Wall clock time and date at job start Tue Mar 31 2020 22:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42099 * 110.54039 * 2 1 4 4 O 1.42094 * 110.54008 * 223.24612 * 2 1 3 5 5 C 1.76202 * 104.44775 * 111.62253 * 2 1 3 6 6 C 1.38104 * 119.75278 * 244.67268 * 5 2 1 7 7 C 1.38265 * 119.88761 * 180.02562 * 6 5 2 8 8 C 1.37857 * 119.95368 * 0.14015 * 7 6 5 9 9 C 1.39568 * 120.41480 * 359.97438 * 8 7 6 10 10 C 1.38416 * 119.39513 * 359.76850 * 9 8 7 11 11 C 1.50803 * 122.00837 * 180.40403 * 10 9 8 12 12 C 1.53040 * 109.66541 * 344.33927 * 11 10 9 13 13 C 1.53379 * 107.98874 * 47.24626 * 12 11 10 14 14 N 1.39413 * 117.65741 * 179.35456 * 9 8 7 15 15 C 1.46897 * 110.99988 * 34.58072 * 14 9 8 16 16 C 1.52997 * 109.46806 * 169.99892 * 15 14 9 17 17 O 1.42896 * 109.47271 * 65.00892 * 16 15 14 18 18 C 1.42895 * 114.00188 * 179.97438 * 17 16 15 19 19 C 1.50708 * 109.46915 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00107 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99701 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00448 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47226 * 90.00009 * 23 21 19 25 25 H 1.48504 * 109.47474 * 210.00031 * 23 21 19 26 26 H 1.48507 * 109.47354 * 330.00328 * 23 21 19 27 27 H 1.09000 * 109.47582 * 301.26526 * 1 2 3 28 28 H 1.09001 * 109.47430 * 61.26369 * 1 2 3 29 29 H 1.08998 * 109.47291 * 181.26442 * 1 2 3 30 30 H 1.07992 * 120.05717 * 359.97438 * 6 5 2 31 31 H 1.08003 * 120.02450 * 180.11389 * 7 6 5 32 32 H 1.08002 * 119.79066 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.43648 * 224.28344 * 11 10 9 34 34 H 1.08996 * 109.43895 * 104.40310 * 11 10 9 35 35 H 1.09000 * 109.76536 * 166.88098 * 12 11 10 36 36 H 1.08996 * 109.76887 * 287.60587 * 12 11 10 37 37 H 1.08998 * 109.61152 * 51.54435 * 13 12 11 38 38 H 1.09005 * 109.60534 * 172.04221 * 13 12 11 39 39 H 1.08993 * 109.47570 * 290.00491 * 15 14 9 40 40 H 1.09006 * 109.46821 * 50.00339 * 15 14 9 41 41 H 1.09010 * 109.46693 * 185.00296 * 16 15 14 42 42 H 1.08997 * 109.47473 * 304.99875 * 16 15 14 43 43 H 1.08995 * 109.47517 * 299.99425 * 18 17 16 44 44 H 1.08995 * 109.47277 * 60.00001 * 18 17 16 45 45 H 0.96997 * 120.00195 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9116 5 6 2.2536 -0.6288 1.5862 6 6 2.9213 0.1813 2.4836 7 6 3.2681 -0.3094 3.7288 8 6 2.9494 -1.6063 4.0708 9 6 2.2769 -2.4303 3.1672 10 6 1.9273 -1.9324 1.9239 11 6 1.1922 -2.7678 0.9061 12 6 1.2713 -4.2450 1.2984 13 6 0.9241 -4.3587 2.7880 14 7 1.9955 -3.7358 3.5676 15 6 1.7024 -3.7937 5.0059 16 6 1.1594 -5.1795 5.3602 17 8 2.1762 -6.1595 5.1420 18 6 1.7701 -7.4957 5.4450 19 6 2.9137 -8.4406 5.1792 20 1 3.8563 -8.0590 4.8158 21 6 2.7567 -9.7924 5.4011 22 7 1.6089 -10.2572 5.8442 23 14 4.1738 -10.9638 5.0711 24 1 4.9926 -11.1093 6.3015 25 1 3.6373 -12.2903 4.6737 26 1 5.0183 -10.4230 3.9758 27 1 -0.3634 0.5333 0.8784 28 1 -0.3634 0.4941 -0.9011 29 1 -0.3634 -1.0274 0.0227 30 1 3.1729 1.1960 2.2128 31 1 3.7886 0.3228 4.4330 32 1 3.2212 -1.9867 5.0444 33 1 1.6471 -2.6281 -0.0746 34 1 0.1479 -2.4578 0.8685 35 1 0.5586 -4.8216 0.7088 36 1 2.2804 -4.6188 1.1255 37 1 -0.0167 -3.8447 2.9847 38 1 0.8340 -5.4096 3.0634 39 1 2.6155 -3.6058 5.5707 40 1 0.9585 -3.0371 5.2558 41 1 0.8588 -5.1949 6.4079 42 1 0.2976 -5.4037 4.7317 43 1 1.4825 -7.5590 6.4944 44 1 0.9209 -7.7683 4.8184 45 1 1.4987 -11.2081 6.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261237378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:50 Heat of formation + Delta-G solvation = -72.861468 kcal Electronic energy + Delta-G solvation = -27732.609444 eV Core-core repulsion = 23843.000268 eV Total energy + Delta-G solvation = -3889.609176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.84440 -37.69505 -37.46822 -36.28238 -36.16649 -34.65082 -32.75966 -30.76489 -30.66494 -29.87493 -28.75276 -26.92323 -25.18386 -23.81532 -23.17514 -22.37159 -21.16192 -19.82248 -19.04607 -17.82880 -16.80546 -16.47844 -16.44829 -16.22529 -16.06257 -15.75118 -15.61101 -15.00796 -14.55811 -14.35469 -14.20754 -14.00850 -13.67691 -13.56127 -13.45192 -13.10747 -13.02149 -12.75486 -12.53729 -12.37437 -12.22173 -12.05322 -11.90967 -11.54497 -11.40021 -11.23775 -11.13647 -10.92432 -10.89012 -10.79855 -10.45939 -10.44900 -10.13490 -9.93430 -9.23279 -9.15843 -8.89377 -8.24432 -7.70849 -6.15177 -4.16693 -0.21547 0.68304 1.20894 2.59377 3.19397 3.28401 3.33687 3.39589 3.50754 3.74247 3.89470 4.29902 4.36687 4.38757 4.53405 4.60507 4.64313 4.78536 4.82512 5.04748 5.09394 5.11533 5.19466 5.21686 5.30402 5.31816 5.38123 5.45826 5.55236 5.67411 5.73975 5.80471 5.87607 5.91930 6.01190 6.04649 6.10034 6.19225 6.21427 6.52318 6.97179 7.01957 7.23911 7.34265 7.75965 8.09475 8.49830 8.96770 9.48550 10.96318 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.002541 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.950421 B =11017.913048 C =11420.407665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.500 3.500 3 O -0.943 6.943 4 O -0.933 6.933 5 C -0.631 4.631 6 C -0.061 4.061 7 C -0.113 4.113 8 C -0.112 4.112 9 C 0.123 3.877 10 C -0.035 4.035 11 C -0.140 4.140 12 C -0.116 4.116 13 C 0.050 3.950 14 N -0.475 5.475 15 C 0.061 3.939 16 C 0.054 3.946 17 O -0.382 6.382 18 C 0.195 3.805 19 C -0.513 4.513 20 H 0.067 0.933 21 C 0.056 3.944 22 N -0.900 5.900 23 Si 0.907 3.093 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.271 1.271 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 22.743 -8.287 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.681 3.319 3 O -0.940 6.940 4 O -0.931 6.931 5 C -0.719 4.719 6 C -0.081 4.081 7 C -0.133 4.133 8 C -0.133 4.133 9 C 0.022 3.978 10 C -0.040 4.040 11 C -0.177 4.177 12 C -0.154 4.154 13 C -0.076 4.076 14 N -0.186 5.186 15 C -0.064 4.064 16 C -0.024 4.024 17 O -0.301 6.301 18 C 0.121 3.879 19 C -0.551 4.551 20 H 0.085 0.915 21 C -0.145 4.145 22 N -0.539 5.539 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.195 1.195 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.218 22.470 -8.995 24.759 hybrid contribution -0.593 -0.785 1.059 1.445 sum -5.811 21.685 -7.936 23.812 Atomic orbital electron populations 1.30354 1.25871 1.12457 1.11969 1.05075 0.77801 0.74421 0.74603 1.93551 1.77503 1.36652 1.86270 1.93556 1.77199 1.60896 1.61406 1.30087 1.15652 1.03270 1.22926 1.20750 0.95458 0.99269 0.92666 1.21047 1.00055 0.95509 0.96689 1.21502 0.98335 0.93730 0.99766 1.18812 0.97411 0.87880 0.93723 1.19077 0.98235 0.92106 0.94565 1.21533 0.99816 0.96443 0.99898 1.21639 1.04241 0.94459 0.95021 1.22353 0.90473 1.01601 0.93148 1.57834 1.41698 1.13762 1.05347 1.22406 1.01272 0.96862 0.85857 1.22432 0.92232 0.88677 0.99028 1.87977 1.36351 1.17557 1.88236 1.20208 0.96268 0.76896 0.94577 1.21041 0.98919 0.90872 1.44300 0.91484 1.24944 0.96384 0.98051 0.95102 1.69957 1.23935 1.14326 1.45679 0.86341 0.81749 0.79663 0.78782 1.20467 1.21076 1.19547 0.84852 0.84923 0.84629 0.84086 0.85119 0.84739 0.86259 0.90120 0.89826 0.89672 0.93853 0.87692 0.89087 0.92722 0.93455 0.93831 0.97831 0.97833 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.08 10.46 101.05 1.06 -2.03 16 2 S 2.50 22.79 5.23 -107.50 -0.56 22.23 16 3 O -0.94 -10.91 16.71 -57.54 -0.96 -11.87 16 4 O -0.93 -11.35 15.29 -57.54 -0.88 -12.23 16 5 C -0.63 -6.89 5.58 -39.51 -0.22 -7.11 16 6 C -0.06 -0.65 9.49 -39.62 -0.38 -1.02 16 7 C -0.11 -1.17 10.03 -39.71 -0.40 -1.57 16 8 C -0.11 -1.34 9.00 -39.23 -0.35 -1.69 16 9 C 0.12 1.65 5.77 -83.85 -0.48 1.17 16 10 C -0.04 -0.43 5.73 -104.39 -0.60 -1.03 16 11 C -0.14 -1.47 4.42 -27.81 -0.12 -1.59 16 12 C -0.12 -1.39 6.19 -26.51 -0.16 -1.55 16 13 C 0.05 0.67 4.51 -3.89 -0.02 0.65 16 14 N -0.48 -7.00 4.63 -171.30 -0.79 -7.79 16 15 C 0.06 0.84 4.68 -3.83 -0.02 0.83 16 16 C 0.05 0.92 5.36 37.16 0.20 1.12 16 17 O -0.38 -8.75 10.13 -35.23 -0.36 -9.11 16 18 C 0.19 5.16 5.69 36.01 0.20 5.36 16 19 C -0.51 -14.89 9.43 -34.44 -0.32 -15.21 16 20 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 23 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 27 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.14 0.51 5.57 -51.93 -0.29 0.22 16 30 H 0.14 1.30 7.19 -52.49 -0.38 0.92 16 31 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.13 1.45 6.12 -52.49 -0.32 1.13 16 33 H 0.12 1.27 5.30 -51.93 -0.28 1.00 16 34 H 0.08 0.58 6.02 -51.93 -0.31 0.26 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.10 1.63 6.10 -51.93 -0.32 1.32 16 39 H 0.09 1.25 6.68 -51.93 -0.35 0.90 16 40 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 41 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 42 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 43 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 44 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -36.28 364.29 -10.38 -46.66 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.32 Total: -2.15 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -1.71 Total: -22.17 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: -0.06 Total: -33.58 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -2.20 Total: -33.21 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -0.56 Total: 22.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.28 -10.38 -46.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261237378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.199 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds