Wall clock time and date at job start Tue Mar 31 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46708 * 180.02562 * 3 2 1 5 5 H 1.48489 * 109.47136 * 300.00127 * 3 2 1 6 6 H 1.48499 * 109.47033 * 60.00481 * 3 2 1 7 7 C 1.39939 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99819 * 168.99862 * 7 2 1 9 9 C 1.41441 * 119.99705 * 348.99769 * 7 2 1 10 10 C 1.40789 * 120.17278 * 151.72316 * 9 7 2 11 11 C 1.37711 * 120.04081 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41471 * 359.71357 * 11 10 9 13 13 C 1.39897 * 120.35219 * 0.56702 * 12 11 10 14 14 C 1.47858 * 120.02324 * 179.71468 * 13 12 11 15 15 O 1.21557 * 119.99712 * 179.72518 * 14 13 12 16 16 N 1.34777 * 119.99610 * 359.72179 * 14 13 12 17 17 C 1.39848 * 119.99471 * 185.13972 * 16 14 13 18 18 C 1.38891 * 120.07273 * 33.63024 * 17 16 14 19 19 C 1.38113 * 119.92583 * 179.72279 * 18 17 16 20 20 C 1.38283 * 120.07238 * 0.25824 * 19 18 17 21 21 C 1.50700 * 119.92746 * 180.02562 * 20 19 18 22 22 N 1.46498 * 109.47376 * 89.99247 * 21 20 19 23 23 C 1.34773 * 120.00425 * 180.02562 * 22 21 20 24 24 N 1.34784 * 120.00330 * 180.02562 * 23 22 21 25 25 O 1.21590 * 119.99821 * 0.02562 * 23 22 21 26 26 C 1.38288 * 120.14633 * 359.97124 * 20 19 18 27 27 C 1.38108 * 120.07118 * 0.02562 * 26 20 19 28 28 C 1.39041 * 119.94722 * 359.43935 * 13 12 11 29 29 H 0.96999 * 119.99708 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.98124 * 0.04245 * 10 9 7 31 31 H 1.08005 * 119.79220 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.82293 * 180.28114 * 12 11 10 33 33 H 0.96999 * 120.00799 * 5.14341 * 16 14 13 34 34 H 1.07998 * 120.03693 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.96076 * 180.22759 * 19 18 17 36 36 H 1.08994 * 109.47275 * 209.99435 * 21 20 19 37 37 H 1.09006 * 109.47240 * 329.99973 * 21 20 19 38 38 H 0.97007 * 120.00134 * 0.02562 * 22 21 20 39 39 H 0.96995 * 119.99513 * 359.97438 * 24 23 22 40 40 H 0.96994 * 119.99687 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.96211 * 180.02562 * 26 20 19 42 42 H 1.08001 * 120.03009 * 180.02562 * 27 26 20 43 43 H 1.07999 * 120.20158 * 180.25649 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0731 -1.2203 -0.1790 9 6 1.3203 -2.4256 0.2327 10 6 1.8007 -3.6285 -0.3192 11 6 1.1287 -4.8086 -0.0908 12 6 -0.0170 -4.8235 0.6851 13 6 -0.5126 -3.6373 1.2368 14 6 -1.7409 -3.6606 2.0595 15 8 -2.1683 -2.6304 2.5429 16 7 -2.3866 -4.8241 2.2734 17 6 -3.6050 -4.8316 2.9599 18 6 -4.4860 -3.7664 2.8257 19 6 -5.6910 -3.7796 3.5007 20 6 -6.0182 -4.8494 4.3135 21 6 -7.3341 -4.8606 5.0480 22 7 -8.3544 -5.4983 4.2122 23 6 -9.6174 -5.6208 4.6663 24 7 -10.5560 -6.2079 3.8975 25 8 -9.9101 -5.2017 5.7695 26 6 -5.1411 -5.9094 4.4530 27 6 -3.9347 -5.9024 3.7808 28 6 0.1541 -2.4373 1.0157 29 1 -0.4850 0.8401 0.0004 30 1 2.6970 -3.6258 -0.9218 31 1 1.5010 -5.7291 -0.5157 32 1 -0.5340 -5.7551 0.8618 33 1 -2.0064 -5.6563 1.9512 34 1 -4.2310 -2.9305 2.1912 35 1 -6.3781 -2.9532 3.3938 36 1 -7.2261 -5.4181 5.9783 37 1 -7.6347 -3.8368 5.2706 38 1 -8.1210 -5.8324 3.3319 39 1 -10.3225 -6.5419 3.0174 40 1 -11.4651 -6.2957 4.2243 41 1 -5.3999 -6.7436 5.0883 42 1 -3.2504 -6.7308 3.8899 43 1 -0.2225 -1.5198 1.4432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067239666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:43 Heat of formation + Delta-G solvation = -25.386055 kcal Electronic energy + Delta-G solvation = -27049.511621 eV Core-core repulsion = 23058.809933 eV Total energy + Delta-G solvation = -3990.701688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44795 -39.95089 -38.61542 -37.15642 -35.39848 -34.22836 -33.85362 -33.56939 -30.98516 -30.84192 -29.66175 -29.47090 -26.00234 -25.30069 -23.22381 -22.79032 -21.49400 -21.23380 -20.91988 -19.66039 -18.62290 -18.04950 -17.70648 -17.38345 -16.16221 -15.75905 -15.50645 -15.23800 -15.10525 -14.98545 -14.77677 -14.42177 -14.19314 -14.02487 -13.64470 -13.44293 -13.27387 -12.80682 -12.78394 -12.63526 -12.61494 -11.75106 -11.62782 -11.25847 -11.21426 -11.17174 -10.83949 -10.64096 -10.57113 -10.16862 -10.08060 -10.00758 -9.80754 -9.35518 -9.27131 -9.25040 -8.91846 -8.05251 -7.73499 -7.59637 -6.83361 -4.52352 1.10394 1.39114 2.04471 2.70996 2.75455 2.96518 3.04065 3.06408 3.08854 3.36705 3.56855 3.86351 3.89561 4.27770 4.55995 4.56930 4.76985 4.96144 5.16288 5.34549 5.36851 5.47633 5.51642 5.68759 5.71764 5.92491 6.01756 6.13052 6.17072 6.21121 6.39091 6.42907 6.53123 6.59763 6.60626 6.62610 6.85221 6.89343 7.08472 7.13280 7.25424 7.54518 7.59243 7.68150 7.76436 7.89709 8.06736 8.35480 8.40363 8.62855 8.71975 8.74070 10.10476 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.002036 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.675016 B =13747.486155 C =14805.920525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.099 4.099 12 C -0.214 4.214 13 C -0.133 4.133 14 C 0.565 3.435 15 O -0.521 6.521 16 N -0.681 5.681 17 C 0.176 3.824 18 C -0.126 4.126 19 C -0.077 4.077 20 C -0.143 4.143 21 C 0.185 3.815 22 N -0.740 5.740 23 C 0.703 3.297 24 N -0.869 5.869 25 O -0.597 6.597 26 C -0.079 4.079 27 C -0.158 4.158 28 C -0.082 4.082 29 H 0.284 0.716 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.411 0.589 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.398 0.602 39 H 0.397 0.603 40 H 0.414 0.586 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.168 -12.180 3.319 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.117 4.117 12 C -0.235 4.235 13 C -0.137 4.137 14 C 0.357 3.643 15 O -0.397 6.397 16 N -0.326 5.326 17 C 0.080 3.920 18 C -0.146 4.146 19 C -0.096 4.096 20 C -0.144 4.144 21 C 0.062 3.938 22 N -0.396 5.396 23 C 0.402 3.598 24 N -0.437 5.437 25 O -0.476 6.476 26 C -0.098 4.098 27 C -0.178 4.178 28 C -0.103 4.103 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.248 0.752 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.232 0.768 39 H 0.224 0.776 40 H 0.245 0.755 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.673 -10.808 4.582 18.021 hybrid contribution 0.433 -0.122 -1.048 1.140 sum -13.240 -10.930 3.535 17.528 Atomic orbital electron populations 1.69750 1.07454 1.29603 1.34810 1.25969 0.94909 1.01577 0.92352 0.86162 0.80689 0.80641 0.78699 1.18380 1.19872 1.19585 1.19632 0.96162 0.90240 1.42685 0.90005 1.17634 0.91459 0.92617 0.88873 1.21187 1.02634 0.93295 1.05300 1.20450 0.95667 0.96812 0.98784 1.20356 1.00476 0.94989 1.07634 1.19377 0.95629 0.95890 1.02776 1.19039 0.84034 0.82044 0.79162 1.90728 1.67398 1.32470 1.49125 1.43736 1.20568 1.11469 1.56842 1.17928 0.85831 0.95526 0.92725 1.21281 0.92599 0.99357 1.01391 1.20947 0.96058 0.97396 0.95205 1.19695 0.96536 0.96258 1.01911 1.19976 0.83062 0.98477 0.92289 1.45255 1.08038 1.65007 1.21293 1.16008 0.80949 0.78765 0.84125 1.42999 1.12941 1.66605 1.21203 1.90978 1.80845 1.55275 1.20483 1.20774 0.93108 0.97510 0.98400 1.20895 0.98589 0.99743 0.98599 1.21728 0.95815 0.95866 0.96849 0.90494 0.88395 0.88681 0.89176 0.75182 0.84303 0.85725 0.90857 0.90794 0.76789 0.77566 0.75465 0.85794 0.85615 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.35 10.82 55.55 0.60 -19.75 16 2 C 0.07 1.72 5.25 -17.34 -0.09 1.63 16 3 Si 0.91 18.38 29.57 -169.99 -5.03 13.35 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -11.65 9.06 -37.73 -0.34 -11.99 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.10 2.46 5.55 -106.87 -0.59 1.87 16 10 C -0.20 -4.62 9.78 -38.81 -0.38 -5.00 16 11 C -0.10 -1.99 10.01 -39.72 -0.40 -2.38 16 12 C -0.21 -4.21 9.55 -38.91 -0.37 -4.58 16 13 C -0.13 -2.97 5.87 -105.04 -0.62 -3.59 16 14 C 0.56 11.61 7.51 -12.32 -0.09 11.52 16 15 O -0.52 -12.22 14.03 5.32 0.07 -12.15 16 16 N -0.68 -10.74 5.28 -10.71 -0.06 -10.80 16 17 C 0.18 2.55 6.27 -83.72 -0.53 2.03 16 18 C -0.13 -1.89 8.65 -39.39 -0.34 -2.24 16 19 C -0.08 -0.93 9.69 -39.61 -0.38 -1.31 16 20 C -0.14 -1.48 5.25 -104.59 -0.55 -2.03 16 21 C 0.19 1.79 5.79 -5.19 -0.03 1.76 16 22 N -0.74 -6.14 5.55 -66.41 -0.37 -6.51 16 23 C 0.70 7.05 8.84 -86.91 -0.77 6.28 16 24 N -0.87 -4.86 8.88 27.64 0.25 -4.62 16 25 O -0.60 -8.83 17.18 5.29 0.09 -8.74 16 26 C -0.08 -0.79 9.69 -39.61 -0.38 -1.17 16 27 C -0.16 -1.80 9.97 -39.39 -0.39 -2.20 16 28 C -0.08 -2.10 8.20 -38.44 -0.32 -2.42 16 29 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 30 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 31 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.09 1.42 6.39 -52.48 -0.34 1.08 16 33 H 0.41 5.35 6.85 -40.82 -0.28 5.07 16 34 H 0.14 2.44 6.43 -52.49 -0.34 2.10 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.40 2.45 8.48 -40.82 -0.35 2.10 16 39 H 0.40 1.05 8.84 -40.82 -0.36 0.69 16 40 H 0.41 1.94 8.93 -40.82 -0.36 1.58 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.14 3.81 5.77 -52.49 -0.30 3.51 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -32.19 371.89 -10.24 -42.43 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -4.83 Total: 15.01 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -6.57 Total: -13.82 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.42 Total: -41.68 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.17 Total: -20.89 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.19 -10.24 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067239666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.043 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds