Wall clock time and date at job start Tue Mar 31 2020 22:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48497 * 109.47489 * 240.00911 * 3 2 1 5 5 H 1.48510 * 109.46863 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46935 * 120.00472 * 3 2 1 7 7 C 1.39934 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00306 * 175.30053 * 7 2 1 9 9 C 1.41441 * 119.99770 * 355.30265 * 7 2 1 10 10 C 1.40786 * 120.17848 * 214.84696 * 9 7 2 11 11 C 1.37710 * 120.03922 * 180.02562 * 10 9 7 12 12 C 1.38362 * 120.41295 * 359.69425 * 11 10 9 13 13 C 1.39878 * 120.35940 * 0.55744 * 12 11 10 14 14 C 1.47888 * 120.02794 * 179.74047 * 13 12 11 15 15 O 1.21543 * 120.00216 * 179.72252 * 14 13 12 16 16 N 1.34779 * 119.99970 * 359.72877 * 14 13 12 17 17 C 1.46496 * 119.99944 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46880 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46913 * 180.02562 * 18 17 16 20 20 O 1.21287 * 120.00471 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99977 * 179.97438 * 19 18 17 22 22 C 1.39956 * 120.00038 * 174.27560 * 21 19 18 23 23 C 1.39279 * 120.48844 * 333.93973 * 22 21 19 24 24 C 1.38501 * 118.36002 * 179.76102 * 23 22 21 25 25 C 1.38271 * 119.23821 * 0.54242 * 24 23 22 26 26 N 1.31861 * 120.91471 * 359.69724 * 25 24 23 27 27 C 1.31817 * 121.79553 * 0.02758 * 26 25 24 28 28 C 1.39030 * 119.94820 * 359.47129 * 13 12 11 29 29 H 0.97003 * 120.00349 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.97673 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.78802 * 179.97438 * 11 10 9 32 32 H 1.08005 * 119.82152 * 180.27760 * 12 11 10 33 33 H 0.97004 * 119.99873 * 359.97438 * 16 14 13 34 34 H 1.09002 * 109.47330 * 60.00141 * 17 16 14 35 35 H 1.08997 * 109.47231 * 299.99959 * 17 16 14 36 36 H 1.09002 * 109.46971 * 299.99439 * 18 17 16 37 37 H 1.08993 * 109.47320 * 59.99915 * 18 17 16 38 38 H 0.96999 * 119.99840 * 354.27130 * 21 19 18 39 39 H 1.08004 * 120.81508 * 0.02562 * 23 22 21 40 40 H 1.08003 * 120.38134 * 180.26224 * 24 23 22 41 41 H 1.07995 * 119.54256 * 179.72192 * 25 24 23 42 42 H 1.08006 * 119.66547 * 179.97438 * 27 26 25 43 43 H 1.08008 * 120.20441 * 180.23184 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0958 1.6966 -1.2126 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0852 -1.2133 -0.0772 9 6 1.3044 -2.4347 0.0992 10 6 1.8652 -3.5187 0.8011 11 6 1.1779 -4.7082 0.8960 12 6 -0.0679 -4.8460 0.3100 13 6 -0.6388 -3.7819 -0.3958 14 6 -1.9683 -3.9391 -1.0242 15 8 -2.4661 -3.0124 -1.6331 16 7 -2.6280 -5.1099 -0.9215 17 6 -3.9452 -5.2654 -1.5434 18 6 -4.4704 -6.6779 -1.2789 19 6 -5.8252 -6.8382 -1.9192 20 8 -6.3216 -5.9138 -2.5277 21 7 -6.4848 -8.0090 -1.8166 22 6 -7.7911 -8.1215 -2.3063 23 6 -8.6111 -6.9993 -2.3964 24 6 -9.8943 -7.1603 -2.8921 25 6 -10.3200 -8.4211 -3.2676 26 7 -9.5205 -9.4646 -3.1651 27 6 -8.2906 -9.3545 -2.7038 28 6 0.0422 -2.5743 -0.5015 29 1 -0.4851 0.8400 0.0004 30 1 2.8351 -3.4171 1.2654 31 1 1.6122 -5.5373 1.4351 32 1 -0.6005 -5.7818 0.3942 33 1 -2.2305 -5.8495 -0.4357 34 1 -3.8609 -5.1041 -2.6181 35 1 -4.6355 -4.5362 -1.1195 36 1 -3.7802 -7.4075 -1.7025 37 1 -4.5548 -6.8389 -0.2042 38 1 -6.0542 -8.7737 -1.4034 39 1 -8.2536 -6.0269 -2.0913 40 1 -10.5563 -6.3115 -2.9800 41 1 -11.3212 -8.5529 -3.6505 42 1 -7.6652 -10.2323 -2.6341 43 1 -0.3964 -1.7487 -1.0423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066098132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:24 Heat of formation + Delta-G solvation = -15.683539 kcal Electronic energy + Delta-G solvation = -26738.169104 eV Core-core repulsion = 22747.888149 eV Total energy + Delta-G solvation = -3990.280955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27379 -39.71518 -39.11406 -37.08716 -35.62564 -34.89091 -33.67325 -32.56068 -31.61994 -30.40461 -29.51625 -29.37113 -25.49479 -24.93037 -24.14292 -23.20194 -21.95242 -20.97747 -20.80138 -19.67397 -18.41166 -17.71537 -17.54016 -17.23043 -16.50528 -16.14328 -15.92270 -15.42250 -14.98419 -14.77721 -14.66391 -14.60907 -14.18986 -14.14284 -13.67723 -13.49108 -13.22215 -13.12771 -12.62124 -12.55784 -12.52497 -12.07244 -11.81484 -11.58029 -11.43085 -11.15624 -11.06719 -10.75753 -10.61973 -10.47416 -10.06495 -10.02467 -9.76750 -9.71773 -9.29133 -9.04137 -8.75439 -8.69656 -7.67040 -7.42762 -6.64955 -4.46945 0.62762 0.91246 2.12365 2.15414 2.39022 2.81607 3.08943 3.10768 3.13978 3.46263 3.58384 3.83827 3.96241 4.09705 4.23264 4.43978 4.49653 4.65041 4.67954 4.72728 4.76395 4.93779 5.10910 5.19847 5.52112 5.58358 5.62135 5.77698 5.79305 5.83439 5.95983 6.06497 6.19448 6.36495 6.65728 6.75350 6.77427 6.94448 6.99510 7.24626 7.36225 7.53566 7.59924 7.64001 7.72090 7.89601 8.06886 8.19263 8.50967 8.82364 8.83861 8.91506 10.25683 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.001754 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.689155 B =15962.234367 C =16965.683180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.068 3.932 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.093 3.907 10 C -0.198 4.198 11 C -0.108 4.108 12 C -0.205 4.205 13 C -0.135 4.135 14 C 0.564 3.436 15 O -0.539 6.539 16 N -0.741 5.741 17 C 0.136 3.864 18 C -0.151 4.151 19 C 0.520 3.480 20 O -0.508 6.508 21 N -0.669 5.669 22 C 0.101 3.899 23 C -0.088 4.088 24 C -0.148 4.148 25 C 0.074 3.926 26 N -0.466 5.466 27 C 0.070 3.930 28 C -0.080 4.080 29 H 0.282 0.718 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.415 0.585 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.344 -17.252 -1.194 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.148 4.148 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.097 0.903 9 C 0.091 3.909 10 C -0.218 4.218 11 C -0.126 4.126 12 C -0.225 4.225 13 C -0.139 4.139 14 C 0.355 3.645 15 O -0.416 6.416 16 N -0.396 5.396 17 C 0.012 3.988 18 C -0.192 4.192 19 C 0.307 3.693 20 O -0.382 6.382 21 N -0.315 5.315 22 C 0.004 3.996 23 C -0.116 4.116 24 C -0.168 4.168 25 C -0.084 4.084 26 N -0.174 5.174 27 C -0.090 4.090 28 C -0.101 4.101 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.252 0.748 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.520 -16.498 -2.311 22.768 hybrid contribution 1.026 0.694 0.869 1.513 sum -14.494 -15.804 -1.443 21.492 Atomic orbital electron populations 1.69709 1.07236 1.29380 1.36503 1.25927 0.94976 1.01354 0.92554 0.86213 0.79757 0.80037 0.79747 1.18967 1.20325 1.19075 1.19492 0.94781 0.89940 1.45299 0.90338 1.17666 0.91953 0.92354 0.88947 1.21272 1.01072 0.95025 1.04398 1.20456 0.95035 0.96822 1.00280 1.20406 0.97722 0.97043 1.07316 1.19551 0.93706 0.96847 1.03766 1.18826 0.85549 0.81107 0.79063 1.90728 1.68850 1.39734 1.42257 1.45907 1.19449 1.16053 1.58188 1.20883 0.84875 0.93601 0.99478 1.21854 0.93587 1.00681 1.03040 1.20777 0.87232 0.81684 0.79559 1.90753 1.68317 1.39524 1.39564 1.43524 1.12967 1.14984 1.60015 1.18890 0.85408 0.96014 0.99256 1.21865 0.92586 0.99723 0.97441 1.22141 0.96246 0.99119 0.99332 1.22730 0.99576 0.88203 0.97886 1.67633 1.03854 1.33463 1.12442 1.22528 0.93325 0.95603 0.97580 1.21970 0.95451 0.94773 0.97869 0.90626 0.88453 0.88787 0.89168 0.76685 0.90846 0.90864 0.87544 0.87448 0.74812 0.82801 0.84299 0.82562 0.82581 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.46 10.60 55.55 0.59 -20.87 16 2 C 0.07 1.74 5.42 -17.35 -0.09 1.64 16 3 Si 0.92 19.01 29.56 -169.99 -5.03 13.99 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.18 9.04 -37.73 -0.34 -12.52 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.09 2.43 5.55 -106.87 -0.59 1.84 16 10 C -0.20 -4.57 9.78 -38.81 -0.38 -4.95 16 11 C -0.11 -2.19 10.01 -39.73 -0.40 -2.59 16 12 C -0.20 -4.06 9.55 -38.92 -0.37 -4.44 16 13 C -0.14 -3.11 5.87 -105.04 -0.62 -3.72 16 14 C 0.56 12.05 7.77 -12.31 -0.10 11.95 16 15 O -0.54 -13.60 16.33 5.33 0.09 -13.51 16 16 N -0.74 -11.26 5.51 -61.24 -0.34 -11.60 16 17 C 0.14 1.80 4.96 -4.04 -0.02 1.78 16 18 C -0.15 -1.15 5.82 -27.88 -0.16 -1.31 16 19 C 0.52 4.82 7.64 -10.98 -0.08 4.73 16 20 O -0.51 -6.84 13.28 5.55 0.07 -6.76 16 21 N -0.67 -4.44 5.37 -9.76 -0.05 -4.49 16 22 C 0.10 0.87 6.43 -83.54 -0.54 0.34 16 23 C -0.09 -0.86 8.81 -39.10 -0.34 -1.20 16 24 C -0.15 -1.19 10.10 -39.47 -0.40 -1.59 16 25 C 0.07 0.59 11.18 -17.53 -0.20 0.39 16 26 N -0.47 -4.40 10.35 -13.09 -0.14 -4.53 16 27 C 0.07 0.56 11.10 -17.33 -0.19 0.37 16 28 C -0.08 -2.12 8.21 -38.44 -0.32 -2.44 16 29 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 30 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.09 1.60 8.06 -52.48 -0.42 1.17 16 32 H 0.09 1.40 6.38 -52.48 -0.33 1.07 16 33 H 0.40 4.80 6.49 -40.82 -0.26 4.54 16 34 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.42 1.19 8.80 -40.82 -0.36 0.83 16 39 H 0.15 1.69 6.01 -52.48 -0.32 1.37 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.14 4.19 5.72 -52.48 -0.30 3.89 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -34.37 371.88 -9.26 -43.63 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.92 Total: 10.25 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -5.14 Total: -11.70 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.06 Total: -41.50 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.16 Total: -20.28 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.37 -9.26 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066098132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.942 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds