Wall clock time and date at job start Tue Mar 31 2020 22:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48497 * 109.47489 * 240.00911 * 3 2 1 5 5 H 1.48510 * 109.46863 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46935 * 120.00472 * 3 2 1 7 7 C 1.39934 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00306 * 175.30053 * 7 2 1 9 9 C 1.41441 * 119.99770 * 355.30265 * 7 2 1 10 10 C 1.40786 * 120.17848 * 214.84696 * 9 7 2 11 11 C 1.37710 * 120.03922 * 180.02562 * 10 9 7 12 12 C 1.38362 * 120.41295 * 359.69425 * 11 10 9 13 13 C 1.39878 * 120.35940 * 0.55744 * 12 11 10 14 14 C 1.47888 * 120.02794 * 179.74047 * 13 12 11 15 15 O 1.21543 * 120.00216 * 179.72252 * 14 13 12 16 16 N 1.34779 * 119.99970 * 359.72877 * 14 13 12 17 17 C 1.46496 * 119.99944 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.46880 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46913 * 180.02562 * 18 17 16 20 20 O 1.21287 * 120.00471 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99977 * 179.97438 * 19 18 17 22 22 C 1.39956 * 120.00038 * 174.27560 * 21 19 18 23 23 C 1.39279 * 120.48844 * 333.93973 * 22 21 19 24 24 C 1.38501 * 118.36002 * 179.76102 * 23 22 21 25 25 C 1.38271 * 119.23821 * 0.54242 * 24 23 22 26 26 N 1.31861 * 120.91471 * 359.69724 * 25 24 23 27 27 C 1.31817 * 121.79553 * 0.02758 * 26 25 24 28 28 C 1.39030 * 119.94820 * 359.47129 * 13 12 11 29 29 H 0.97003 * 120.00349 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.97673 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.78802 * 179.97438 * 11 10 9 32 32 H 1.08005 * 119.82152 * 180.27760 * 12 11 10 33 33 H 0.97004 * 119.99873 * 359.97438 * 16 14 13 34 34 H 1.09002 * 109.47330 * 60.00141 * 17 16 14 35 35 H 1.08997 * 109.47231 * 299.99959 * 17 16 14 36 36 H 1.09002 * 109.46971 * 299.99439 * 18 17 16 37 37 H 1.08993 * 109.47320 * 59.99915 * 18 17 16 38 38 H 0.96999 * 119.99840 * 354.27130 * 21 19 18 39 39 H 1.08004 * 120.81508 * 0.02562 * 23 22 21 40 40 H 1.08003 * 120.38134 * 180.26224 * 24 23 22 41 41 H 1.07995 * 119.54256 * 179.72192 * 25 24 23 42 42 H 1.08006 * 119.66547 * 179.97438 * 27 26 25 43 43 H 1.08008 * 120.20441 * 180.23184 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0958 1.6966 -1.2126 5 1 1.2771 2.7465 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0852 -1.2133 -0.0772 9 6 1.3044 -2.4347 0.0992 10 6 1.8652 -3.5187 0.8011 11 6 1.1779 -4.7082 0.8960 12 6 -0.0679 -4.8460 0.3100 13 6 -0.6388 -3.7819 -0.3958 14 6 -1.9683 -3.9391 -1.0242 15 8 -2.4661 -3.0124 -1.6331 16 7 -2.6280 -5.1099 -0.9215 17 6 -3.9452 -5.2654 -1.5434 18 6 -4.4704 -6.6779 -1.2789 19 6 -5.8252 -6.8382 -1.9192 20 8 -6.3216 -5.9138 -2.5277 21 7 -6.4848 -8.0090 -1.8166 22 6 -7.7911 -8.1215 -2.3063 23 6 -8.6111 -6.9993 -2.3964 24 6 -9.8943 -7.1603 -2.8921 25 6 -10.3200 -8.4211 -3.2676 26 7 -9.5205 -9.4646 -3.1651 27 6 -8.2906 -9.3545 -2.7038 28 6 0.0422 -2.5743 -0.5015 29 1 -0.4851 0.8400 0.0004 30 1 2.8351 -3.4171 1.2654 31 1 1.6122 -5.5373 1.4351 32 1 -0.6005 -5.7818 0.3942 33 1 -2.2305 -5.8495 -0.4357 34 1 -3.8609 -5.1041 -2.6181 35 1 -4.6355 -4.5362 -1.1195 36 1 -3.7802 -7.4075 -1.7025 37 1 -4.5548 -6.8389 -0.2042 38 1 -6.0542 -8.7737 -1.4034 39 1 -8.2536 -6.0269 -2.0913 40 1 -10.5563 -6.3115 -2.9800 41 1 -11.3212 -8.5529 -3.6505 42 1 -7.6652 -10.2323 -2.6341 43 1 -0.3964 -1.7487 -1.0423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066098132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:23 Heat of formation + Delta-G solvation = -40.459329 kcal Electronic energy + Delta-G solvation = -26739.243463 eV Core-core repulsion = 22747.888149 eV Total energy + Delta-G solvation = -3991.355314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.95018 -40.92732 -40.25021 -38.82507 -36.47671 -36.11531 -35.49262 -33.27196 -32.75578 -31.68478 -31.24554 -30.45310 -27.24696 -26.05811 -24.85493 -24.16849 -23.29516 -22.66616 -21.70978 -21.15818 -19.59321 -18.93491 -18.32446 -17.92176 -17.75376 -17.28063 -17.06800 -16.74757 -16.45427 -16.33013 -15.91055 -15.41804 -15.28589 -15.00601 -14.95540 -14.74118 -14.52675 -14.31382 -14.26208 -13.98962 -13.54354 -13.13601 -13.00426 -12.85036 -12.77498 -12.58307 -12.46029 -12.17853 -12.12433 -11.89928 -11.52975 -11.38667 -11.12025 -10.81194 -10.71128 -10.36729 -10.19477 -9.43749 -9.32232 -9.25347 -8.50456 -6.42839 0.00927 0.25247 0.37522 1.04891 1.36931 1.45102 1.47530 1.50378 1.68218 2.10958 2.22668 2.37198 2.84671 2.84846 3.44966 3.59578 3.66573 3.77056 3.86203 4.01730 4.03829 4.07140 4.12083 4.35209 4.44729 4.49583 4.61134 4.66485 4.79406 4.84917 4.96450 5.01321 5.12095 5.17707 5.20192 5.20968 5.36830 5.40385 5.55442 5.75420 5.88295 5.91534 6.12034 6.26214 6.32246 6.54005 6.71340 6.92806 6.93374 6.98001 6.98865 7.32965 8.41002 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025204 B = 0.001754 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.689155 B =15962.234367 C =16965.683180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.021 3.979 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.502 4.502 8 H 0.081 0.919 9 C 0.057 3.943 10 C -0.200 4.200 11 C -0.105 4.105 12 C -0.176 4.176 13 C -0.148 4.148 14 C 0.559 3.441 15 O -0.591 6.591 16 N -0.709 5.709 17 C 0.135 3.865 18 C -0.133 4.133 19 C 0.518 3.482 20 O -0.560 6.560 21 N -0.649 5.649 22 C 0.091 3.909 23 C -0.112 4.112 24 C -0.152 4.152 25 C 0.069 3.931 26 N -0.488 5.488 27 C 0.072 3.928 28 C -0.121 4.121 29 H 0.281 0.719 30 H 0.111 0.889 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.419 0.581 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.436 0.564 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.187 0.813 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.948 -21.416 0.247 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.191 4.191 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.533 4.533 8 H 0.099 0.901 9 C 0.055 3.945 10 C -0.219 4.219 11 C -0.123 4.123 12 C -0.195 4.195 13 C -0.151 4.151 14 C 0.348 3.652 15 O -0.473 6.473 16 N -0.363 5.363 17 C 0.011 3.989 18 C -0.173 4.173 19 C 0.307 3.693 20 O -0.437 6.437 21 N -0.296 5.296 22 C -0.006 4.006 23 C -0.140 4.140 24 C -0.172 4.172 25 C -0.088 4.088 26 N -0.197 5.197 27 C -0.088 4.088 28 C -0.142 4.142 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.277 0.723 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.198 0.802 42 H 0.204 0.796 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.113 -20.786 -0.829 25.713 hybrid contribution 0.809 1.722 0.429 1.950 sum -14.304 -19.064 -0.400 23.837 Atomic orbital electron populations 1.69880 1.08909 1.29873 1.38730 1.26851 0.95643 1.04846 0.91750 0.85149 0.78352 0.75406 0.80139 1.18341 1.20085 1.17902 1.19787 0.95057 0.91059 1.47409 0.90066 1.18002 0.92464 0.93699 0.90322 1.21588 1.01703 0.95241 1.03415 1.20995 0.94751 0.96999 0.99508 1.21007 0.97349 0.97705 1.03481 1.19836 0.94388 0.96721 1.04144 1.18789 0.85453 0.82215 0.78699 1.90707 1.69904 1.42042 1.44623 1.45553 1.19506 1.14446 1.56804 1.20896 0.83228 0.97112 0.97708 1.21766 0.92898 0.97251 1.05379 1.21078 0.87686 0.81607 0.78889 1.90759 1.69564 1.41398 1.41990 1.43293 1.12151 1.14959 1.59162 1.18987 0.85977 0.95964 0.99674 1.21912 0.93821 0.99536 0.98704 1.22356 0.95983 0.99998 0.98848 1.23146 1.00500 0.87808 0.97305 1.67690 1.04655 1.34107 1.13203 1.22966 0.93200 0.96193 0.96423 1.21728 0.96858 0.95611 1.00027 0.90872 0.87138 0.83759 0.83418 0.74184 0.93155 0.93331 0.83669 0.83854 0.72315 0.84741 0.82646 0.80185 0.79631 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.63 10.60 21.82 0.23 -48.40 16 2 C 0.02 1.10 5.42 85.25 0.46 1.56 16 3 Si 0.99 40.67 29.56 68.60 2.03 42.70 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.59 9.04 23.47 0.21 -27.38 16 8 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 9 C 0.06 3.08 5.55 -21.32 -0.12 2.96 16 10 C -0.20 -8.97 9.78 22.77 0.22 -8.75 16 11 C -0.10 -3.81 10.01 22.17 0.22 -3.59 16 12 C -0.18 -6.25 9.55 22.70 0.22 -6.04 16 13 C -0.15 -6.74 5.87 -20.14 -0.12 -6.86 16 14 C 0.56 24.03 7.77 86.80 0.67 24.71 16 15 O -0.59 -31.66 16.33 -3.85 -0.06 -31.72 16 16 N -0.71 -19.89 5.51 -465.94 -2.57 -22.46 16 17 C 0.13 3.43 4.96 86.38 0.43 3.85 16 18 C -0.13 -1.52 5.82 29.85 0.17 -1.34 16 19 C 0.52 8.70 7.64 87.66 0.67 9.37 16 20 O -0.56 -15.39 13.28 -3.05 -0.04 -15.43 16 21 N -0.65 -6.90 5.37 -303.19 -1.63 -8.53 16 22 C 0.09 1.44 6.43 38.24 0.25 1.68 16 23 C -0.11 -2.17 8.81 22.58 0.20 -1.97 16 24 C -0.15 -2.37 10.10 22.34 0.23 -2.14 16 25 C 0.07 1.02 11.18 84.70 0.95 1.97 16 26 N -0.49 -8.38 10.35 -195.33 -2.02 -10.40 16 27 C 0.07 1.00 11.10 84.84 0.94 1.94 16 28 C -0.12 -6.75 8.21 23.01 0.19 -6.56 16 29 H 0.28 15.06 8.30 -92.71 -0.77 14.30 16 30 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 32 H 0.15 3.51 6.38 -2.91 -0.02 3.49 16 33 H 0.42 7.92 6.49 -92.71 -0.60 7.32 16 34 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.44 0.67 8.80 -92.71 -0.82 -0.14 16 39 H 0.13 3.15 6.01 -2.91 -0.02 3.13 16 40 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.10 6.55 5.72 -2.91 -0.02 6.54 16 Total: -1.00 -85.36 371.88 1.40 -83.96 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.34 Total: 26.88 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 5.79 Total: -16.59 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -5.99 Total: -89.79 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -0.10 Total: -47.16 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -85.36 1.40 -83.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066098132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.500 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds