Wall clock time and date at job start Tue Mar 31 2020 22:06:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30819 * 1
3 3 Si 1.86803 * 120.00089 * 2 1
4 4 H 1.48497 * 109.47489 * 240.00911 * 3 2 1
5 5 H 1.48510 * 109.46863 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.46935 * 120.00472 * 3 2 1
7 7 C 1.39934 * 120.00500 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00306 * 175.30053 * 7 2 1
9 9 C 1.41441 * 119.99770 * 355.30265 * 7 2 1
10 10 C 1.40786 * 120.17848 * 214.84696 * 9 7 2
11 11 C 1.37710 * 120.03922 * 180.02562 * 10 9 7
12 12 C 1.38362 * 120.41295 * 359.69425 * 11 10 9
13 13 C 1.39878 * 120.35940 * 0.55744 * 12 11 10
14 14 C 1.47888 * 120.02794 * 179.74047 * 13 12 11
15 15 O 1.21543 * 120.00216 * 179.72252 * 14 13 12
16 16 N 1.34779 * 119.99970 * 359.72877 * 14 13 12
17 17 C 1.46496 * 119.99944 * 179.97438 * 16 14 13
18 18 C 1.53002 * 109.46880 * 180.02562 * 17 16 14
19 19 C 1.50699 * 109.46913 * 180.02562 * 18 17 16
20 20 O 1.21287 * 120.00471 * 0.02562 * 19 18 17
21 21 N 1.34779 * 119.99977 * 179.97438 * 19 18 17
22 22 C 1.39956 * 120.00038 * 174.27560 * 21 19 18
23 23 C 1.39279 * 120.48844 * 333.93973 * 22 21 19
24 24 C 1.38501 * 118.36002 * 179.76102 * 23 22 21
25 25 C 1.38271 * 119.23821 * 0.54242 * 24 23 22
26 26 N 1.31861 * 120.91471 * 359.69724 * 25 24 23
27 27 C 1.31817 * 121.79553 * 0.02758 * 26 25 24
28 28 C 1.39030 * 119.94820 * 359.47129 * 13 12 11
29 29 H 0.97003 * 120.00349 * 359.97438 * 1 2 3
30 30 H 1.08003 * 119.97673 * 0.02562 * 10 9 7
31 31 H 1.08006 * 119.78802 * 179.97438 * 11 10 9
32 32 H 1.08005 * 119.82152 * 180.27760 * 12 11 10
33 33 H 0.97004 * 119.99873 * 359.97438 * 16 14 13
34 34 H 1.09002 * 109.47330 * 60.00141 * 17 16 14
35 35 H 1.08997 * 109.47231 * 299.99959 * 17 16 14
36 36 H 1.09002 * 109.46971 * 299.99439 * 18 17 16
37 37 H 1.08993 * 109.47320 * 59.99915 * 18 17 16
38 38 H 0.96999 * 119.99840 * 354.27130 * 21 19 18
39 39 H 1.08004 * 120.81508 * 0.02562 * 23 22 21
40 40 H 1.08003 * 120.38134 * 180.26224 * 24 23 22
41 41 H 1.07995 * 119.54256 * 179.72192 * 25 24 23
42 42 H 1.08006 * 119.66547 * 179.97438 * 27 26 25
43 43 H 1.08008 * 120.20441 * 180.23184 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 3.0958 1.6966 -1.2126
5 1 1.2771 2.7465 0.0006
6 1 3.0960 1.6963 1.2124
7 6 2.0080 -1.2118 -0.0005
8 1 3.0852 -1.2133 -0.0772
9 6 1.3044 -2.4347 0.0992
10 6 1.8652 -3.5187 0.8011
11 6 1.1779 -4.7082 0.8960
12 6 -0.0679 -4.8460 0.3100
13 6 -0.6388 -3.7819 -0.3958
14 6 -1.9683 -3.9391 -1.0242
15 8 -2.4661 -3.0124 -1.6331
16 7 -2.6280 -5.1099 -0.9215
17 6 -3.9452 -5.2654 -1.5434
18 6 -4.4704 -6.6779 -1.2789
19 6 -5.8252 -6.8382 -1.9192
20 8 -6.3216 -5.9138 -2.5277
21 7 -6.4848 -8.0090 -1.8166
22 6 -7.7911 -8.1215 -2.3063
23 6 -8.6111 -6.9993 -2.3964
24 6 -9.8943 -7.1603 -2.8921
25 6 -10.3200 -8.4211 -3.2676
26 7 -9.5205 -9.4646 -3.1651
27 6 -8.2906 -9.3545 -2.7038
28 6 0.0422 -2.5743 -0.5015
29 1 -0.4851 0.8400 0.0004
30 1 2.8351 -3.4171 1.2654
31 1 1.6122 -5.5373 1.4351
32 1 -0.6005 -5.7818 0.3942
33 1 -2.2305 -5.8495 -0.4357
34 1 -3.8609 -5.1041 -2.6181
35 1 -4.6355 -4.5362 -1.1195
36 1 -3.7802 -7.4075 -1.7025
37 1 -4.5548 -6.8389 -0.2042
38 1 -6.0542 -8.7737 -1.4034
39 1 -8.2536 -6.0269 -2.0913
40 1 -10.5563 -6.3115 -2.9800
41 1 -11.3212 -8.5529 -3.6505
42 1 -7.6652 -10.2323 -2.6341
43 1 -0.3964 -1.7487 -1.0423
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000066098132.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:06:24
Heat of formation + Delta-G solvation = -15.683539 kcal
Electronic energy + Delta-G solvation = -26738.169104 eV
Core-core repulsion = 22747.888149 eV
Total energy + Delta-G solvation = -3990.280955 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.27379 -39.71518 -39.11406 -37.08716 -35.62564 -34.89091 -33.67325 -32.56068
-31.61994 -30.40461 -29.51625 -29.37113 -25.49479 -24.93037 -24.14292 -23.20194
-21.95242 -20.97747 -20.80138 -19.67397 -18.41166 -17.71537 -17.54016 -17.23043
-16.50528 -16.14328 -15.92270 -15.42250 -14.98419 -14.77721 -14.66391 -14.60907
-14.18986 -14.14284 -13.67723 -13.49108 -13.22215 -13.12771 -12.62124 -12.55784
-12.52497 -12.07244 -11.81484 -11.58029 -11.43085 -11.15624 -11.06719 -10.75753
-10.61973 -10.47416 -10.06495 -10.02467 -9.76750 -9.71773 -9.29133 -9.04137
-8.75439 -8.69656 -7.67040 -7.42762 -6.64955 -4.46945 0.62762 0.91246
2.12365 2.15414 2.39022 2.81607 3.08943 3.10768 3.13978 3.46263
3.58384 3.83827 3.96241 4.09705 4.23264 4.43978 4.49653 4.65041
4.67954 4.72728 4.76395 4.93779 5.10910 5.19847 5.52112 5.58358
5.62135 5.77698 5.79305 5.83439 5.95983 6.06497 6.19448 6.36495
6.65728 6.75350 6.77427 6.94448 6.99510 7.24626 7.36225 7.53566
7.59924 7.64001 7.72090 7.89601 8.06886 8.19263 8.50967 8.82364
8.83861 8.91506 10.25683
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.025204 B = 0.001754 C = 0.001650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1110.689155 B =15962.234367 C =16965.683180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.802 5.802
2 C 0.068 3.932
3 Si 0.918 3.082
4 H -0.265 1.265
5 H -0.278 1.278
6 H -0.266 1.266
7 C -0.465 4.465
8 H 0.078 0.922
9 C 0.093 3.907
10 C -0.198 4.198
11 C -0.108 4.108
12 C -0.205 4.205
13 C -0.135 4.135
14 C 0.564 3.436
15 O -0.539 6.539
16 N -0.741 5.741
17 C 0.136 3.864
18 C -0.151 4.151
19 C 0.520 3.480
20 O -0.508 6.508
21 N -0.669 5.669
22 C 0.101 3.899
23 C -0.088 4.088
24 C -0.148 4.148
25 C 0.074 3.926
26 N -0.466 5.466
27 C 0.070 3.930
28 C -0.080 4.080
29 H 0.282 0.718
30 H 0.097 0.903
31 H 0.094 0.906
32 H 0.090 0.910
33 H 0.398 0.602
34 H 0.073 0.927
35 H 0.073 0.927
36 H 0.106 0.894
37 H 0.107 0.893
38 H 0.415 0.585
39 H 0.154 0.846
40 H 0.139 0.861
41 H 0.157 0.843
42 H 0.157 0.843
43 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.344 -17.252 -1.194 22.468
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.428 5.428
2 C -0.148 4.148
3 Si 0.742 3.258
4 H -0.190 1.190
5 H -0.203 1.203
6 H -0.191 1.191
7 C -0.495 4.495
8 H 0.097 0.903
9 C 0.091 3.909
10 C -0.218 4.218
11 C -0.126 4.126
12 C -0.225 4.225
13 C -0.139 4.139
14 C 0.355 3.645
15 O -0.416 6.416
16 N -0.396 5.396
17 C 0.012 3.988
18 C -0.192 4.192
19 C 0.307 3.693
20 O -0.382 6.382
21 N -0.315 5.315
22 C 0.004 3.996
23 C -0.116 4.116
24 C -0.168 4.168
25 C -0.084 4.084
26 N -0.174 5.174
27 C -0.090 4.090
28 C -0.101 4.101
29 H 0.094 0.906
30 H 0.115 0.885
31 H 0.112 0.888
32 H 0.108 0.892
33 H 0.233 0.767
34 H 0.092 0.908
35 H 0.091 0.909
36 H 0.125 0.875
37 H 0.126 0.874
38 H 0.252 0.748
39 H 0.172 0.828
40 H 0.157 0.843
41 H 0.174 0.826
42 H 0.174 0.826
43 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -15.520 -16.498 -2.311 22.768
hybrid contribution 1.026 0.694 0.869 1.513
sum -14.494 -15.804 -1.443 21.492
Atomic orbital electron populations
1.69709 1.07236 1.29380 1.36503 1.25927 0.94976 1.01354 0.92554
0.86213 0.79757 0.80037 0.79747 1.18967 1.20325 1.19075 1.19492
0.94781 0.89940 1.45299 0.90338 1.17666 0.91953 0.92354 0.88947
1.21272 1.01072 0.95025 1.04398 1.20456 0.95035 0.96822 1.00280
1.20406 0.97722 0.97043 1.07316 1.19551 0.93706 0.96847 1.03766
1.18826 0.85549 0.81107 0.79063 1.90728 1.68850 1.39734 1.42257
1.45907 1.19449 1.16053 1.58188 1.20883 0.84875 0.93601 0.99478
1.21854 0.93587 1.00681 1.03040 1.20777 0.87232 0.81684 0.79559
1.90753 1.68317 1.39524 1.39564 1.43524 1.12967 1.14984 1.60015
1.18890 0.85408 0.96014 0.99256 1.21865 0.92586 0.99723 0.97441
1.22141 0.96246 0.99119 0.99332 1.22730 0.99576 0.88203 0.97886
1.67633 1.03854 1.33463 1.12442 1.22528 0.93325 0.95603 0.97580
1.21970 0.95451 0.94773 0.97869 0.90626 0.88453 0.88787 0.89168
0.76685 0.90846 0.90864 0.87544 0.87448 0.74812 0.82801 0.84299
0.82562 0.82581 0.83756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -21.46 10.60 55.55 0.59 -20.87 16
2 C 0.07 1.74 5.42 -17.35 -0.09 1.64 16
3 Si 0.92 19.01 29.56 -169.99 -5.03 13.99 16
4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16
5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16
6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16
7 C -0.46 -12.18 9.04 -37.73 -0.34 -12.52 16
8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16
9 C 0.09 2.43 5.55 -106.87 -0.59 1.84 16
10 C -0.20 -4.57 9.78 -38.81 -0.38 -4.95 16
11 C -0.11 -2.19 10.01 -39.73 -0.40 -2.59 16
12 C -0.20 -4.06 9.55 -38.92 -0.37 -4.44 16
13 C -0.14 -3.11 5.87 -105.04 -0.62 -3.72 16
14 C 0.56 12.05 7.77 -12.31 -0.10 11.95 16
15 O -0.54 -13.60 16.33 5.33 0.09 -13.51 16
16 N -0.74 -11.26 5.51 -61.24 -0.34 -11.60 16
17 C 0.14 1.80 4.96 -4.04 -0.02 1.78 16
18 C -0.15 -1.15 5.82 -27.88 -0.16 -1.31 16
19 C 0.52 4.82 7.64 -10.98 -0.08 4.73 16
20 O -0.51 -6.84 13.28 5.55 0.07 -6.76 16
21 N -0.67 -4.44 5.37 -9.76 -0.05 -4.49 16
22 C 0.10 0.87 6.43 -83.54 -0.54 0.34 16
23 C -0.09 -0.86 8.81 -39.10 -0.34 -1.20 16
24 C -0.15 -1.19 10.10 -39.47 -0.40 -1.59 16
25 C 0.07 0.59 11.18 -17.53 -0.20 0.39 16
26 N -0.47 -4.40 10.35 -13.09 -0.14 -4.53 16
27 C 0.07 0.56 11.10 -17.33 -0.19 0.37 16
28 C -0.08 -2.12 8.21 -38.44 -0.32 -2.44 16
29 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16
30 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16
31 H 0.09 1.60 8.06 -52.48 -0.42 1.17 16
32 H 0.09 1.40 6.38 -52.48 -0.33 1.07 16
33 H 0.40 4.80 6.49 -40.82 -0.26 4.54 16
34 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16
35 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16
36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.42 1.19 8.80 -40.82 -0.36 0.83 16
39 H 0.15 1.69 6.01 -52.48 -0.32 1.37 16
40 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16
41 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16
42 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16
43 H 0.14 4.19 5.72 -52.48 -0.30 3.89 16
LS Contribution 371.88 15.07 5.60 5.60
Total: -1.00 -34.37 371.88 -9.26 -43.63
By element:
Atomic # 1 Polarization: 15.17 SS G_CDS: -4.92 Total: 10.25 kcal
Atomic # 6 Polarization: -6.56 SS G_CDS: -5.14 Total: -11.70 kcal
Atomic # 7 Polarization: -41.56 SS G_CDS: 0.06 Total: -41.50 kcal
Atomic # 8 Polarization: -20.44 SS G_CDS: 0.16 Total: -20.28 kcal
Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -34.37 -9.26 -43.63 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000066098132.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.942 kcal
(2) G-P(sol) polarization free energy of solvation -34.368 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.684 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds