Wall clock time and date at job start Tue Mar 31 2020 22:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42095 * 110.54257 * 2 1 4 4 O 1.42096 * 110.53838 * 136.74494 * 2 1 3 5 5 C 1.76195 * 104.45134 * 248.37018 * 2 1 3 6 6 C 1.38230 * 119.99939 * 269.72798 * 5 2 1 7 7 C 1.38243 * 119.99747 * 179.74053 * 6 5 2 8 8 C 1.38234 * 119.99845 * 0.55629 * 7 6 5 9 9 C 1.50700 * 119.99991 * 179.71943 * 8 7 6 10 10 H 1.08993 * 109.47462 * 204.97742 * 9 8 7 11 11 O 1.42902 * 109.47235 * 324.97958 * 9 8 7 12 12 C 1.53002 * 109.46951 * 84.97399 * 9 8 7 13 13 N 1.46895 * 109.47123 * 179.97438 * 12 9 8 14 14 C 1.46904 * 111.00174 * 180.02562 * 13 12 9 15 15 C 1.52999 * 109.47203 * 185.34988 * 14 13 12 16 16 C 1.50699 * 115.54908 * 65.04941 * 15 14 13 17 17 H 1.07999 * 120.00358 * 265.44367 * 16 15 14 18 18 C 1.37881 * 119.99543 * 85.44431 * 16 15 14 19 19 N 1.31507 * 120.00233 * 353.59560 * 18 16 15 20 20 Si 1.86810 * 119.99759 * 173.59567 * 18 16 15 21 21 H 1.48503 * 109.47135 * 89.99829 * 20 18 16 22 22 H 1.48494 * 109.46986 * 209.99800 * 20 18 16 23 23 H 1.48498 * 109.46928 * 330.00320 * 20 18 16 24 24 C 1.53004 * 117.50270 * 279.37975 * 15 14 13 25 25 C 1.52999 * 117.49880 * 210.72209 * 15 14 13 26 26 C 1.38237 * 119.99916 * 359.70023 * 8 7 6 27 27 C 1.38232 * 120.00259 * 0.02562 * 26 8 7 28 28 H 1.08998 * 109.46799 * 51.62862 * 1 2 3 29 29 H 1.09001 * 109.47068 * 291.62854 * 1 2 3 30 30 H 1.08999 * 109.47240 * 171.62924 * 1 2 3 31 31 H 1.07998 * 120.00319 * 0.02562 * 6 5 2 32 32 H 1.07998 * 119.99590 * 180.27049 * 7 6 5 33 33 H 0.96702 * 113.99993 * 59.99871 * 11 9 8 34 34 H 1.08993 * 109.47318 * 300.00432 * 12 9 8 35 35 H 1.09001 * 109.46813 * 60.00617 * 12 9 8 36 36 H 1.00903 * 111.00528 * 303.95661 * 13 12 9 37 37 H 1.09000 * 109.47020 * 305.35286 * 14 13 12 38 38 H 1.09002 * 109.47091 * 65.35435 * 14 13 12 39 39 H 0.97004 * 120.00300 * 179.97438 * 19 18 16 40 40 H 1.09004 * 117.49366 * 0.02562 * 24 15 14 41 41 H 1.08996 * 117.49757 * 145.01453 * 24 15 14 42 42 H 1.09004 * 117.49545 * 214.98391 * 25 15 14 43 43 H 1.08994 * 117.49884 * 359.97336 * 25 15 14 44 44 H 1.08006 * 119.99591 * 180.02562 * 26 8 7 45 45 H 1.07994 * 120.00074 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9691 0.9118 5 6 2.2538 -0.6289 -1.5861 6 6 2.4317 -1.9879 -1.7656 7 6 2.7715 -2.4818 -3.0113 8 6 2.9445 -1.6156 -4.0746 9 6 3.3210 -2.1535 -5.4311 10 1 3.8322 -1.3774 -6.0006 11 8 4.1884 -3.2781 -5.2736 12 6 2.0570 -2.5850 -6.1774 13 7 2.4239 -3.1086 -7.4999 14 6 1.2326 -3.5332 -8.2472 15 6 1.6617 -4.1932 -9.5591 16 6 2.4313 -5.4810 -9.4174 17 1 3.5113 -5.4680 -9.4205 18 6 1.7567 -6.6761 -9.2838 19 7 0.4481 -6.6815 -9.1534 20 14 2.7016 -8.2876 -9.2880 21 1 3.0903 -8.6371 -7.8981 22 1 1.8438 -9.3629 -9.8474 23 1 3.9219 -8.1436 -10.1219 24 6 2.0319 -3.2736 -10.7246 25 6 0.7198 -4.0612 -10.7575 26 6 2.7716 -0.2561 -3.8937 27 6 2.4264 0.2373 -2.6495 28 1 -0.3633 0.6379 -0.8057 29 1 -0.3633 0.3788 0.9553 30 1 -0.3634 -1.0167 -0.1496 31 1 2.3009 -2.6642 -0.9339 32 1 2.9062 -3.5440 -3.1526 33 1 3.7981 -4.0091 -4.7751 34 1 1.5458 -3.3610 -5.6079 35 1 1.3954 -1.7271 -6.2976 36 1 2.9555 -2.4292 -8.0232 37 1 0.6644 -4.2466 -7.6503 38 1 0.6109 -2.6644 -8.4639 39 1 -0.0265 -7.5222 -9.0598 40 1 1.9700 -2.1984 -10.5566 41 1 2.8318 -3.6003 -11.3890 42 1 0.6570 -4.9059 -11.4436 43 1 -0.2059 -3.5046 -10.6112 44 1 2.9064 0.4206 -4.7246 45 1 2.2918 1.2995 -2.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819281663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:00 Heat of formation + Delta-G solvation = -61.688074 kcal Electronic energy + Delta-G solvation = -26622.318246 eV Core-core repulsion = 22733.193584 eV Total energy + Delta-G solvation = -3889.124661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 6.34 seconds Orbital eigenvalues (eV) -40.01547 -37.53689 -37.45470 -36.65246 -36.27988 -33.95120 -32.10596 -31.81690 -31.32544 -29.95942 -28.22999 -25.64106 -24.57121 -23.23272 -22.68850 -21.43762 -20.98967 -19.41242 -18.99934 -18.31825 -17.04997 -16.60517 -16.54362 -16.28710 -15.65688 -15.31274 -14.97539 -14.72998 -14.50116 -14.09404 -13.96797 -13.85807 -13.66521 -13.64488 -13.48425 -13.27470 -13.04073 -12.59058 -12.43333 -12.33517 -12.00551 -11.63510 -11.59036 -11.48896 -11.25407 -11.20176 -10.98554 -10.91570 -10.68783 -10.45431 -10.21130 -10.07282 -9.55846 -9.35042 -9.30074 -8.80207 -8.37129 -8.07555 -7.60374 -5.95958 -3.96842 -0.32815 0.48320 0.99629 2.49158 3.07078 3.34563 3.40938 3.45758 3.57516 3.73320 4.19268 4.32766 4.33694 4.45175 4.48281 4.56950 4.58989 4.93755 5.00781 5.04494 5.14813 5.18613 5.24159 5.34374 5.40377 5.45816 5.58875 5.71958 5.74916 5.83185 5.91312 6.14007 6.24714 6.28952 6.45743 6.50293 6.58330 6.72189 6.83428 7.10424 7.45919 7.53307 7.70039 7.87507 7.97847 8.08513 8.55603 9.02763 9.66292 11.13945 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.002236 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.970127 B =12517.804581 C =13031.823076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.940 6.940 4 O -0.939 6.939 5 C -0.666 4.666 6 C -0.020 4.020 7 C -0.131 4.131 8 C -0.052 4.052 9 C 0.143 3.857 10 H 0.108 0.892 11 O -0.534 6.534 12 C 0.035 3.965 13 N -0.658 5.658 14 C 0.108 3.892 15 C 0.053 3.947 16 C -0.467 4.467 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.275 1.275 24 C -0.215 4.215 25 C -0.159 4.159 26 C -0.133 4.133 27 C -0.023 4.023 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.374 0.626 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.331 0.669 37 H 0.075 0.925 38 H -0.007 1.007 39 H 0.257 0.743 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.134 0.866 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 14.408 16.618 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.683 3.317 3 O -0.937 6.937 4 O -0.936 6.936 5 C -0.753 4.753 6 C -0.039 4.039 7 C -0.150 4.150 8 C -0.053 4.053 9 C 0.083 3.917 10 H 0.126 0.874 11 O -0.340 6.340 12 C -0.095 4.095 13 N -0.288 5.288 14 C -0.020 4.020 15 C 0.052 3.948 16 C -0.505 4.505 17 H 0.078 0.922 18 C -0.135 4.135 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.200 1.200 24 C -0.253 4.253 25 C -0.197 4.197 26 C -0.152 4.152 27 C -0.042 4.042 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.223 0.777 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.011 0.989 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.152 0.848 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.910 14.261 17.172 22.340 hybrid contribution -1.009 -0.656 -0.710 1.398 sum -1.919 13.605 16.462 21.442 Atomic orbital electron populations 1.30226 1.25721 1.12231 1.11818 1.05039 0.77790 0.74562 0.74329 1.93582 1.77354 1.36632 1.86160 1.93588 1.77325 1.61637 1.61066 1.30454 1.19878 1.03084 1.21918 1.20912 0.92200 0.93149 0.97624 1.21100 1.00897 1.00445 0.92535 1.21134 0.92964 0.94232 0.96946 1.20961 0.91680 0.89314 0.89739 0.87414 1.86667 1.41840 1.27017 1.78427 1.22573 0.94898 0.98440 0.93604 1.60166 1.23370 1.43201 1.02046 1.21565 0.88970 0.95436 0.96055 1.18802 0.97274 0.94062 0.84622 1.20316 0.92339 0.88828 1.49023 0.92182 1.24936 0.94781 0.98744 0.95051 1.70007 1.06714 1.26052 1.49820 0.86656 0.79870 0.83599 0.78186 1.20768 1.21546 1.19995 1.22993 0.99760 0.95295 1.07239 1.22521 0.91209 1.00791 1.05165 1.21145 1.01402 0.94913 0.97701 1.20905 0.92488 0.99325 0.91445 0.84945 0.85053 0.84872 0.83989 0.84752 0.77744 0.90776 0.95514 0.85138 0.90630 0.98893 0.93382 0.92266 0.90467 0.90031 0.92230 0.84841 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.25 10.80 101.05 1.09 -1.16 16 2 S 2.50 18.52 5.80 -107.50 -0.62 17.90 16 3 O -0.94 -9.84 17.13 -57.54 -0.99 -10.82 16 4 O -0.94 -10.02 17.12 -57.54 -0.98 -11.00 16 5 C -0.67 -5.88 5.66 -39.58 -0.22 -6.11 16 6 C -0.02 -0.19 9.47 -39.58 -0.37 -0.56 16 7 C -0.13 -1.32 9.33 -39.58 -0.37 -1.69 16 8 C -0.05 -0.56 5.00 -104.62 -0.52 -1.08 16 9 C 0.14 1.76 3.42 -27.88 -0.10 1.67 16 10 H 0.11 1.26 8.05 -51.93 -0.42 0.85 16 11 O -0.53 -7.63 13.00 -35.23 -0.46 -8.08 16 12 C 0.04 0.50 5.32 -3.83 -0.02 0.48 16 13 N -0.66 -12.01 6.24 -113.78 -0.71 -12.72 16 14 C 0.11 2.30 5.51 -3.82 -0.02 2.28 16 15 C 0.05 1.27 1.55 -155.66 -0.24 1.02 16 16 C -0.47 -12.55 8.74 -34.44 -0.30 -12.85 16 17 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 18 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 19 N -0.89 -24.80 12.92 55.43 0.72 -24.08 16 20 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 24 C -0.22 -4.58 9.96 -26.69 -0.27 -4.85 16 25 C -0.16 -3.67 9.41 -26.70 -0.25 -3.92 16 26 C -0.13 -1.27 9.68 -39.58 -0.38 -1.66 16 27 C -0.02 -0.20 9.47 -39.58 -0.37 -0.58 16 28 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.14 1.07 7.57 -52.49 -0.40 0.67 16 32 H 0.13 1.16 6.61 -52.49 -0.35 0.81 16 33 H 0.37 4.41 7.39 45.56 0.34 4.75 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.33 5.74 8.79 -39.29 -0.35 5.39 16 37 H 0.08 1.81 8.13 -51.93 -0.42 1.39 16 38 H -0.01 -0.14 8.09 -51.93 -0.42 -0.56 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 45 H 0.14 0.98 7.57 -52.49 -0.40 0.58 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -35.24 391.44 -10.80 -46.04 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.18 Total: 7.96 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -2.45 Total: -27.30 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.01 Total: -36.81 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -2.43 Total: -29.91 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 18.52 SS G_CDS: -0.62 Total: 17.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.24 -10.80 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819281663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.649 kcal (2) G-P(sol) polarization free energy of solvation -35.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.34 seconds