Wall clock time and date at job start Tue Mar 31 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47162 * 274.97957 * 3 2 1 5 5 H 1.48503 * 109.47149 * 34.98633 * 3 2 1 6 6 H 1.48508 * 109.47020 * 154.98099 * 3 2 1 7 7 C 1.39898 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99733 * 147.61030 * 7 2 1 9 9 C 1.41153 * 120.00420 * 327.60986 * 7 2 1 10 10 C 1.40862 * 120.16354 * 157.92230 * 9 7 2 11 11 C 1.36383 * 119.82631 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16716 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83206 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00005 * 37.79628 * 13 12 11 15 15 O 1.21583 * 120.00099 * 356.69227 * 14 13 12 16 16 N 1.34774 * 120.00284 * 176.69459 * 14 13 12 17 17 C 1.46502 * 120.00121 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47071 * 179.97438 * 17 16 14 19 19 C 1.38380 * 119.92524 * 269.98337 * 18 17 16 20 20 C 1.38342 * 120.28838 * 180.02562 * 19 18 17 21 21 C 1.37972 * 120.14445 * 359.69776 * 20 19 18 22 22 C 1.39559 * 119.85295 * 0.57225 * 21 20 19 23 23 C 1.47846 * 120.14333 * 179.72909 * 22 21 20 24 24 N 1.34776 * 120.00284 * 359.72033 * 23 22 21 25 25 O 1.21552 * 119.99847 * 179.72938 * 23 22 21 26 26 C 1.37932 * 119.92613 * 89.99913 * 18 17 16 27 27 C 1.39483 * 120.33770 * 0.25564 * 12 11 10 28 28 C 1.36376 * 120.16304 * 359.43586 * 27 12 11 29 29 H 0.96995 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.09223 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.91359 * 179.97438 * 11 10 9 32 32 H 0.96999 * 120.00597 * 217.79522 * 13 12 11 33 33 H 0.97009 * 119.99892 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.46781 * 60.00370 * 17 16 14 35 35 H 1.08995 * 109.47050 * 299.99993 * 17 16 14 36 36 H 1.08004 * 119.85649 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.92296 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.07551 * 180.27646 * 21 20 19 39 39 H 0.97008 * 119.99958 * 0.02562 * 24 23 22 40 40 H 0.96996 * 120.00719 * 179.72724 * 24 23 22 41 41 H 1.07998 * 120.07588 * 0.02727 * 26 18 17 42 42 H 1.08000 * 119.92022 * 179.70358 * 27 12 11 43 43 H 1.07998 * 120.08549 * 180.25361 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4969 2.6200 0.8028 6 1 3.5891 1.4121 0.5922 7 6 2.0083 -1.2116 0.0005 8 1 2.9623 -1.2845 -0.5005 9 6 1.4672 -2.3386 0.6558 10 6 1.8850 -3.6349 0.2959 11 6 1.3573 -4.7190 0.9332 12 6 0.4061 -4.5468 1.9387 13 7 -0.1284 -5.6586 2.5844 14 6 0.6568 -6.7177 2.8639 15 8 1.8166 -6.7277 2.4992 16 7 0.1565 -7.7658 3.5477 17 6 1.0099 -8.9173 3.8510 18 6 0.2157 -9.9430 4.6182 19 6 0.1819 -9.8970 6.0008 20 6 -0.5443 -10.8350 6.7125 21 6 -1.2450 -11.8196 6.0467 22 6 -1.2105 -11.8749 4.6527 23 6 -1.9542 -12.9308 3.9329 24 7 -2.6629 -13.8459 4.6233 25 8 -1.9262 -12.9736 2.7185 26 6 -0.4755 -10.9256 3.9406 27 6 -0.0168 -3.2667 2.2966 28 6 0.5064 -2.1727 1.6726 29 1 -0.4850 0.8400 -0.0004 30 1 2.6211 -3.7699 -0.4826 31 1 1.6762 -5.7135 0.6581 32 1 -1.0659 -5.6710 2.8331 33 1 -0.7690 -7.7581 3.8384 34 1 1.8590 -8.5918 4.4521 35 1 1.3703 -9.3573 2.9213 36 1 0.7255 -9.1259 6.5266 37 1 -0.5663 -10.7939 7.7915 38 1 -1.8152 -12.5486 6.6033 39 1 -2.6854 -13.8116 5.5925 40 1 -3.1540 -14.5362 4.1511 41 1 -0.4477 -10.9608 2.8615 42 1 -0.7573 -3.1413 3.0727 43 1 0.1810 -1.1820 1.9535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076084180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:35 Heat of formation + Delta-G solvation = -19.968631 kcal Electronic energy + Delta-G solvation = -26763.740320 eV Core-core repulsion = 22773.273549 eV Total energy + Delta-G solvation = -3990.466771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63163 -39.80991 -38.73690 -37.36581 -35.12249 -34.34220 -34.08542 -32.99666 -31.50225 -31.46397 -29.50350 -28.87422 -26.41448 -24.66368 -24.50331 -22.30480 -21.61890 -20.81549 -20.67233 -20.06254 -18.63549 -17.93854 -17.27047 -17.18087 -16.60499 -16.47903 -15.64179 -15.30270 -15.17819 -15.06672 -14.82514 -14.74691 -14.15089 -14.01445 -13.90721 -13.25371 -13.20647 -12.84252 -12.67001 -12.56401 -12.05332 -12.02446 -11.93662 -11.52592 -11.36225 -11.11192 -10.90577 -10.50260 -10.48516 -10.19418 -10.17137 -9.69724 -9.66147 -9.43491 -9.33347 -9.08055 -8.92067 -8.63324 -7.48552 -7.07586 -6.82301 -4.21296 0.36116 0.81020 2.38484 2.71516 2.99887 3.05565 3.07968 3.11592 3.16107 3.23724 3.51393 3.74870 3.93249 4.19508 4.28260 4.39487 4.56273 4.60054 4.75124 4.83059 4.92650 5.18209 5.36658 5.54730 5.65243 5.73494 5.78255 5.85724 6.12226 6.23950 6.27075 6.38758 6.47085 6.58398 6.82761 6.83363 6.90037 7.05808 7.15721 7.32638 7.37245 7.65017 7.78424 7.92901 8.01058 8.08911 8.32382 8.54443 8.61411 8.89859 8.96684 9.17534 10.07501 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.001721 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.508161 B =16262.852259 C =16486.981792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.222 4.222 11 C -0.066 4.066 12 C -0.001 4.001 13 N -0.664 5.664 14 C 0.695 3.305 15 O -0.579 6.579 16 N -0.751 5.751 17 C 0.181 3.819 18 C -0.109 4.109 19 C -0.071 4.071 20 C -0.129 4.129 21 C -0.082 4.082 22 C -0.144 4.144 23 C 0.563 3.437 24 N -0.852 5.852 25 O -0.536 6.536 26 C -0.038 4.038 27 C -0.104 4.104 28 C -0.170 4.170 29 H 0.282 0.718 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.390 0.610 33 H 0.393 0.607 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.400 0.600 40 H 0.405 0.595 41 H 0.140 0.860 42 H 0.088 0.912 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 -21.506 15.866 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.108 3.892 10 C -0.242 4.242 11 C -0.087 4.087 12 C -0.094 4.094 13 N -0.310 5.310 14 C 0.396 3.604 15 O -0.456 6.456 16 N -0.408 5.408 17 C 0.057 3.943 18 C -0.110 4.110 19 C -0.089 4.089 20 C -0.147 4.147 21 C -0.100 4.100 22 C -0.147 4.147 23 C 0.349 3.651 24 N -0.416 5.416 25 O -0.413 6.413 26 C -0.058 4.058 27 C -0.125 4.125 28 C -0.190 4.190 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.223 0.777 33 H 0.226 0.774 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.230 0.770 40 H 0.237 0.763 41 H 0.158 0.842 42 H 0.106 0.894 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.063 -21.256 14.720 26.557 hybrid contribution -0.952 0.441 0.711 1.267 sum -7.015 -20.815 15.430 26.843 Atomic orbital electron populations 1.69955 1.08051 1.29740 1.31711 1.25923 0.94341 1.01438 0.91581 0.86531 0.81548 0.80946 0.79153 1.19515 1.19950 1.18124 1.19485 1.05437 0.93809 1.30792 0.90073 1.17590 0.89808 0.91852 0.89934 1.20600 1.07012 0.92307 1.04317 1.20338 0.96475 0.98071 0.93769 1.16855 1.06995 0.84096 1.01427 1.42042 1.11389 1.15993 1.61608 1.16005 0.85082 0.80123 0.79239 1.90916 1.16272 1.80506 1.57941 1.45122 1.14912 1.18681 1.62083 1.19952 0.91708 0.83500 0.99104 1.19978 0.99728 0.97294 0.93986 1.21419 0.96460 0.97600 0.93463 1.21120 0.97929 0.95261 1.00401 1.21307 0.97790 0.98036 0.92913 1.19860 1.02676 0.98394 0.93763 1.18300 0.78488 0.81324 0.86982 1.43751 1.53355 1.33239 1.11297 1.90855 1.62768 1.74079 1.13571 1.21280 0.92050 0.91374 1.01055 1.20148 1.00945 0.91532 0.99854 1.20597 1.02549 0.96556 0.99328 0.90698 0.88785 0.87842 0.77701 0.77394 0.90521 0.90566 0.84969 0.85039 0.85605 0.77017 0.76344 0.84228 0.89377 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.73 11.78 55.55 0.65 -19.08 16 2 C 0.09 2.22 4.77 -17.34 -0.08 2.13 16 3 Si 0.89 18.46 29.66 -169.99 -5.04 13.42 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.47 -12.56 8.94 -37.86 -0.34 -12.90 16 8 H 0.08 2.12 8.02 -52.48 -0.42 1.70 16 9 C 0.11 3.02 5.57 -106.80 -0.60 2.43 16 10 C -0.22 -5.81 9.74 -39.26 -0.38 -6.19 16 11 C -0.07 -1.65 8.59 -39.79 -0.34 -1.99 16 12 C 0.00 -0.03 6.25 -83.57 -0.52 -0.55 16 13 N -0.66 -12.08 5.30 -14.10 -0.07 -12.16 16 14 C 0.69 12.50 8.37 -86.92 -0.73 11.78 16 15 O -0.58 -12.94 13.96 5.29 0.07 -12.87 16 16 N -0.75 -9.50 5.55 -66.41 -0.37 -9.87 16 17 C 0.18 2.02 5.79 -5.19 -0.03 1.99 16 18 C -0.11 -0.95 5.24 -104.68 -0.55 -1.50 16 19 C -0.07 -0.49 9.69 -39.49 -0.38 -0.87 16 20 C -0.13 -0.70 10.03 -39.64 -0.40 -1.10 16 21 C -0.08 -0.44 9.54 -39.19 -0.37 -0.81 16 22 C -0.14 -1.17 5.87 -104.97 -0.62 -1.78 16 23 C 0.56 5.10 8.05 -12.33 -0.10 5.00 16 24 N -0.85 -3.84 8.82 30.53 0.27 -3.57 16 25 O -0.54 -7.28 17.18 5.32 0.09 -7.19 16 26 C -0.04 -0.36 9.24 -39.19 -0.36 -0.72 16 27 C -0.10 -2.43 9.90 -39.79 -0.39 -2.82 16 28 C -0.17 -4.42 8.74 -39.26 -0.34 -4.76 16 29 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 30 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.10 2.56 6.45 -52.49 -0.34 2.23 16 32 H 0.39 5.63 8.84 -40.82 -0.36 5.27 16 33 H 0.39 3.93 8.48 -40.82 -0.35 3.58 16 34 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 37 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 38 H 0.13 0.25 6.41 -52.48 -0.34 -0.08 16 39 H 0.40 0.56 6.86 -40.82 -0.28 0.28 16 40 H 0.41 1.42 8.93 -40.82 -0.36 1.05 16 41 H 0.14 1.49 7.65 -52.49 -0.40 1.09 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.11 2.79 6.52 -52.49 -0.34 2.45 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -35.00 372.78 -10.17 -45.17 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -4.86 Total: 13.20 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -6.54 Total: -12.67 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.48 Total: -44.68 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.17 Total: -20.05 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.04 Total: 13.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.00 -10.17 -45.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.202 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds