Wall clock time and date at job start Tue Mar 31 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39671 * 110.99697 * 176.81214 * 14 13 12 16 16 C 1.38912 * 120.07387 * 123.52765 * 15 14 13 17 17 C 1.38103 * 119.92676 * 179.76398 * 16 15 14 18 18 C 1.38292 * 120.06919 * 0.50862 * 17 16 15 19 19 S 1.76204 * 119.92006 * 179.71713 * 18 17 16 20 20 N 1.65597 * 107.22229 * 270.02138 * 19 18 17 21 21 O 1.42101 * 106.40300 * 23.56883 * 19 18 17 22 22 O 1.42106 * 106.40070 * 156.48009 * 19 18 17 23 23 C 1.38280 * 120.15485 * 359.74409 * 18 17 16 24 24 C 1.38106 * 120.07290 * 0.02562 * 23 18 17 25 25 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 26 26 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 33 33 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 34 34 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 35 35 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 36 36 H 1.08004 * 120.03785 * 0.02562 * 16 15 14 37 37 H 1.07994 * 119.96789 * 180.25013 * 17 16 15 38 38 H 0.96996 * 119.99853 * 0.02562 * 20 19 18 39 39 H 0.96996 * 119.99910 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.96329 * 179.97438 * 23 18 17 41 41 H 1.08004 * 120.03764 * 180.02562 * 24 23 18 42 42 H 1.08999 * 109.48998 * 299.35229 * 25 14 13 43 43 H 1.09002 * 109.48626 * 179.28754 * 25 14 13 44 44 H 1.09001 * 109.48531 * 303.15255 * 26 11 10 45 45 H 1.09000 * 109.48854 * 63.21719 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4905 -2.6366 0.0175 12 6 6.0229 -2.0854 -1.2364 13 6 7.5503 -2.0290 -1.1580 14 7 8.0758 -3.3797 -0.9147 15 6 9.4725 -3.3797 -0.9084 16 6 10.1637 -3.8574 0.1979 17 6 11.5447 -3.8604 0.1989 18 6 12.2395 -3.3789 -0.8955 19 16 14.0015 -3.3777 -0.8869 20 7 14.4878 -1.9289 -0.2491 21 8 14.3989 -4.3782 0.0406 22 8 14.4094 -3.3739 -2.2482 23 6 11.5547 -2.8977 -1.9963 24 6 10.1737 -2.8962 -2.0058 25 6 7.5435 -3.9309 0.3391 26 6 6.0161 -3.9873 0.2607 27 1 -0.4849 0.8400 0.0004 28 1 3.8786 -0.6821 -0.8838 29 1 3.8711 -0.6785 0.8962 30 1 3.6545 -3.1486 0.9003 31 1 3.6618 -3.1522 -0.8796 32 1 5.7248 -2.7223 -2.0692 33 1 5.6292 -1.0803 -1.3878 34 1 7.8485 -1.3705 -0.3422 35 1 7.9489 -1.6475 -2.0980 36 1 9.6216 -4.2299 1.0545 37 1 12.0826 -4.2354 1.0570 38 1 13.8272 -1.2776 0.0341 39 1 15.4331 -1.7320 -0.1579 40 1 12.1004 -2.5220 -2.8491 41 1 9.6394 -2.5206 -2.8660 42 1 7.8416 -3.2940 1.1719 43 1 7.9372 -4.9360 0.4906 44 1 5.6174 -4.3688 1.2007 45 1 5.7178 -4.6458 -0.5551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076651217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:53 Heat of formation + Delta-G solvation = -29.706406 kcal Electronic energy + Delta-G solvation = -26750.110220 eV Core-core repulsion = 22894.665139 eV Total energy + Delta-G solvation = -3855.445081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77187 -38.56198 -37.44390 -36.14467 -35.91070 -33.57562 -33.10595 -32.01630 -31.21434 -30.79393 -29.54049 -26.68523 -24.59791 -23.86624 -22.48121 -22.32755 -20.42840 -19.95288 -19.70856 -18.84812 -17.76484 -17.64792 -16.88206 -16.41396 -16.20294 -15.55621 -15.40758 -15.08327 -14.93490 -14.64801 -14.38554 -14.12296 -13.96943 -13.87724 -13.48932 -13.11682 -12.88252 -12.64866 -12.49010 -12.40861 -12.31634 -12.16671 -11.80799 -11.52862 -11.46657 -11.28431 -11.15901 -11.09519 -10.89230 -10.88487 -10.34939 -10.01166 -9.95847 -9.78450 -9.47286 -9.28576 -8.59506 -8.46311 -8.05314 -6.10620 -4.09359 0.05971 0.44823 0.92743 2.73516 2.98219 3.25522 3.32914 3.33817 3.37885 3.44941 4.09978 4.12558 4.39562 4.40657 4.47568 4.62609 4.84531 4.88698 4.93025 5.12004 5.15284 5.20034 5.23405 5.24553 5.35407 5.49486 5.54464 5.55439 5.57945 5.71050 5.76089 5.84262 5.86520 5.93295 6.09166 6.21635 6.25318 6.57306 6.59095 6.64280 6.79235 7.01190 7.14720 7.41619 7.48813 7.75612 8.45815 8.93167 9.51326 11.02669 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.002031 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.285365 B =13779.756610 C =14294.587314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.006 4.006 10 C 0.071 3.929 11 N -0.544 5.544 12 C 0.052 3.948 13 C 0.062 3.938 14 N -0.492 5.492 15 C 0.183 3.817 16 C -0.197 4.197 17 C 0.011 3.989 18 C -0.711 4.711 19 S 2.705 3.295 20 N -1.252 6.252 21 O -0.968 6.968 22 O -0.968 6.968 23 C 0.007 3.993 24 C -0.166 4.166 25 C 0.051 3.949 26 C 0.054 3.946 27 H 0.264 0.736 28 H 0.010 0.990 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.417 0.583 39 H 0.419 0.581 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.071 -4.852 -0.481 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.055 4.055 11 N -0.269 5.269 12 C -0.077 4.077 13 C -0.063 4.063 14 N -0.204 5.204 15 C 0.082 3.918 16 C -0.218 4.218 17 C -0.009 4.009 18 C -0.801 4.801 19 S 2.795 3.205 20 N -0.926 5.926 21 O -0.958 6.958 22 O -0.957 6.957 23 C -0.013 4.013 24 C -0.188 4.188 25 C -0.076 4.076 26 C -0.075 4.075 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.244 0.756 39 H 0.249 0.751 40 H 0.161 0.839 41 H 0.154 0.846 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 28.270 -5.590 -0.854 28.830 hybrid contribution -0.462 1.330 0.111 1.413 sum 27.808 -4.260 -0.742 28.142 Atomic orbital electron populations 1.69910 1.06323 1.26974 1.50881 1.25008 0.94727 0.99197 0.94461 0.86765 0.80482 0.83516 0.78466 1.20357 1.21381 1.18812 1.21062 0.89342 0.94526 1.51231 0.91117 1.19565 0.96563 0.91579 0.96681 1.22135 0.82721 1.00548 1.00093 1.62311 1.10451 1.20429 1.33707 1.22234 0.92059 1.01927 0.91455 1.22427 0.96020 0.85805 1.02033 1.59096 1.03679 1.22959 1.34707 1.19417 0.88694 0.91028 0.92683 1.21485 0.94623 1.07310 0.98423 1.20791 0.94216 0.90386 0.95540 1.30237 1.25124 1.20821 1.03878 1.01335 0.73095 0.72467 0.73621 1.53094 1.17355 1.37861 1.84311 1.93595 1.81174 1.56818 1.64188 1.93597 1.80911 1.85993 1.35231 1.20783 0.94225 0.91052 0.95260 1.20943 0.93905 1.05341 0.98566 1.22477 0.95851 1.00193 0.89072 1.22160 0.92632 0.91036 1.01671 0.92669 0.97156 0.95744 0.91239 0.95277 0.93928 0.88773 0.92353 0.89524 0.84290 0.84066 0.75629 0.75142 0.83942 0.84552 0.92125 0.89598 0.89690 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C -0.01 -0.14 3.97 -27.88 -0.11 -0.25 16 10 C 0.07 1.35 4.90 -3.83 -0.02 1.33 16 11 N -0.54 -8.46 4.71 -234.47 -1.10 -9.57 16 12 C 0.05 0.73 5.41 -3.77 -0.02 0.71 16 13 C 0.06 0.69 5.38 -3.76 -0.02 0.67 16 14 N -0.49 -5.39 4.75 -170.96 -0.81 -6.20 16 15 C 0.18 1.84 5.64 -83.79 -0.47 1.37 16 16 C -0.20 -1.78 8.82 -39.38 -0.35 -2.12 16 17 C 0.01 0.09 9.51 -39.61 -0.38 -0.29 16 18 C -0.71 -5.89 5.94 -39.55 -0.24 -6.12 16 19 S 2.70 21.34 6.28 -107.50 -0.68 20.67 16 20 N -1.25 -5.12 9.55 60.35 0.58 -4.54 16 21 O -0.97 -10.66 17.28 -57.17 -0.99 -11.64 16 22 O -0.97 -10.67 17.28 -57.17 -0.99 -11.66 16 23 C 0.01 0.06 9.51 -39.61 -0.38 -0.32 16 24 C -0.17 -1.52 9.19 -39.38 -0.36 -1.89 16 25 C 0.05 0.53 4.29 -3.77 -0.02 0.51 16 26 C 0.05 0.68 5.61 -3.77 -0.02 0.65 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.01 0.23 5.93 -51.93 -0.31 -0.08 16 29 H 0.02 0.58 7.19 -51.93 -0.37 0.20 16 30 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 31 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.42 6.34 -51.93 -0.33 1.09 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.82 6.82 -51.93 -0.35 0.46 16 36 H 0.14 1.06 5.81 -52.48 -0.31 0.76 16 37 H 0.14 0.96 7.61 -52.49 -0.40 0.56 16 38 H 0.42 0.88 8.92 -34.46 -0.31 0.57 16 39 H 0.42 1.06 8.96 -34.47 -0.31 0.76 16 40 H 0.14 0.97 7.61 -52.49 -0.40 0.57 16 41 H 0.14 1.09 7.19 -52.48 -0.38 0.71 16 42 H 0.06 0.63 7.57 -51.93 -0.39 0.23 16 43 H 0.09 0.76 7.18 -51.93 -0.37 0.38 16 44 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 367.40 15.07 5.54 5.54 Total: -1.00 -35.85 367.40 -11.50 -47.35 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.34 Total: -1.13 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.81 Total: -18.74 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.57 Total: -46.90 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.98 Total: -23.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 21.34 SS G_CDS: -0.68 Total: 20.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.85 -11.50 -47.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076651217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.644 kcal (2) G-P(sol) polarization free energy of solvation -35.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds