Wall clock time and date at job start Tue Mar 31 2020 22:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33613 * 1 3 3 C 1.47608 * 126.11521 * 2 1 4 4 C 1.38932 * 133.93822 * 0.02562 * 3 2 1 5 5 C 1.38102 * 119.75355 * 179.97438 * 4 3 2 6 6 C 1.38604 * 120.49180 * 359.97438 * 5 4 3 7 7 C 1.37990 * 120.56031 * 359.97438 * 6 5 4 8 8 C 1.39290 * 119.76694 * 0.27661 * 7 6 5 9 9 C 1.47129 * 133.63391 * 179.74663 * 8 7 6 10 10 O 1.21641 * 125.44208 * 0.03288 * 9 8 7 11 11 N 1.34502 * 109.11364 * 179.97438 * 9 8 7 12 12 C 1.46504 * 124.94294 * 179.97438 * 11 9 8 13 13 C 1.50691 * 109.46983 * 89.97649 * 12 11 9 14 14 O 1.21282 * 120.00509 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99829 * 180.02562 * 13 12 11 16 16 C 1.46510 * 119.99995 * 179.97438 * 15 13 12 17 17 C 1.50691 * 109.47020 * 89.99632 * 16 15 13 18 18 H 1.08001 * 120.00707 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99809 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00030 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47148 * 60.00267 * 21 19 17 23 23 H 1.48499 * 109.46914 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47212 * 299.99954 * 21 19 17 25 25 C 1.46495 * 120.00038 * 359.97438 * 15 13 12 26 26 C 1.52996 * 109.47438 * 89.99913 * 25 15 13 27 27 C 1.47197 * 109.47179 * 179.97438 * 26 25 15 28 28 N 7.74677 * 91.14195 * 193.88637 * 2 1 3 29 29 H 1.07993 * 120.00190 * 0.02975 * 1 2 3 30 30 H 1.08001 * 119.99970 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.12253 * 359.96709 * 4 3 2 32 32 H 1.08002 * 119.75598 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.71710 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.11108 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.46991 * 209.97678 * 12 11 9 36 36 H 1.08996 * 109.46646 * 329.97370 * 12 11 9 37 37 H 1.09001 * 109.46546 * 210.00051 * 16 15 13 38 38 H 1.09001 * 109.46533 * 329.99375 * 16 15 13 39 39 H 0.96998 * 120.00038 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47075 * 210.00339 * 25 15 13 41 41 H 1.09002 * 109.47166 * 329.99644 * 25 15 13 42 42 H 1.09001 * 109.47335 * 300.00266 * 26 25 15 43 43 H 1.09001 * 109.46763 * 60.00391 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3361 0.0000 0.0000 3 6 2.2061 1.1924 0.0000 4 6 1.9662 2.5609 0.0004 5 6 3.0287 3.4430 0.0008 6 6 4.3328 2.9733 0.0013 7 6 4.5902 1.6177 0.0019 8 6 3.5313 0.7127 -0.0037 9 6 3.4514 -0.7564 -0.0095 10 8 4.4026 -1.5146 -0.0099 11 7 2.1585 -1.1271 -0.0131 12 6 1.6829 -2.5128 -0.0198 13 6 1.5183 -2.9942 1.3987 14 8 1.7735 -2.2530 2.3241 15 7 1.0883 -4.2488 1.6389 16 6 0.9287 -4.7170 3.0180 17 6 -0.4699 -4.4167 3.4917 18 1 -1.1702 -3.9265 2.8316 19 6 -0.8560 -4.7686 4.7677 20 7 -0.0034 -5.3660 5.5715 21 14 -2.5900 -4.3970 5.3548 22 1 -3.5683 -5.0913 4.4796 23 1 -2.7516 -4.8715 6.7526 24 1 -2.8282 -2.9322 5.2991 25 6 0.7805 -5.1442 0.5211 26 6 2.0378 -5.9238 0.1310 27 6 1.7284 -6.8240 -0.9918 28 7 1.4905 -7.5189 -1.8588 29 1 -0.5400 0.9352 -0.0005 30 1 -0.5400 -0.9353 0.0004 31 1 0.9524 2.9334 0.0004 32 1 2.8422 4.5068 0.0008 33 1 5.1543 3.6744 0.0020 34 1 5.6092 1.2596 0.0019 35 1 0.7238 -2.5653 -0.5349 36 1 2.4073 -3.1430 -0.5356 37 1 1.1034 -5.7921 3.0591 38 1 1.6472 -4.2074 3.6600 39 1 -0.2750 -5.6133 6.4693 40 1 -0.0018 -5.8422 0.8195 41 1 0.4379 -4.5572 -0.3310 42 1 2.8202 -5.2259 -0.1674 43 1 2.3803 -6.5109 0.9831 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067231167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:41 Heat of formation + Delta-G solvation = 9.740720 kcal Electronic energy + Delta-G solvation = -28590.953796 eV Core-core repulsion = 24601.775319 eV Total energy + Delta-G solvation = -3989.178477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64468 -40.72910 -39.12064 -38.09172 -37.73574 -36.72536 -34.91546 -33.31174 -32.60604 -32.21277 -30.95041 -30.07668 -28.31813 -25.38012 -25.09818 -24.55042 -23.58917 -22.47137 -20.73331 -19.84735 -18.92766 -18.40482 -18.36375 -18.14374 -17.77226 -17.25340 -16.75143 -16.48323 -16.15397 -15.94732 -15.71063 -15.53308 -15.16320 -14.95358 -14.86033 -14.62343 -14.39837 -14.33156 -13.74407 -13.68109 -13.59171 -13.40759 -13.24024 -13.15078 -12.93686 -12.77867 -12.76867 -12.58589 -12.52198 -12.17731 -12.06746 -11.92002 -11.71302 -11.21511 -10.89629 -10.59160 -10.12595 -9.91331 -9.56892 -9.01679 -8.18507 -6.31464 -0.60782 0.18130 1.26876 1.40413 1.43047 1.44282 1.50929 1.59728 1.79389 1.80210 1.99915 2.29855 2.45306 2.83711 3.04770 3.09753 3.13974 3.31744 3.62620 3.85228 3.90161 3.96693 4.08046 4.14052 4.16825 4.35084 4.40200 4.50466 4.52766 4.67073 4.77506 4.85069 4.94937 5.00246 5.04603 5.05447 5.21338 5.29587 5.37841 5.43554 5.56212 5.72797 5.83119 5.87601 5.97247 6.09947 6.55447 6.60761 6.78077 6.81334 7.27140 7.42407 8.88666 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.003664 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.586139 B = 7640.312405 C = 9578.647766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 C -0.052 4.052 4 C -0.095 4.095 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.057 4.057 8 C -0.197 4.197 9 C 0.553 3.447 10 O -0.551 6.551 11 N -0.544 5.544 12 C 0.102 3.898 13 C 0.486 3.514 14 O -0.579 6.579 15 N -0.592 5.592 16 C 0.261 3.739 17 C -0.539 4.539 18 H 0.060 0.940 19 C 0.009 3.991 20 N -0.929 5.929 21 Si 0.961 3.039 22 H -0.259 1.259 23 H -0.285 1.285 24 H -0.277 1.277 25 C 0.110 3.890 26 C -0.042 4.042 27 C 0.247 3.753 28 N -0.484 5.484 29 H 0.160 0.840 30 H 0.117 0.883 31 H 0.164 0.836 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.136 0.864 37 H 0.035 0.965 38 H -0.004 1.004 39 H 0.265 0.735 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 16.818 -15.821 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.005 3.995 3 C -0.053 4.053 4 C -0.113 4.113 5 C -0.094 4.094 6 C -0.139 4.139 7 C -0.076 4.076 8 C -0.200 4.200 9 C 0.346 3.654 10 O -0.431 6.431 11 N -0.266 5.266 12 C -0.022 4.022 13 C 0.273 3.727 14 O -0.458 6.458 15 N -0.323 5.323 16 C 0.140 3.860 17 C -0.577 4.577 18 H 0.078 0.922 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.786 3.214 22 H -0.184 1.184 23 H -0.211 1.211 24 H -0.203 1.203 25 C -0.014 4.014 26 C -0.083 4.083 27 C -0.071 4.071 28 N -0.162 5.162 29 H 0.177 0.823 30 H 0.135 0.865 31 H 0.181 0.819 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.153 0.847 37 H 0.053 0.947 38 H 0.014 0.986 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.144 0.856 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.376 15.514 -16.460 22.743 hybrid contribution -0.390 -0.479 1.472 1.597 sum 1.987 15.035 -14.988 21.322 Atomic orbital electron populations 1.24225 0.90941 1.05549 0.99511 1.18778 0.92078 0.83831 1.04828 1.19663 0.91976 0.94072 0.99636 1.21031 1.02131 0.88871 0.99233 1.21808 0.91360 1.01717 0.94529 1.21607 0.98983 0.93928 0.99374 1.21004 0.97954 0.93191 0.95458 1.20598 0.96784 0.92724 1.09903 1.18711 0.82326 0.89498 0.74906 1.90744 1.40396 1.60782 1.51145 1.45263 1.06429 1.05867 1.69077 1.21728 1.05381 0.81219 0.93871 1.21475 0.77020 0.82096 0.92110 1.90701 1.51732 1.55744 1.47636 1.48086 1.64119 1.11831 1.08270 1.18816 0.95363 0.94282 0.77524 1.21696 0.98164 1.38837 0.99041 0.92152 1.25791 1.01625 0.94875 0.96721 1.70040 1.36875 1.41766 1.08166 0.85559 0.79901 0.78457 0.77460 1.18394 1.21079 1.20271 1.21641 0.96147 0.94073 0.89547 1.19823 1.00658 0.96022 0.91797 1.29013 0.91945 0.92845 0.93274 1.81265 1.10070 1.11750 1.13097 0.82263 0.86479 0.81890 0.80768 0.81611 0.84935 0.82878 0.84671 0.94662 0.98602 0.92621 0.88724 0.86857 0.85551 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 14.26 66.77 0.95 -2.25 16 2 C 0.10 2.53 6.73 39.34 0.26 2.80 16 3 C -0.05 -1.24 6.28 -19.98 -0.13 -1.37 16 4 C -0.09 -1.45 10.08 22.40 0.23 -1.23 16 5 C -0.08 -0.88 10.03 22.32 0.22 -0.65 16 6 C -0.12 -1.70 10.02 22.30 0.22 -1.47 16 7 C -0.06 -1.27 10.09 22.46 0.23 -1.04 16 8 C -0.20 -5.65 6.36 -20.03 -0.13 -5.78 16 9 C 0.55 19.40 7.99 86.62 0.69 20.09 16 10 O -0.55 -22.43 17.71 -4.16 -0.07 -22.50 16 11 N -0.54 -16.71 2.25 -635.71 -1.43 -18.14 16 12 C 0.10 2.73 4.67 85.63 0.40 3.13 16 13 C 0.49 18.49 7.74 87.65 0.68 19.17 16 14 O -0.58 -29.21 16.01 -3.04 -0.05 -29.25 16 15 N -0.59 -21.54 2.46 -826.16 -2.03 -23.57 16 16 C 0.26 12.80 5.16 85.63 0.44 13.24 16 17 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 18 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 19 C 0.01 0.49 5.46 84.66 0.46 0.95 16 20 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 21 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 C 0.11 2.63 5.17 86.38 0.45 3.08 16 26 C -0.04 -0.83 6.03 28.79 0.17 -0.66 16 27 C 0.25 5.57 15.43 89.44 1.38 6.95 16 28 N -0.48 -13.63 18.54 20.01 0.37 -13.26 16 29 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 30 H 0.12 2.24 7.15 -2.91 -0.02 2.22 16 31 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.15 2.73 6.47 -2.39 -0.02 2.71 16 36 H 0.14 3.03 7.03 -2.39 -0.02 3.01 16 37 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 38 H 0.00 -0.25 7.42 -2.39 -0.02 -0.26 16 39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.09 2.40 8.07 -2.39 -0.02 2.38 16 41 H 0.11 1.85 6.44 -2.39 -0.02 1.83 16 42 H 0.13 2.13 7.22 -2.39 -0.02 2.12 16 43 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -86.77 384.43 6.93 -79.84 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.05 Total: 9.43 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 6.78 Total: 26.49 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -2.80 Total: -108.99 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.12 Total: -51.76 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -86.77 6.93 -79.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.578 kcal (2) G-P(sol) polarization free energy of solvation -86.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds