40 1 2.1109 -1.6562 -1.1949 41 1 5.2306 -0.2846 -2.7163 42 1 7.1668 1.1107 -2.1356 43 1 9.2365 2.5334 -3.3001 44 1 4.4899 4.2559 -0.9079 45 1 2.5772 2.8298 -1.4917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771760393.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:21 Heat of formation + Delta-G solvation = -112.557603 kcal Electronic energy + Delta-G solvation = -27113.777274 eV Core-core repulsion = 23222.446744 eV Total energy + Delta-G solvation = -3891.330530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.64522 -39.37412 -38.23065 -37.88625 -36.75663 -36.21022 -35.79860 -32.06555 -31.29895 -31.11079 -28.43385 -27.62126 -26.69429 -23.28406 -23.23793 -23.01687 -22.27890 -21.52295 -20.42211 -19.42708 -18.73759 -18.16133 -17.79394 -17.43270 -17.12504 -16.55820 -16.20183 -15.91187 -15.76658 -15.33856 -15.11377 -14.96907 -14.52128 -14.26715 -14.12763 -13.96418 -13.71197 -13.54923 -13.38997 -13.06936 -12.98304 -12.97577 -12.86632 -12.78618 -12.57067 -12.49032 -12.36515 -12.01873 -11.91724 -11.86275 -11.53919 -11.35384 -11.27848 -11.20696 -11.13396 -10.38906 -10.38590 -9.78451 -9.54548 -8.87167 -6.64616 -0.28251 0.48678 1.06052 1.36016 1.41827 1.53480 2.11208 2.25204 2.52858 2.56886 2.93982 3.01414 3.53161 3.63344 3.79164 3.93845 4.00606 4.09190 4.17036 4.30618 4.33619 4.37708 4.41272 4.45487 4.53896 4.66827 4.73306 4.79601 4.80706 4.88201 4.95167 5.03268 5.03846 5.11183 5.24047 5.24797 5.25827 5.31319 5.48726 5.53097 5.60104 5.77316 5.93826 6.15746 6.20315 6.29936 6.49895 6.68750 6.81666 8.08105 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.002942 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.551312 B = 9516.029933 C =10877.325820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.151 3.849 3 H 0.097 0.903 4 C 0.059 3.941 5 O -0.392 6.392 6 C 0.089 3.911 7 C -0.169 4.169 8 C -0.174 4.174 9 C -0.169 4.169 10 N -1.104 6.104 11 S 2.722 3.278 12 O -0.997 6.997 13 O -1.011 7.011 14 C -0.795 4.795 15 C -0.020 4.020 16 C -0.208 4.208 17 C 0.111 3.889 18 C -0.464 4.464 19 H 0.094 0.906 20 C 0.032 3.968 21 N -0.800 5.800 22 Si 0.993 3.007 23 H -0.251 1.251 24 H -0.262 1.262 25 H -0.264 1.264 26 C -0.254 4.254 27 C -0.001 4.001 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.423 0.577 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.298 0.702 44 H 0.114 0.886 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 -9.013 13.554 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.115 0.885 4 C -0.019 4.019 5 O -0.312 6.312 6 C 0.013 3.987 7 C -0.187 4.187 8 C -0.211 4.211 9 C -0.205 4.205 10 N -0.864 5.864 11 S 2.817 3.183 12 O -0.987 6.987 13 O -1.001 7.001 14 C -0.888 4.888 15 C -0.040 4.040 16 C -0.228 4.228 17 C 0.108 3.892 18 C -0.490 4.490 19 H 0.112 0.888 20 C -0.187 4.187 21 N -0.423 5.423 22 Si 0.812 3.188 23 H -0.174 1.174 24 H -0.187 1.187 25 H -0.189 1.189 26 C -0.274 4.274 27 C -0.021 4.021 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.258 0.742 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.091 -9.037 12.406 17.839 hybrid contribution 1.631 0.211 0.300 1.671 sum -7.460 -8.827 12.706 17.176 Atomic orbital electron populations 1.22192 0.93847 1.03223 1.02899 1.20977 0.95696 0.95660 0.83291 0.88513 1.22788 0.97521 0.84068 0.97508 1.87831 1.70392 1.26637 1.46299 1.22100 0.97837 0.90243 0.88509 1.22134 1.05116 0.95364 0.96125 1.23149 0.93842 1.03749 1.00383 1.23068 0.98612 0.98113 1.00755 1.55382 1.81936 1.19477 1.29578 1.00395 0.73094 0.72398 0.72376 1.93463 1.53536 1.67154 1.84507 1.93453 1.82988 1.63634 1.60068 1.29613 1.13894 1.12223 1.33117 1.20425 0.91859 0.97932 0.93829 1.21351 0.97723 0.95206 1.08567 1.18208 0.93182 0.91493 0.86330 1.20260 0.94122 1.14401 1.20263 0.88789 1.27063 1.04474 0.93717 0.93438 1.69876 1.29833 1.29059 1.13528 0.84991 0.75382 0.78932 0.79521 1.17377 1.18651 1.18880 1.21271 0.92573 1.00436 1.13097 1.20476 0.98440 0.91443 0.91759 0.91367 0.89743 0.92787 0.92641 0.89847 0.92916 0.92058 0.87934 0.88087 0.88188 0.87763 0.87941 0.74172 0.87157 0.87321 0.89113 0.86787 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.32 71.98 0.67 -3.08 16 2 C 0.15 3.79 3.18 44.99 0.14 3.93 16 3 H 0.10 2.47 7.21 -2.39 -0.02 2.45 16 4 C 0.06 1.25 5.73 71.98 0.41 1.67 16 5 O -0.39 -8.49 9.17 -148.98 -1.37 -9.86 16 6 C 0.09 1.57 6.22 71.98 0.45 2.02 16 7 C -0.17 -2.77 6.05 -10.80 -0.07 -2.83 16 8 C -0.17 -2.27 10.18 30.62 0.31 -1.96 16 9 C -0.17 -2.13 10.25 30.62 0.31 -1.81 16 10 N -1.10 -32.31 5.46 -169.37 -0.93 -33.24 16 11 S 2.72 103.55 5.64 -56.49 -0.32 103.23 16 12 O -1.00 -40.77 16.52 -128.00 -2.11 -42.89 16 13 O -1.01 -44.04 17.26 -128.00 -2.21 -46.25 16 14 C -0.80 -34.47 5.84 22.46 0.13 -34.33 16 15 C -0.02 -0.96 9.49 22.22 0.21 -0.75 16 16 C -0.21 -10.67 8.70 22.73 0.20 -10.48 16 17 C 0.11 5.69 5.57 -21.29 -0.12 5.57 16 18 C -0.46 -22.81 9.06 23.46 0.21 -22.59 16 19 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 20 C 0.03 1.49 5.14 85.26 0.44 1.92 16 21 N -0.80 -39.10 10.95 21.83 0.24 -38.86 16 22 Si 0.99 34.22 29.59 68.60 2.03 36.25 16 23 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 24 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 25 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 26 C -0.25 -11.75 9.80 22.73 0.22 -11.53 16 27 C 0.00 -0.06 8.86 22.22 0.20 0.13 16 28 H 0.07 1.56 7.56 -2.39 -0.02 1.54 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.42 7.64 -2.38 -0.02 1.40 16 31 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.91 7.87 -2.39 -0.02 0.89 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 1.18 8.03 -2.38 -0.02 1.16 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.42 11.21 8.58 -96.74 -0.83 10.38 16 41 H 0.11 4.90 7.60 -2.91 -0.02 4.88 16 42 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 43 H 0.30 12.93 8.30 -92.70 -0.77 12.17 16 44 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 45 H 0.13 4.79 7.60 -2.91 -0.02 4.76 16 Total: -1.00 -63.96 386.97 -0.77 -64.73 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: 0.17 Total: 41.00 kcal Atomic # 6 Polarization: -77.85 SS G_CDS: 3.73 Total: -74.12 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -0.69 Total: -72.10 kcal Atomic # 8 Polarization: -93.30 SS G_CDS: -5.69 Total: -98.99 kcal Atomic # 14 Polarization: 34.22 SS G_CDS: 2.03 Total: 36.25 kcal Atomic # 16 Polarization: 103.55 SS G_CDS: -0.32 Total: 103.23 kcal Total: -63.96 -0.77 -64.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771760393.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.825 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds