Wall clock time and date at job start Tue Mar 31 2020 22:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33613 * 1 3 3 C 1.47608 * 126.11521 * 2 1 4 4 C 1.38932 * 133.93822 * 0.02562 * 3 2 1 5 5 C 1.38102 * 119.75355 * 179.97438 * 4 3 2 6 6 C 1.38604 * 120.49180 * 359.97438 * 5 4 3 7 7 C 1.37990 * 120.56031 * 359.97438 * 6 5 4 8 8 C 1.39290 * 119.76694 * 0.27661 * 7 6 5 9 9 C 1.47129 * 133.63391 * 179.74663 * 8 7 6 10 10 O 1.21641 * 125.44208 * 0.03288 * 9 8 7 11 11 N 1.34502 * 109.11364 * 179.97438 * 9 8 7 12 12 C 1.46504 * 124.94294 * 179.97438 * 11 9 8 13 13 C 1.50691 * 109.46983 * 89.97649 * 12 11 9 14 14 O 1.21282 * 120.00509 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99829 * 180.02562 * 13 12 11 16 16 C 1.46510 * 119.99995 * 179.97438 * 15 13 12 17 17 C 1.50691 * 109.47020 * 89.99632 * 16 15 13 18 18 H 1.08001 * 120.00707 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99809 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00030 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47148 * 60.00267 * 21 19 17 23 23 H 1.48499 * 109.46914 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47212 * 299.99954 * 21 19 17 25 25 C 1.46495 * 120.00038 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.47438 * 89.99913 * 25 15 13 27 27 C 1.47197 * 109.47179 * 179.97438 * 26 25 15 28 28 N 7.74677 * 91.14195 * 193.88637 * 2 1 3 29 29 H 1.07993 * 120.00190 * 0.02975 * 1 2 3 30 30 H 1.08001 * 119.99970 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.12253 * 359.96709 * 4 3 2 32 32 H 1.08002 * 119.75598 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.71710 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.11108 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.46991 * 209.97678 * 12 11 9 36 36 H 1.08996 * 109.46646 * 329.97370 * 12 11 9 37 37 H 1.09001 * 109.46546 * 210.00051 * 16 15 13 38 38 H 1.09001 * 109.46533 * 329.99375 * 16 15 13 39 39 H 0.96998 * 120.00038 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47075 * 210.00339 * 25 15 13 41 41 H 1.09002 * 109.47166 * 329.99644 * 25 15 13 42 42 H 1.09001 * 109.47335 * 300.00266 * 26 25 15 43 43 H 1.09001 * 109.46763 * 60.00391 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1924 0.0000 4 6 1.9662 2.5609 0.0004 5 6 3.0287 3.4430 0.0008 6 6 4.3328 2.9733 0.0013 7 6 4.5902 1.6177 0.0019 8 6 3.5313 0.7127 -0.0037 9 6 3.4514 -0.7564 -0.0095 10 8 4.4026 -1.5146 -0.0099 11 7 2.1585 -1.1271 -0.0131 12 6 1.6829 -2.5128 -0.0198 13 6 1.5183 -2.9942 1.3987 14 8 1.7735 -2.2530 2.3241 15 7 1.0883 -4.2488 1.6389 16 6 0.9287 -4.7170 3.0180 17 6 -0.4699 -4.4167 3.4917 18 1 -1.1702 -3.9265 2.8316 19 6 -0.8560 -4.7686 4.7677 20 7 -0.0034 -5.3660 5.5715 21 14 -2.5900 -4.3970 5.3548 22 1 -3.5683 -5.0913 4.4796 23 1 -2.7516 -4.8715 6.7526 24 1 -2.8282 -2.9322 5.2991 25 6 0.7805 -5.1442 0.5211 26 6 2.0378 -5.9238 0.1310 27 6 1.7284 -6.8240 -0.9918 28 7 1.4905 -7.5189 -1.8588 29 1 -0.5400 0.9352 -0.0005 30 1 -0.5400 -0.9353 0.0004 31 1 0.9524 2.9334 0.0004 32 1 2.8422 4.5068 0.0008 33 1 5.1543 3.6744 0.0020 34 1 5.6092 1.2596 0.0019 35 1 0.7238 -2.5653 -0.5349 36 1 2.4073 -3.1430 -0.5356 37 1 1.1034 -5.7921 3.0591 38 1 1.6472 -4.2074 3.6600 39 1 -0.2750 -5.6133 6.4693 40 1 -0.0018 -5.8422 0.8195 41 1 0.4379 -4.5572 -0.3310 42 1 2.8202 -5.2259 -0.1674 43 1 2.3803 -6.5109 0.9831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067231167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:42 Heat of formation + Delta-G solvation = 32.335073 kcal Electronic energy + Delta-G solvation = -28589.974031 eV Core-core repulsion = 24601.775319 eV Total energy + Delta-G solvation = -3988.198712 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.64612 -39.34665 -38.15174 -36.94443 -36.64506 -35.28169 -33.03170 -32.25603 -31.75071 -30.89566 -30.13596 -28.72215 -26.78202 -24.11605 -23.79337 -23.55611 -22.37408 -21.52137 -19.63398 -18.60297 -17.74080 -17.35620 -17.01494 -16.64835 -16.48496 -16.22223 -15.51237 -15.08836 -14.92539 -14.72989 -14.57097 -14.38221 -14.15640 -13.94838 -13.80752 -13.64486 -13.10947 -12.85470 -12.59119 -12.53031 -12.47104 -12.38172 -12.05194 -11.95084 -11.69587 -11.58463 -11.32222 -11.30016 -11.03955 -10.90399 -10.65378 -10.23977 -10.10155 -9.78612 -9.55493 -9.28376 -8.92333 -8.50429 -8.06757 -7.93795 -6.12001 -4.17267 0.25722 0.91944 2.11774 2.50004 2.71060 2.80042 3.05868 3.13673 3.27200 3.32600 3.34679 3.60340 3.64283 3.93111 4.15490 4.22490 4.38076 4.58790 4.71302 4.81151 4.90924 4.99169 5.02144 5.10546 5.13876 5.17246 5.23340 5.34917 5.41419 5.44857 5.62331 5.76632 5.78256 5.81271 5.98694 6.01870 6.10935 6.12330 6.54047 6.64902 6.86676 6.98107 7.29976 7.35798 7.56041 7.82625 7.91777 8.11905 8.15111 8.73742 8.89179 9.48118 10.96173 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.003664 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.586139 B = 7640.312405 C = 9578.647766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.134 3.866 3 C -0.039 4.039 4 C -0.094 4.094 5 C -0.090 4.090 6 C -0.127 4.127 7 C -0.043 4.043 8 C -0.154 4.154 9 C 0.570 3.430 10 O -0.503 6.503 11 N -0.539 5.539 12 C 0.097 3.903 13 C 0.490 3.510 14 O -0.516 6.516 15 N -0.594 5.594 16 C 0.246 3.754 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.115 3.885 26 C -0.053 4.053 27 C 0.217 3.783 28 N -0.444 5.444 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.265 0.735 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.042 14.280 -14.083 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.040 3.960 3 C -0.041 4.041 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.145 4.145 7 C -0.062 4.062 8 C -0.158 4.158 9 C 0.360 3.640 10 O -0.379 6.379 11 N -0.262 5.262 12 C -0.028 4.028 13 C 0.274 3.726 14 O -0.390 6.390 15 N -0.326 5.326 16 C 0.128 3.872 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.011 4.011 26 C -0.095 4.095 27 C -0.101 4.101 28 N -0.121 5.121 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.405 12.984 -14.660 20.073 hybrid contribution -0.995 0.221 0.921 1.374 sum 3.410 13.205 -13.739 19.359 Atomic orbital electron populations 1.23803 0.91737 1.03938 1.02908 1.18376 0.91274 0.83898 1.02481 1.19453 0.93037 0.92884 0.98684 1.20578 1.00009 0.90251 1.00356 1.21265 0.92272 0.99883 0.97392 1.21188 0.97264 0.94923 1.01086 1.20754 0.98438 0.91972 0.94995 1.20521 0.94845 0.93971 1.06420 1.18074 0.82212 0.88113 0.75582 1.90807 1.39166 1.59527 1.48389 1.45117 1.06388 1.05043 1.69646 1.21596 1.02716 0.81059 0.97398 1.20579 0.78663 0.82793 0.90520 1.90735 1.49081 1.54005 1.45213 1.48223 1.64462 1.10998 1.08947 1.19373 0.97747 0.95154 0.74973 1.21343 0.97223 1.39559 0.98813 0.92408 1.24919 0.97673 0.94932 0.96394 1.69910 1.34898 1.40424 1.07853 0.86573 0.84316 0.78824 0.77800 1.20199 1.21173 1.20188 1.21357 0.95316 0.94174 0.90262 1.19917 1.01199 0.96115 0.92226 1.29072 0.93224 0.93751 0.94029 1.81223 1.08764 1.10462 1.11689 0.85414 0.86624 0.84883 0.84879 0.84892 0.84798 0.86942 0.86696 0.94534 0.93596 0.92554 0.88319 0.90778 0.87461 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.26 29.11 0.42 -1.61 16 2 C 0.13 1.79 6.73 -82.15 -0.55 1.24 16 3 C -0.04 -0.49 6.28 -104.80 -0.66 -1.14 16 4 C -0.09 -0.86 10.08 -39.37 -0.40 -1.26 16 5 C -0.09 -0.69 10.03 -39.50 -0.40 -1.09 16 6 C -0.13 -1.05 10.02 -39.54 -0.40 -1.44 16 7 C -0.04 -0.47 10.09 -39.28 -0.40 -0.87 16 8 C -0.15 -2.15 6.36 -104.88 -0.67 -2.82 16 9 C 0.57 9.49 7.99 -12.78 -0.10 9.39 16 10 O -0.50 -9.56 17.71 5.24 0.09 -9.47 16 11 N -0.54 -8.21 2.25 -114.86 -0.26 -8.47 16 12 C 0.10 1.34 4.67 -5.20 -0.02 1.32 16 13 C 0.49 9.19 7.74 -10.99 -0.09 9.10 16 14 O -0.52 -12.39 16.01 5.56 0.09 -12.30 16 15 N -0.59 -10.75 2.46 -175.06 -0.43 -11.18 16 16 C 0.25 5.81 5.16 -5.19 -0.03 5.78 16 17 C -0.53 -13.94 9.39 -34.44 -0.32 -14.26 16 18 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.12 1.47 5.17 -4.05 -0.02 1.45 16 26 C -0.05 -0.57 6.03 -29.52 -0.18 -0.74 16 27 C 0.22 2.63 15.43 -20.75 -0.32 2.31 16 28 N -0.44 -6.52 18.54 42.16 0.78 -5.74 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.27 7.15 -52.49 -0.38 0.89 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 1.17 6.47 -51.93 -0.34 0.83 16 36 H 0.12 1.36 7.03 -51.93 -0.36 0.99 16 37 H 0.04 0.85 8.07 -51.93 -0.42 0.44 16 38 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 41 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 42 H 0.11 1.00 7.22 -51.93 -0.37 0.63 16 43 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -36.56 384.43 -7.53 -44.10 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.09 Total: -0.96 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -4.23 Total: 6.97 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.83 Total: -50.06 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.56 -7.53 -44.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.430 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds