Wall clock time and date at job start Tue Mar 31 2020 22:06:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30819 * 1
3 3 Si 1.86803 * 120.00089 * 2 1
4 4 H 1.48497 * 109.47489 * 240.00911 * 3 2 1
5 5 H 1.48510 * 109.46863 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.46935 * 120.00472 * 3 2 1
7 7 C 1.39934 * 120.00500 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00306 * 175.30053 * 7 2 1
9 9 C 1.41441 * 119.99770 * 355.30265 * 7 2 1
10 10 C 1.40786 * 120.17848 * 214.84696 * 9 7 2
11 11 C 1.37710 * 120.03922 * 180.02562 * 10 9 7
12 12 C 1.38362 * 120.41295 * 359.69425 * 11 10 9
13 13 C 1.39878 * 120.35940 * 0.55744 * 12 11 10
14 14 C 1.47888 * 120.02794 * 179.74047 * 13 12 11
15 15 O 1.21543 * 120.00216 * 179.72252 * 14 13 12
16 16 N 1.34779 * 119.99970 * 359.72877 * 14 13 12
17 17 C 1.46496 * 119.99944 * 179.97438 * 16 14 13
18 18 C 1.53002 * 109.46880 * 180.02562 * 17 16 14
19 19 C 1.50699 * 109.46913 * 180.02562 * 18 17 16
20 20 O 1.21287 * 120.00471 * 0.02562 * 19 18 17
21 21 N 1.34779 * 119.99977 * 179.97438 * 19 18 17
22 22 C 1.39956 * 120.00038 * 174.27560 * 21 19 18
23 23 C 1.39279 * 120.48844 * 333.93973 * 22 21 19
24 24 C 1.38501 * 118.36002 * 179.76102 * 23 22 21
25 25 C 1.38271 * 119.23821 * 0.54242 * 24 23 22
26 26 N 1.31861 * 120.91471 * 359.69724 * 25 24 23
27 27 C 1.31817 * 121.79553 * 0.02758 * 26 25 24
28 28 C 1.39030 * 119.94820 * 359.47129 * 13 12 11
29 29 H 0.97003 * 120.00349 * 359.97438 * 1 2 3
30 30 H 1.08003 * 119.97673 * 0.02562 * 10 9 7
31 31 H 1.08006 * 119.78802 * 179.97438 * 11 10 9
32 32 H 1.08005 * 119.82152 * 180.27760 * 12 11 10
33 33 H 0.97004 * 119.99873 * 359.97438 * 16 14 13
34 34 H 1.09002 * 109.47330 * 60.00141 * 17 16 14
35 35 H 1.08997 * 109.47231 * 299.99959 * 17 16 14
36 36 H 1.09002 * 109.46971 * 299.99439 * 18 17 16
37 37 H 1.08993 * 109.47320 * 59.99915 * 18 17 16
38 38 H 0.96999 * 119.99840 * 354.27130 * 21 19 18
39 39 H 1.08004 * 120.81508 * 0.02562 * 23 22 21
40 40 H 1.08003 * 120.38134 * 180.26224 * 24 23 22
41 41 H 1.07995 * 119.54256 * 179.72192 * 25 24 23
42 42 H 1.08006 * 119.66547 * 179.97438 * 27 26 25
43 43 H 1.08008 * 120.20441 * 180.23184 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 3.0958 1.6966 -1.2126
5 1 1.2771 2.7465 0.0006
6 1 3.0960 1.6963 1.2124
7 6 2.0080 -1.2118 -0.0005
8 1 3.0852 -1.2133 -0.0772
9 6 1.3044 -2.4347 0.0992
10 6 1.8652 -3.5187 0.8011
11 6 1.1779 -4.7082 0.8960
12 6 -0.0679 -4.8460 0.3100
13 6 -0.6388 -3.7819 -0.3958
14 6 -1.9683 -3.9391 -1.0242
15 8 -2.4661 -3.0124 -1.6331
16 7 -2.6280 -5.1099 -0.9215
17 6 -3.9452 -5.2654 -1.5434
18 6 -4.4704 -6.6779 -1.2789
19 6 -5.8252 -6.8382 -1.9192
20 8 -6.3216 -5.9138 -2.5277
21 7 -6.4848 -8.0090 -1.8166
22 6 -7.7911 -8.1215 -2.3063
23 6 -8.6111 -6.9993 -2.3964
24 6 -9.8943 -7.1603 -2.8921
25 6 -10.3200 -8.4211 -3.2676
26 7 -9.5205 -9.4646 -3.1651
27 6 -8.2906 -9.3545 -2.7038
28 6 0.0422 -2.5743 -0.5015
29 1 -0.4851 0.8400 0.0004
30 1 2.8351 -3.4171 1.2654
31 1 1.6122 -5.5373 1.4351
32 1 -0.6005 -5.7818 0.3942
33 1 -2.2305 -5.8495 -0.4357
34 1 -3.8609 -5.1041 -2.6181
35 1 -4.6355 -4.5362 -1.1195
36 1 -3.7802 -7.4075 -1.7025
37 1 -4.5548 -6.8389 -0.2042
38 1 -6.0542 -8.7737 -1.4034
39 1 -8.2536 -6.0269 -2.0913
40 1 -10.5563 -6.3115 -2.9800
41 1 -11.3212 -8.5529 -3.6505
42 1 -7.6652 -10.2323 -2.6341
43 1 -0.3964 -1.7487 -1.0423
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000066098132.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:06:23
Heat of formation + Delta-G solvation = -40.459329 kcal
Electronic energy + Delta-G solvation = -26739.243463 eV
Core-core repulsion = 22747.888149 eV
Total energy + Delta-G solvation = -3991.355314 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 339.137 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.95018 -40.92732 -40.25021 -38.82507 -36.47671 -36.11531 -35.49262 -33.27196
-32.75578 -31.68478 -31.24554 -30.45310 -27.24696 -26.05811 -24.85493 -24.16849
-23.29516 -22.66616 -21.70978 -21.15818 -19.59321 -18.93491 -18.32446 -17.92176
-17.75376 -17.28063 -17.06800 -16.74757 -16.45427 -16.33013 -15.91055 -15.41804
-15.28589 -15.00601 -14.95540 -14.74118 -14.52675 -14.31382 -14.26208 -13.98962
-13.54354 -13.13601 -13.00426 -12.85036 -12.77498 -12.58307 -12.46029 -12.17853
-12.12433 -11.89928 -11.52975 -11.38667 -11.12025 -10.81194 -10.71128 -10.36729
-10.19477 -9.43749 -9.32232 -9.25347 -8.50456 -6.42839 0.00927 0.25247
0.37522 1.04891 1.36931 1.45102 1.47530 1.50378 1.68218 2.10958
2.22668 2.37198 2.84671 2.84846 3.44966 3.59578 3.66573 3.77056
3.86203 4.01730 4.03829 4.07140 4.12083 4.35209 4.44729 4.49583
4.61134 4.66485 4.79406 4.84917 4.96450 5.01321 5.12095 5.17707
5.20192 5.20968 5.36830 5.40385 5.55442 5.75420 5.88295 5.91534
6.12034 6.26214 6.32246 6.54005 6.71340 6.92806 6.93374 6.98001
6.98865 7.32965 8.41002
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.025204 B = 0.001754 C = 0.001650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1110.689155 B =15962.234367 C =16965.683180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.846 5.846
2 C 0.021 3.979
3 Si 0.989 3.011
4 H -0.259 1.259
5 H -0.276 1.276
6 H -0.255 1.255
7 C -0.502 4.502
8 H 0.081 0.919
9 C 0.057 3.943
10 C -0.200 4.200
11 C -0.105 4.105
12 C -0.176 4.176
13 C -0.148 4.148
14 C 0.559 3.441
15 O -0.591 6.591
16 N -0.709 5.709
17 C 0.135 3.865
18 C -0.133 4.133
19 C 0.518 3.482
20 O -0.560 6.560
21 N -0.649 5.649
22 C 0.091 3.909
23 C -0.112 4.112
24 C -0.152 4.152
25 C 0.069 3.931
26 N -0.488 5.488
27 C 0.072 3.928
28 C -0.121 4.121
29 H 0.281 0.719
30 H 0.111 0.889
31 H 0.145 0.855
32 H 0.148 0.852
33 H 0.419 0.581
34 H 0.050 0.950
35 H 0.048 0.952
36 H 0.146 0.854
37 H 0.144 0.856
38 H 0.436 0.564
39 H 0.135 0.865
40 H 0.156 0.844
41 H 0.181 0.819
42 H 0.187 0.813
43 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.948 -21.416 0.247 25.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.474 5.474
2 C -0.191 4.191
3 Si 0.810 3.190
4 H -0.183 1.183
5 H -0.201 1.201
6 H -0.179 1.179
7 C -0.533 4.533
8 H 0.099 0.901
9 C 0.055 3.945
10 C -0.219 4.219
11 C -0.123 4.123
12 C -0.195 4.195
13 C -0.151 4.151
14 C 0.348 3.652
15 O -0.473 6.473
16 N -0.363 5.363
17 C 0.011 3.989
18 C -0.173 4.173
19 C 0.307 3.693
20 O -0.437 6.437
21 N -0.296 5.296
22 C -0.006 4.006
23 C -0.140 4.140
24 C -0.172 4.172
25 C -0.088 4.088
26 N -0.197 5.197
27 C -0.088 4.088
28 C -0.142 4.142
29 H 0.091 0.909
30 H 0.129 0.871
31 H 0.162 0.838
32 H 0.166 0.834
33 H 0.258 0.742
34 H 0.068 0.932
35 H 0.067 0.933
36 H 0.163 0.837
37 H 0.161 0.839
38 H 0.277 0.723
39 H 0.153 0.847
40 H 0.174 0.826
41 H 0.198 0.802
42 H 0.204 0.796
43 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -15.113 -20.786 -0.829 25.713
hybrid contribution 0.809 1.722 0.429 1.950
sum -14.304 -19.064 -0.400 23.837
Atomic orbital electron populations
1.69880 1.08909 1.29873 1.38730 1.26851 0.95643 1.04846 0.91750
0.85149 0.78352 0.75406 0.80139 1.18341 1.20085 1.17902 1.19787
0.95057 0.91059 1.47409 0.90066 1.18002 0.92464 0.93699 0.90322
1.21588 1.01703 0.95241 1.03415 1.20995 0.94751 0.96999 0.99508
1.21007 0.97349 0.97705 1.03481 1.19836 0.94388 0.96721 1.04144
1.18789 0.85453 0.82215 0.78699 1.90707 1.69904 1.42042 1.44623
1.45553 1.19506 1.14446 1.56804 1.20896 0.83228 0.97112 0.97708
1.21766 0.92898 0.97251 1.05379 1.21078 0.87686 0.81607 0.78889
1.90759 1.69564 1.41398 1.41990 1.43293 1.12151 1.14959 1.59162
1.18987 0.85977 0.95964 0.99674 1.21912 0.93821 0.99536 0.98704
1.22356 0.95983 0.99998 0.98848 1.23146 1.00500 0.87808 0.97305
1.67690 1.04655 1.34107 1.13203 1.22966 0.93200 0.96193 0.96423
1.21728 0.96858 0.95611 1.00027 0.90872 0.87138 0.83759 0.83418
0.74184 0.93155 0.93331 0.83669 0.83854 0.72315 0.84741 0.82646
0.80185 0.79631 0.87856
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -48.63 10.60 21.82 0.23 -48.40 16
2 C 0.02 1.10 5.42 85.25 0.46 1.56 16
3 Si 0.99 40.67 29.56 68.60 2.03 42.70 16
4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16
5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16
6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16
7 C -0.50 -27.59 9.04 23.47 0.21 -27.38 16
8 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16
9 C 0.06 3.08 5.55 -21.32 -0.12 2.96 16
10 C -0.20 -8.97 9.78 22.77 0.22 -8.75 16
11 C -0.10 -3.81 10.01 22.17 0.22 -3.59 16
12 C -0.18 -6.25 9.55 22.70 0.22 -6.04 16
13 C -0.15 -6.74 5.87 -20.14 -0.12 -6.86 16
14 C 0.56 24.03 7.77 86.80 0.67 24.71 16
15 O -0.59 -31.66 16.33 -3.85 -0.06 -31.72 16
16 N -0.71 -19.89 5.51 -465.94 -2.57 -22.46 16
17 C 0.13 3.43 4.96 86.38 0.43 3.85 16
18 C -0.13 -1.52 5.82 29.85 0.17 -1.34 16
19 C 0.52 8.70 7.64 87.66 0.67 9.37 16
20 O -0.56 -15.39 13.28 -3.05 -0.04 -15.43 16
21 N -0.65 -6.90 5.37 -303.19 -1.63 -8.53 16
22 C 0.09 1.44 6.43 38.24 0.25 1.68 16
23 C -0.11 -2.17 8.81 22.58 0.20 -1.97 16
24 C -0.15 -2.37 10.10 22.34 0.23 -2.14 16
25 C 0.07 1.02 11.18 84.70 0.95 1.97 16
26 N -0.49 -8.38 10.35 -195.33 -2.02 -10.40 16
27 C 0.07 1.00 11.10 84.84 0.94 1.94 16
28 C -0.12 -6.75 8.21 23.01 0.19 -6.56 16
29 H 0.28 15.06 8.30 -92.71 -0.77 14.30 16
30 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16
31 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16
32 H 0.15 3.51 6.38 -2.91 -0.02 3.49 16
33 H 0.42 7.92 6.49 -92.71 -0.60 7.32 16
34 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16
35 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16
36 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16
37 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16
38 H 0.44 0.67 8.80 -92.71 -0.82 -0.14 16
39 H 0.13 3.15 6.01 -2.91 -0.02 3.13 16
40 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16
41 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16
42 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16
43 H 0.10 6.55 5.72 -2.91 -0.02 6.54 16
Total: -1.00 -85.36 371.88 1.40 -83.96
By element:
Atomic # 1 Polarization: 27.22 SS G_CDS: -0.34 Total: 26.88 kcal
Atomic # 6 Polarization: -22.39 SS G_CDS: 5.79 Total: -16.59 kcal
Atomic # 7 Polarization: -83.81 SS G_CDS: -5.99 Total: -89.79 kcal
Atomic # 8 Polarization: -47.05 SS G_CDS: -0.10 Total: -47.16 kcal
Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal
Total: -85.36 1.40 -83.96 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000066098132.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.500 kcal
(2) G-P(sol) polarization free energy of solvation -85.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.857 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.459 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds