Wall clock time and date at job start Tue Mar 31 2020 22:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86802 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46708 * 180.02562 * 3 2 1 5 5 H 1.48489 * 109.47136 * 300.00127 * 3 2 1 6 6 H 1.48499 * 109.47033 * 60.00481 * 3 2 1 7 7 C 1.39939 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99819 * 168.99862 * 7 2 1 9 9 C 1.41441 * 119.99705 * 348.99769 * 7 2 1 10 10 C 1.40789 * 120.17278 * 151.72316 * 9 7 2 11 11 C 1.37711 * 120.04081 * 180.02562 * 10 9 7 12 12 C 1.38373 * 120.41471 * 359.71357 * 11 10 9 13 13 C 1.39897 * 120.35219 * 0.56702 * 12 11 10 14 14 C 1.47858 * 120.02324 * 179.71468 * 13 12 11 15 15 O 1.21557 * 119.99712 * 179.72518 * 14 13 12 16 16 N 1.34777 * 119.99610 * 359.72179 * 14 13 12 17 17 C 1.39848 * 119.99471 * 185.13972 * 16 14 13 18 18 C 1.38891 * 120.07273 * 33.63024 * 17 16 14 19 19 C 1.38113 * 119.92583 * 179.72279 * 18 17 16 20 20 C 1.38283 * 120.07238 * 0.25824 * 19 18 17 21 21 C 1.50700 * 119.92746 * 180.02562 * 20 19 18 22 22 N 1.46498 * 109.47376 * 89.99247 * 21 20 19 23 23 C 1.34773 * 120.00425 * 180.02562 * 22 21 20 24 24 N 1.34784 * 120.00330 * 180.02562 * 23 22 21 25 25 O 1.21590 * 119.99821 * 0.02562 * 23 22 21 26 26 C 1.38288 * 120.14633 * 359.97124 * 20 19 18 27 27 C 1.38108 * 120.07118 * 0.02562 * 26 20 19 28 28 C 1.39041 * 119.94722 * 359.43935 * 13 12 11 29 29 H 0.96999 * 119.99708 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.98124 * 0.04245 * 10 9 7 31 31 H 1.08005 * 119.79220 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.82293 * 180.28114 * 12 11 10 33 33 H 0.96999 * 120.00799 * 5.14341 * 16 14 13 34 34 H 1.07998 * 120.03693 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.96076 * 180.22759 * 19 18 17 36 36 H 1.08994 * 109.47275 * 209.99435 * 21 20 19 37 37 H 1.09006 * 109.47240 * 329.99973 * 21 20 19 38 38 H 0.97007 * 120.00134 * 0.02562 * 22 21 20 39 39 H 0.96995 * 119.99513 * 359.97438 * 24 23 22 40 40 H 0.96994 * 119.99687 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.96211 * 180.02562 * 26 20 19 42 42 H 1.08001 * 120.03009 * 180.02562 * 27 26 20 43 43 H 1.07999 * 120.20158 * 180.25649 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0731 -1.2203 -0.1790 9 6 1.3203 -2.4256 0.2327 10 6 1.8007 -3.6285 -0.3192 11 6 1.1287 -4.8086 -0.0908 12 6 -0.0170 -4.8235 0.6851 13 6 -0.5126 -3.6373 1.2368 14 6 -1.7409 -3.6606 2.0595 15 8 -2.1683 -2.6304 2.5429 16 7 -2.3866 -4.8241 2.2734 17 6 -3.6050 -4.8316 2.9599 18 6 -4.4860 -3.7664 2.8257 19 6 -5.6910 -3.7796 3.5007 20 6 -6.0182 -4.8494 4.3135 21 6 -7.3341 -4.8606 5.0480 22 7 -8.3544 -5.4983 4.2122 23 6 -9.6174 -5.6208 4.6663 24 7 -10.5560 -6.2079 3.8975 25 8 -9.9101 -5.2017 5.7695 26 6 -5.1411 -5.9094 4.4530 27 6 -3.9347 -5.9024 3.7808 28 6 0.1541 -2.4373 1.0157 29 1 -0.4850 0.8401 0.0004 30 1 2.6970 -3.6258 -0.9218 31 1 1.5010 -5.7291 -0.5157 32 1 -0.5340 -5.7551 0.8618 33 1 -2.0064 -5.6563 1.9512 34 1 -4.2310 -2.9305 2.1912 35 1 -6.3781 -2.9532 3.3938 36 1 -7.2261 -5.4181 5.9783 37 1 -7.6347 -3.8368 5.2706 38 1 -8.1210 -5.8324 3.3319 39 1 -10.3225 -6.5419 3.0174 40 1 -11.4651 -6.2957 4.2243 41 1 -5.3999 -6.7436 5.0883 42 1 -3.2504 -6.7308 3.8899 43 1 -0.2225 -1.5198 1.4432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067239666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:42 Heat of formation + Delta-G solvation = -48.728326 kcal Electronic energy + Delta-G solvation = -27050.523818 eV Core-core repulsion = 23058.809933 eV Total energy + Delta-G solvation = -3991.713885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69371 -40.85612 -39.85586 -38.79250 -36.53503 -35.64540 -35.16105 -34.42368 -32.34090 -31.94355 -31.33064 -30.77705 -27.38844 -26.73964 -24.58571 -23.88572 -22.88679 -22.35238 -22.03670 -21.17045 -19.63122 -19.32205 -18.80903 -18.31659 -17.72697 -17.08613 -16.67847 -16.45532 -16.38736 -16.08834 -15.84016 -15.74388 -15.41047 -15.17538 -15.01557 -14.71429 -14.44781 -14.35589 -14.27392 -13.80954 -13.57617 -13.48020 -12.97569 -12.82735 -12.59341 -12.55548 -12.21562 -12.19801 -11.88082 -11.59901 -11.52776 -11.31849 -11.14748 -10.82423 -10.70921 -9.98260 -9.89119 -9.58876 -9.38280 -9.08379 -8.63382 -6.42354 -0.01125 0.42774 0.45823 0.98418 1.36123 1.44520 1.51557 1.92511 2.05646 2.12213 2.18769 2.19666 2.75183 2.88121 3.65494 3.70321 3.74379 3.78307 3.95394 4.05695 4.29826 4.40343 4.43241 4.53000 4.59604 4.74408 4.76048 4.87284 5.05943 5.07704 5.14586 5.22334 5.29232 5.38087 5.43610 5.48628 5.51941 5.59765 5.82211 5.87915 5.91362 6.02182 6.03973 6.07000 6.25810 6.42462 6.60403 6.87171 6.91653 7.11020 7.14888 7.67583 8.32189 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018779 B = 0.002036 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.675016 B =13747.486155 C =14805.920525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.025 3.975 3 Si 0.984 3.016 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.063 3.937 10 C -0.208 4.208 11 C -0.098 4.098 12 C -0.190 4.190 13 C -0.143 4.143 14 C 0.563 3.437 15 O -0.563 6.563 16 N -0.659 5.659 17 C 0.145 3.855 18 C -0.150 4.150 19 C -0.080 4.080 20 C -0.124 4.124 21 C 0.190 3.810 22 N -0.729 5.729 23 C 0.699 3.301 24 N -0.848 5.848 25 O -0.648 6.648 26 C -0.069 4.069 27 C -0.142 4.142 28 C -0.121 4.121 29 H 0.284 0.716 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.425 0.575 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.411 0.589 39 H 0.414 0.586 40 H 0.420 0.580 41 H 0.159 0.841 42 H 0.156 0.844 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 -16.018 3.520 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.188 4.188 3 Si 0.805 3.195 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.525 4.525 8 H 0.102 0.898 9 C 0.061 3.939 10 C -0.228 4.228 11 C -0.116 4.116 12 C -0.209 4.209 13 C -0.146 4.146 14 C 0.355 3.645 15 O -0.442 6.442 16 N -0.306 5.306 17 C 0.051 3.949 18 C -0.170 4.170 19 C -0.099 4.099 20 C -0.125 4.125 21 C 0.066 3.934 22 N -0.386 5.386 23 C 0.396 3.604 24 N -0.417 5.417 25 O -0.531 6.531 26 C -0.087 4.087 27 C -0.163 4.163 28 C -0.142 4.142 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.266 0.734 34 H 0.119 0.881 35 H 0.149 0.851 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.247 0.753 39 H 0.245 0.755 40 H 0.253 0.747 41 H 0.176 0.824 42 H 0.173 0.827 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.319 -14.740 4.722 21.085 hybrid contribution 0.459 0.791 -1.071 1.409 sum -13.859 -13.949 3.651 20.000 Atomic orbital electron populations 1.69869 1.09030 1.30262 1.36850 1.26837 0.95553 1.04885 0.91543 0.85117 0.79563 0.76152 0.78660 1.17443 1.19032 1.19667 1.19884 0.96407 0.91370 1.44881 0.89845 1.17975 0.92097 0.94016 0.89794 1.21501 1.03098 0.93395 1.04771 1.20958 0.95089 0.97561 0.97954 1.20922 0.99687 0.95674 1.04636 1.19675 0.96092 0.95952 1.02912 1.18866 0.83836 0.82909 0.78938 1.90711 1.68322 1.34361 1.50822 1.43350 1.20634 1.10304 1.56265 1.18143 0.85256 0.96890 0.94645 1.21122 0.94453 0.99002 1.02469 1.21001 0.95189 0.98447 0.95271 1.19756 0.96831 0.95523 1.00384 1.19861 0.82798 0.98262 0.92516 1.45040 1.07369 1.64531 1.21628 1.16210 0.81633 0.78726 0.83785 1.42801 1.12461 1.65067 1.21421 1.90948 1.81712 1.57542 1.22892 1.21151 0.92003 0.97927 0.97652 1.21173 0.99295 0.98992 0.96799 1.21507 0.97534 0.96094 0.99071 0.90502 0.87158 0.84009 0.84126 0.73434 0.88105 0.85105 0.90359 0.91861 0.75258 0.75544 0.74709 0.82363 0.82673 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.22 10.82 21.83 0.24 -45.98 16 2 C 0.03 1.31 5.25 85.25 0.45 1.76 16 3 Si 0.98 39.56 29.57 68.60 2.03 41.58 16 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.50 -26.60 9.06 23.47 0.21 -26.39 16 8 H 0.08 4.23 7.87 -2.91 -0.02 4.21 16 9 C 0.06 3.36 5.55 -21.32 -0.12 3.24 16 10 C -0.21 -9.32 9.78 22.77 0.22 -9.10 16 11 C -0.10 -3.63 10.01 22.18 0.22 -3.40 16 12 C -0.19 -6.92 9.55 22.70 0.22 -6.70 16 13 C -0.14 -6.47 5.87 -20.14 -0.12 -6.58 16 14 C 0.56 23.73 7.51 86.79 0.65 24.39 16 15 O -0.56 -28.26 14.03 -3.90 -0.05 -28.31 16 16 N -0.66 -19.97 5.28 -306.08 -1.62 -21.59 16 17 C 0.15 4.04 6.27 38.18 0.24 4.28 16 18 C -0.15 -4.63 8.65 22.40 0.19 -4.44 16 19 C -0.08 -1.90 9.69 22.25 0.22 -1.68 16 20 C -0.12 -2.27 5.25 -19.84 -0.10 -2.37 16 21 C 0.19 3.25 5.79 85.63 0.50 3.75 16 22 N -0.73 -10.31 5.55 -482.30 -2.68 -12.98 16 23 C 0.70 12.67 8.84 179.05 1.58 14.25 16 24 N -0.85 -7.44 8.88 -184.74 -1.64 -9.08 16 25 O -0.65 -18.58 17.18 -4.00 -0.07 -18.65 16 26 C -0.07 -1.09 9.69 22.25 0.22 -0.88 16 27 C -0.14 -2.74 9.97 22.40 0.22 -2.52 16 28 C -0.12 -6.58 8.20 23.01 0.19 -6.39 16 29 H 0.28 14.57 8.30 -92.71 -0.77 13.80 16 30 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 32 H 0.14 3.67 6.39 -2.91 -0.02 3.65 16 33 H 0.43 9.67 6.85 -92.71 -0.64 9.03 16 34 H 0.10 3.88 6.43 -2.91 -0.02 3.86 16 35 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 37 H 0.06 1.26 8.08 -2.38 -0.02 1.24 16 38 H 0.41 3.77 8.48 -92.70 -0.79 2.98 16 39 H 0.41 0.92 8.84 -92.71 -0.82 0.10 16 40 H 0.42 3.04 8.93 -92.71 -0.83 2.21 16 41 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.10 6.15 5.77 -2.91 -0.02 6.14 16 Total: -1.00 -78.04 371.89 -0.76 -78.79 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -1.95 Total: 35.00 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 4.99 Total: -18.78 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -5.70 Total: -89.63 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.12 Total: -46.96 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Total: -78.04 -0.76 -78.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067239666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.065 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds