Wall clock time and date at job start Tue Mar 31 2020 22:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48498 * 109.47162 * 274.97957 * 3 2 1 5 5 H 1.48503 * 109.47149 * 34.98633 * 3 2 1 6 6 H 1.48508 * 109.47020 * 154.98099 * 3 2 1 7 7 C 1.39898 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99733 * 147.61030 * 7 2 1 9 9 C 1.41153 * 120.00420 * 327.60986 * 7 2 1 10 10 C 1.40862 * 120.16354 * 157.92230 * 9 7 2 11 11 C 1.36383 * 119.82631 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16716 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83206 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00005 * 37.79628 * 13 12 11 15 15 O 1.21583 * 120.00099 * 356.69227 * 14 13 12 16 16 N 1.34774 * 120.00284 * 176.69459 * 14 13 12 17 17 C 1.46502 * 120.00121 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47071 * 179.97438 * 17 16 14 19 19 C 1.38380 * 119.92524 * 269.98337 * 18 17 16 20 20 C 1.38342 * 120.28838 * 180.02562 * 19 18 17 21 21 C 1.37972 * 120.14445 * 359.69776 * 20 19 18 22 22 C 1.39559 * 119.85295 * 0.57225 * 21 20 19 23 23 C 1.47846 * 120.14333 * 179.72909 * 22 21 20 24 24 N 1.34776 * 120.00284 * 359.72033 * 23 22 21 25 25 O 1.21552 * 119.99847 * 179.72938 * 23 22 21 26 26 C 1.37932 * 119.92613 * 89.99913 * 18 17 16 27 27 C 1.39483 * 120.33770 * 0.25564 * 12 11 10 28 28 C 1.36376 * 120.16304 * 359.43586 * 27 12 11 29 29 H 0.96995 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.09223 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.91359 * 179.97438 * 11 10 9 32 32 H 0.96999 * 120.00597 * 217.79522 * 13 12 11 33 33 H 0.97009 * 119.99892 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.46781 * 60.00370 * 17 16 14 35 35 H 1.08995 * 109.47050 * 299.99993 * 17 16 14 36 36 H 1.08004 * 119.85649 * 359.97438 * 19 18 17 37 37 H 1.08000 * 119.92296 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.07551 * 180.27646 * 21 20 19 39 39 H 0.97008 * 119.99958 * 0.02562 * 24 23 22 40 40 H 0.96996 * 120.00719 * 179.72724 * 24 23 22 41 41 H 1.07998 * 120.07588 * 0.02727 * 26 18 17 42 42 H 1.08000 * 119.92022 * 179.70358 * 27 12 11 43 43 H 1.07998 * 120.08549 * 180.25361 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4969 2.6200 0.8028 6 1 3.5891 1.4121 0.5922 7 6 2.0083 -1.2116 0.0005 8 1 2.9623 -1.2845 -0.5005 9 6 1.4672 -2.3386 0.6558 10 6 1.8850 -3.6349 0.2959 11 6 1.3573 -4.7190 0.9332 12 6 0.4061 -4.5468 1.9387 13 7 -0.1284 -5.6586 2.5844 14 6 0.6568 -6.7177 2.8639 15 8 1.8166 -6.7277 2.4992 16 7 0.1565 -7.7658 3.5477 17 6 1.0099 -8.9173 3.8510 18 6 0.2157 -9.9430 4.6182 19 6 0.1819 -9.8970 6.0008 20 6 -0.5443 -10.8350 6.7125 21 6 -1.2450 -11.8196 6.0467 22 6 -1.2105 -11.8749 4.6527 23 6 -1.9542 -12.9308 3.9329 24 7 -2.6629 -13.8459 4.6233 25 8 -1.9262 -12.9736 2.7185 26 6 -0.4755 -10.9256 3.9406 27 6 -0.0168 -3.2667 2.2966 28 6 0.5064 -2.1727 1.6726 29 1 -0.4850 0.8400 -0.0004 30 1 2.6211 -3.7699 -0.4826 31 1 1.6762 -5.7135 0.6581 32 1 -1.0659 -5.6710 2.8331 33 1 -0.7690 -7.7581 3.8384 34 1 1.8590 -8.5918 4.4521 35 1 1.3703 -9.3573 2.9213 36 1 0.7255 -9.1259 6.5266 37 1 -0.5663 -10.7939 7.7915 38 1 -1.8152 -12.5486 6.6033 39 1 -2.6854 -13.8116 5.5925 40 1 -3.1540 -14.5362 4.1511 41 1 -0.4477 -10.9608 2.8615 42 1 -0.7573 -3.1413 3.0727 43 1 0.1810 -1.1820 1.9535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076084180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:34 Heat of formation + Delta-G solvation = -45.668466 kcal Electronic energy + Delta-G solvation = -26764.854748 eV Core-core repulsion = 22773.273549 eV Total energy + Delta-G solvation = -3991.581199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49064 -41.07629 -39.57421 -39.05977 -36.40568 -35.85483 -34.90945 -34.69332 -32.36871 -32.04687 -31.43267 -30.67649 -27.56346 -26.22177 -25.19489 -23.51312 -22.86178 -22.54459 -21.70111 -21.32298 -19.62259 -19.19645 -18.95144 -18.23617 -17.72969 -17.05351 -17.00415 -16.65640 -16.30826 -15.96058 -15.85692 -15.76621 -15.69223 -15.25883 -14.91048 -14.71917 -14.47439 -13.96859 -13.92863 -13.81564 -13.73616 -13.44117 -13.25142 -12.82198 -12.67133 -12.65960 -12.31672 -12.10297 -11.92279 -11.56853 -11.30843 -11.23299 -10.95247 -10.77164 -10.51173 -10.12969 -9.97690 -9.95238 -9.45582 -8.96405 -8.69189 -6.20676 -0.21021 0.22378 0.88677 1.15693 1.38946 1.45930 1.57158 1.69293 1.96766 2.19447 2.22893 2.49120 2.67907 2.83791 3.47028 3.54469 3.73268 3.80665 3.87862 4.11197 4.25805 4.27412 4.40622 4.51017 4.58797 4.66624 4.82397 4.91689 4.97050 5.11993 5.17705 5.23908 5.29348 5.36332 5.41915 5.47610 5.50004 5.64378 5.78548 5.80599 5.87900 6.04769 6.13349 6.23043 6.39060 6.39680 6.64371 6.91375 7.02192 7.16612 7.26139 7.68277 8.22893 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029451 B = 0.001721 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.508161 B =16262.852259 C =16486.981792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.052 3.948 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.082 3.918 10 C -0.244 4.244 11 C -0.078 4.078 12 C 0.013 3.987 13 N -0.657 5.657 14 C 0.693 3.307 15 O -0.625 6.625 16 N -0.726 5.726 17 C 0.183 3.817 18 C -0.115 4.115 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.064 4.064 22 C -0.157 4.157 23 C 0.558 3.442 24 N -0.827 5.827 25 O -0.594 6.594 26 C -0.056 4.056 27 C -0.100 4.100 28 C -0.187 4.187 29 H 0.294 0.706 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.412 0.588 33 H 0.410 0.590 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.419 0.581 40 H 0.413 0.587 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -22.159 19.477 30.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.079 3.921 10 C -0.264 4.264 11 C -0.099 4.099 12 C -0.081 4.081 13 N -0.305 5.305 14 C 0.394 3.606 15 O -0.506 6.506 16 N -0.383 5.383 17 C 0.059 3.941 18 C -0.116 4.116 19 C -0.088 4.088 20 C -0.139 4.139 21 C -0.083 4.083 22 C -0.160 4.160 23 C 0.344 3.656 24 N -0.392 5.392 25 O -0.476 6.476 26 C -0.076 4.076 27 C -0.121 4.121 28 C -0.207 4.207 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.248 0.752 33 H 0.246 0.754 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.252 0.748 40 H 0.245 0.755 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.759 -21.985 18.415 29.709 hybrid contribution -0.538 0.422 -0.298 0.746 sum -8.297 -21.563 18.116 29.360 Atomic orbital electron populations 1.69947 1.09349 1.31418 1.31588 1.26717 0.95085 1.04393 0.90514 0.85373 0.79636 0.76179 0.79637 1.18480 1.18373 1.18602 1.19686 1.05801 0.95385 1.32600 0.90836 1.17910 0.90906 0.92313 0.90987 1.20710 1.07831 0.92787 1.05056 1.20427 0.97388 0.97401 0.94652 1.16884 1.05460 0.85569 1.00176 1.41817 1.12523 1.14924 1.61269 1.16169 0.84448 0.80745 0.79238 1.90893 1.18426 1.81499 1.59733 1.44934 1.15829 1.17409 1.60138 1.19977 0.92016 0.83340 0.98771 1.19646 1.00479 0.96789 0.94696 1.21627 0.96394 0.98325 0.92415 1.21520 0.96347 0.93965 1.02020 1.21726 0.96784 0.98270 0.91499 1.19882 1.02968 0.98061 0.95102 1.18560 0.78604 0.81972 0.86415 1.43559 1.51497 1.31850 1.12250 1.90828 1.65054 1.75686 1.16048 1.21145 0.93572 0.92777 1.00108 1.20416 1.00981 0.90730 0.99936 1.20632 1.03136 0.97149 0.99778 0.89501 0.89172 0.88310 0.75164 0.75411 0.90591 0.92333 0.83734 0.81583 0.81598 0.74842 0.75537 0.86873 0.85761 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.22 11.78 21.82 0.26 -40.97 16 2 C 0.05 2.65 4.77 85.24 0.41 3.05 16 3 Si 0.97 38.02 29.66 68.60 2.03 40.05 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.51 -28.32 8.94 23.39 0.21 -28.11 16 8 H 0.07 4.04 8.02 -2.91 -0.02 4.02 16 9 C 0.08 4.62 5.57 -21.28 -0.12 4.50 16 10 C -0.24 -13.38 9.74 22.48 0.22 -13.16 16 11 C -0.08 -4.03 8.59 22.14 0.19 -3.84 16 12 C 0.01 0.59 6.25 38.56 0.24 0.83 16 13 N -0.66 -23.21 5.30 -316.78 -1.68 -24.89 16 14 C 0.69 24.78 8.37 179.06 1.50 26.28 16 15 O -0.63 -28.53 13.96 -3.98 -0.06 -28.59 16 16 N -0.73 -17.86 5.55 -482.30 -2.68 -20.54 16 17 C 0.18 4.09 5.79 85.63 0.50 4.59 16 18 C -0.12 -1.91 5.24 -19.90 -0.10 -2.02 16 19 C -0.07 -0.75 9.69 22.33 0.22 -0.54 16 20 C -0.12 -0.75 10.03 22.23 0.22 -0.53 16 21 C -0.06 -0.42 9.54 22.53 0.21 -0.21 16 22 C -0.16 -2.31 5.87 -20.09 -0.12 -2.43 16 23 C 0.56 9.68 8.05 86.79 0.70 10.38 16 24 N -0.83 -5.51 8.82 -175.60 -1.55 -7.06 16 25 O -0.59 -16.83 17.18 -3.88 -0.07 -16.89 16 26 C -0.06 -1.07 9.24 22.52 0.21 -0.86 16 27 C -0.10 -4.60 9.90 22.14 0.22 -4.38 16 28 C -0.19 -9.86 8.74 22.48 0.20 -9.67 16 29 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 30 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.10 5.11 6.45 -2.91 -0.02 5.09 16 32 H 0.41 10.98 8.84 -92.71 -0.82 10.16 16 33 H 0.41 7.49 8.48 -92.70 -0.79 6.70 16 34 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 35 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 38 H 0.17 -0.31 6.41 -2.91 -0.02 -0.33 16 39 H 0.42 -0.46 6.86 -92.70 -0.64 -1.09 16 40 H 0.41 2.09 8.93 -92.71 -0.83 1.26 16 41 H 0.11 2.69 7.65 -2.91 -0.02 2.67 16 42 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 43 H 0.10 5.30 6.52 -2.91 -0.02 5.28 16 Total: -1.00 -81.33 372.78 -0.79 -82.12 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -1.95 Total: 32.87 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 4.90 Total: -16.10 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -5.65 Total: -93.46 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.12 Total: -45.48 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -81.33 -0.79 -82.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076084180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.453 kcal (2) G-P(sol) polarization free energy of solvation -81.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds