Wall clock time and date at job start Tue Mar 31 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39671 * 110.99697 * 176.81214 * 14 13 12 16 16 C 1.38912 * 120.07387 * 123.52765 * 15 14 13 17 17 C 1.38103 * 119.92676 * 179.76398 * 16 15 14 18 18 C 1.38292 * 120.06919 * 0.50862 * 17 16 15 19 19 S 1.76204 * 119.92006 * 179.71713 * 18 17 16 20 20 N 1.65597 * 107.22229 * 270.02138 * 19 18 17 21 21 O 1.42101 * 106.40300 * 23.56883 * 19 18 17 22 22 O 1.42106 * 106.40070 * 156.48009 * 19 18 17 23 23 C 1.38280 * 120.15485 * 359.74409 * 18 17 16 24 24 C 1.38106 * 120.07290 * 0.02562 * 23 18 17 25 25 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 26 26 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 33 33 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 34 34 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 35 35 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 36 36 H 1.08004 * 120.03785 * 0.02562 * 16 15 14 37 37 H 1.07994 * 119.96789 * 180.25013 * 17 16 15 38 38 H 0.96996 * 119.99853 * 0.02562 * 20 19 18 39 39 H 0.96996 * 119.99910 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.96329 * 179.97438 * 23 18 17 41 41 H 1.08004 * 120.03764 * 180.02562 * 24 23 18 42 42 H 1.08999 * 109.48998 * 299.35229 * 25 14 13 43 43 H 1.09002 * 109.48626 * 179.28754 * 25 14 13 44 44 H 1.09001 * 109.48531 * 303.15255 * 26 11 10 45 45 H 1.09000 * 109.48854 * 63.21719 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4905 -2.6366 0.0175 12 6 6.0229 -2.0854 -1.2364 13 6 7.5503 -2.0290 -1.1580 14 7 8.0758 -3.3797 -0.9147 15 6 9.4725 -3.3797 -0.9084 16 6 10.1637 -3.8574 0.1979 17 6 11.5447 -3.8604 0.1989 18 6 12.2395 -3.3789 -0.8955 19 16 14.0015 -3.3777 -0.8869 20 7 14.4878 -1.9289 -0.2491 21 8 14.3989 -4.3782 0.0406 22 8 14.4094 -3.3739 -2.2482 23 6 11.5547 -2.8977 -1.9963 24 6 10.1737 -2.8962 -2.0058 25 6 7.5435 -3.9309 0.3391 26 6 6.0161 -3.9873 0.2607 27 1 -0.4849 0.8400 0.0004 28 1 3.8786 -0.6821 -0.8838 29 1 3.8711 -0.6785 0.8962 30 1 3.6545 -3.1486 0.9003 31 1 3.6618 -3.1522 -0.8796 32 1 5.7248 -2.7223 -2.0692 33 1 5.6292 -1.0803 -1.3878 34 1 7.8485 -1.3705 -0.3422 35 1 7.9489 -1.6475 -2.0980 36 1 9.6216 -4.2299 1.0545 37 1 12.0826 -4.2354 1.0570 38 1 13.8272 -1.2776 0.0341 39 1 15.4331 -1.7320 -0.1579 40 1 12.1004 -2.5220 -2.8491 41 1 9.6394 -2.5206 -2.8660 42 1 7.8416 -3.2940 1.1719 43 1 7.9372 -4.9360 0.4906 44 1 5.6174 -4.3688 1.2007 45 1 5.7178 -4.6458 -0.5551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076651217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:52 Heat of formation + Delta-G solvation = -59.415404 kcal Electronic energy + Delta-G solvation = -26751.398498 eV Core-core repulsion = 22894.665139 eV Total energy + Delta-G solvation = -3856.733360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55705 -39.49140 -38.18987 -37.04227 -36.86405 -35.04140 -33.99846 -32.85459 -32.61461 -31.61790 -30.72531 -27.93403 -25.64930 -25.22311 -23.40853 -23.08400 -21.91770 -20.98671 -20.41530 -19.46028 -19.06875 -18.30886 -18.26744 -17.14613 -16.82786 -16.46799 -16.31723 -16.30108 -16.13416 -15.77202 -15.49379 -15.30606 -14.99175 -14.70018 -14.59629 -14.51256 -14.00476 -13.81829 -13.39220 -13.22126 -13.16257 -13.14721 -13.02691 -12.87251 -12.62624 -12.41205 -12.27334 -12.08187 -11.86287 -11.77240 -11.69841 -11.47739 -11.37948 -11.30835 -11.03873 -10.75703 -10.11200 -9.34437 -9.18941 -8.30176 -6.34778 -0.56133 -0.23203 0.28440 1.36017 1.38867 1.51236 2.14336 2.32629 2.36223 2.61623 2.81350 2.91489 3.05457 3.47670 3.68074 3.78536 3.87168 3.94414 4.09958 4.18938 4.24181 4.28453 4.40176 4.43930 4.49021 4.54656 4.58340 4.68346 4.77910 4.85299 4.88244 4.92409 4.94350 5.01142 5.06980 5.11810 5.26117 5.30767 5.44912 5.57010 5.62773 5.77509 6.00446 6.11524 6.15055 6.28526 6.36703 6.73239 7.30013 8.86466 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.002031 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.285365 B =13779.756610 C =14294.587314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.002 3.998 10 C 0.084 3.916 11 N -0.547 5.547 12 C 0.050 3.950 13 C 0.070 3.930 14 N -0.500 5.500 15 C 0.168 3.832 16 C -0.200 4.200 17 C 0.005 3.995 18 C -0.707 4.707 19 S 2.729 3.271 20 N -1.236 6.236 21 O -1.000 7.000 22 O -1.000 7.000 23 C 0.002 3.998 24 C -0.172 4.172 25 C 0.056 3.944 26 C 0.053 3.947 27 H 0.266 0.734 28 H 0.019 0.981 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.429 0.571 39 H 0.428 0.572 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.980 -3.889 -0.255 31.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.049 0.951 9 C -0.036 4.036 10 C -0.043 4.043 11 N -0.272 5.272 12 C -0.078 4.078 13 C -0.054 4.054 14 N -0.213 5.213 15 C 0.067 3.933 16 C -0.222 4.222 17 C -0.015 4.015 18 C -0.797 4.797 19 S 2.820 3.180 20 N -0.916 5.916 21 O -0.989 6.989 22 O -0.989 6.989 23 C -0.018 4.018 24 C -0.193 4.193 25 C -0.070 4.070 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.259 0.741 39 H 0.261 0.739 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 31.220 -4.641 -0.626 31.569 hybrid contribution -1.370 0.955 0.045 1.670 sum 29.850 -3.686 -0.580 30.082 Atomic orbital electron populations 1.70069 1.08356 1.28214 1.52509 1.26018 0.95614 1.03614 0.94029 0.85617 0.79529 0.78012 0.79231 1.19039 1.21148 1.16861 1.21417 0.92027 0.93123 1.50644 0.95106 1.19424 0.93228 0.94219 0.96728 1.21797 0.85373 0.97803 0.99374 1.62244 1.07883 1.22470 1.34627 1.22254 0.94199 1.00891 0.90495 1.22325 0.93681 0.86354 1.03086 1.59098 1.04441 1.22721 1.35035 1.19503 0.88160 0.92138 0.93470 1.21668 0.94935 1.06975 0.98585 1.21020 0.94227 0.90193 0.96069 1.30239 1.24985 1.20549 1.03958 1.00370 0.72516 0.72558 0.72575 1.52700 1.18335 1.36798 1.83749 1.93560 1.81754 1.58809 1.64800 1.93562 1.81507 1.86712 1.37141 1.20999 0.94182 0.90896 0.95722 1.21119 0.94243 1.05206 0.98708 1.22454 0.93885 1.01476 0.89202 1.22244 0.94352 0.89155 1.01766 0.92478 0.96248 0.95921 0.91736 0.96434 0.94598 0.89940 0.92429 0.87606 0.83039 0.82655 0.74150 0.73920 0.82574 0.83616 0.91666 0.87651 0.88948 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.95 43.41 27.47 68.60 1.88 45.29 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 7 C -0.53 -30.34 9.66 25.60 0.25 -30.09 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 9 C 0.00 0.08 3.97 29.85 0.12 0.20 16 10 C 0.08 3.20 4.90 86.30 0.42 3.62 16 11 N -0.55 -16.44 4.71 -895.72 -4.22 -20.66 16 12 C 0.05 1.34 5.41 86.31 0.47 1.81 16 13 C 0.07 1.43 5.38 86.31 0.46 1.89 16 14 N -0.50 -9.81 4.75 -694.79 -3.30 -13.11 16 15 C 0.17 2.96 5.64 38.22 0.22 3.17 16 16 C -0.20 -3.09 8.82 22.40 0.20 -2.90 16 17 C 0.00 0.07 9.51 22.25 0.21 0.28 16 18 C -0.71 -10.18 5.94 22.29 0.13 -10.05 16 19 S 2.73 38.47 6.28 -56.49 -0.35 38.11 16 20 N -1.24 -7.26 9.55 37.02 0.35 -6.91 16 21 O -1.00 -20.61 17.28 -128.00 -2.21 -22.82 16 22 O -1.00 -20.70 17.28 -128.00 -2.21 -22.91 16 23 C 0.00 0.03 9.51 22.25 0.21 0.24 16 24 C -0.17 -2.73 9.19 22.40 0.21 -2.53 16 25 C 0.06 1.04 4.29 86.31 0.37 1.41 16 26 C 0.05 1.26 5.61 86.31 0.48 1.74 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.02 0.85 5.93 -2.38 -0.01 0.83 16 29 H 0.02 1.04 7.19 -2.39 -0.02 1.02 16 30 H 0.06 2.48 8.03 -2.38 -0.02 2.46 16 31 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 2.39 6.34 -2.39 -0.02 2.37 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 1.73 6.82 -2.39 -0.02 1.71 16 36 H 0.15 1.87 5.81 -2.91 -0.02 1.85 16 37 H 0.16 1.74 7.61 -2.91 -0.02 1.72 16 38 H 0.43 0.64 8.92 -96.75 -0.86 -0.22 16 39 H 0.43 1.20 8.96 -96.75 -0.87 0.33 16 40 H 0.16 1.78 7.61 -2.91 -0.02 1.76 16 41 H 0.15 1.96 7.19 -2.91 -0.02 1.94 16 42 H 0.07 1.17 7.57 -2.39 -0.02 1.15 16 43 H 0.11 1.56 7.18 -2.39 -0.02 1.54 16 44 H 0.09 2.04 8.07 -2.39 -0.02 2.02 16 45 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -77.98 367.40 -6.31 -84.29 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -0.76 Total: 8.10 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.21 Total: -30.50 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -6.87 Total: -99.56 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -4.42 Total: -45.73 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Atomic # 16 Polarization: 38.47 SS G_CDS: -0.35 Total: 38.11 kcal Total: -77.98 -6.31 -84.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076651217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.870 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds