Wall clock time and date at job start Tue Mar 31 2020 22:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00327 * 2 1 4 4 H 1.48493 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46846 * 300.00085 * 3 2 1 6 6 H 1.48504 * 109.47200 * 59.99449 * 3 2 1 7 7 C 1.37878 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99488 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00223 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47328 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00157 * 84.99691 * 10 9 7 12 12 C 1.50704 * 109.46848 * 83.44043 * 11 10 9 13 13 C 1.38220 * 119.61756 * 94.75537 * 12 11 10 14 14 C 1.38633 * 119.15972 * 180.02562 * 13 12 11 15 15 C 1.38672 * 118.42053 * 359.97438 * 14 13 12 16 16 C 1.38177 * 119.16190 * 0.27445 * 15 14 13 17 17 N 1.31854 * 119.61504 * 274.77715 * 12 11 10 18 18 S 1.65603 * 119.99832 * 265.00027 * 10 9 7 19 19 O 1.42096 * 106.40054 * 209.33895 * 18 10 9 20 20 O 1.42101 * 106.40052 * 342.26393 * 18 10 9 21 21 N 1.65599 * 107.21518 * 95.79990 * 18 10 9 22 22 C 1.46927 * 120.63533 * 263.68194 * 21 18 10 23 23 C 1.53622 * 108.54442 * 126.36947 * 22 21 18 24 24 C 1.53049 * 109.24113 * 54.86019 * 23 22 21 25 25 C 1.53045 * 109.53680 * 298.51150 * 24 23 22 26 26 C 1.46933 * 120.62755 * 83.96575 * 21 18 10 27 27 H 0.96998 * 120.00065 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47283 * 60.00067 * 9 7 2 29 29 H 1.08999 * 109.47247 * 299.99903 * 9 7 2 30 30 H 1.09003 * 109.47125 * 323.44338 * 11 10 9 31 31 H 1.08995 * 109.47358 * 203.44364 * 11 10 9 32 32 H 1.08000 * 120.42206 * 359.97438 * 13 12 11 33 33 H 1.07999 * 120.78450 * 179.97438 * 14 13 12 34 34 H 1.08003 * 120.41771 * 180.02562 * 15 14 13 35 35 H 1.08007 * 119.61581 * 179.70442 * 16 15 14 36 36 H 1.09003 * 109.58908 * 246.20719 * 22 21 18 37 37 H 1.08998 * 109.58109 * 6.63002 * 22 21 18 38 38 H 1.09003 * 109.63586 * 294.86780 * 23 22 21 39 39 H 1.08997 * 109.43329 * 174.72498 * 23 22 21 40 40 H 1.08998 * 109.45784 * 178.49223 * 24 23 22 41 41 H 1.09000 * 109.45938 * 58.53207 * 24 23 22 42 42 H 1.09003 * 109.49181 * 301.41487 * 25 24 23 43 43 H 1.09002 * 109.49594 * 181.31577 * 25 24 23 44 44 H 1.08998 * 109.58631 * 353.37048 * 26 21 18 45 45 H 1.09001 * 109.58563 * 113.80075 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 2.7630 -4.0965 1.2670 12 6 1.8002 -5.0645 1.9052 13 6 1.9532 -6.4214 1.6908 14 6 1.0618 -7.3033 2.2821 15 6 0.0457 -6.7851 3.0707 16 6 -0.0474 -5.4163 3.2352 17 7 0.8215 -4.6071 2.6611 18 16 2.6459 -4.3246 -1.4254 19 8 2.9556 -5.6774 -1.1203 20 8 1.6651 -3.9485 -2.3824 21 7 4.0639 -3.6173 -1.9064 22 6 4.0584 -2.5094 -2.8714 23 6 4.8341 -1.3299 -2.2657 24 6 6.2322 -1.8015 -1.8588 25 6 6.1139 -2.8964 -0.7961 26 6 5.3521 -4.0899 -1.3809 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 2.9283 -3.2532 1.9375 31 1 3.7108 -4.5996 1.0757 32 1 2.7564 -6.7899 1.0700 33 1 1.1565 -8.3686 2.1319 34 1 -0.6664 -7.4428 3.5470 35 1 -0.8388 -5.0045 3.8440 36 1 4.5374 -2.8286 -3.7971 37 1 3.0310 -2.2071 -3.0746 38 1 4.3064 -0.9565 -1.3881 39 1 4.9197 -0.5340 -3.0054 40 1 6.7951 -0.9609 -1.4531 41 1 6.7503 -2.1976 -2.7322 42 1 5.5741 -2.5082 0.0676 43 1 7.1102 -3.2153 -0.4899 44 1 5.1787 -4.8307 -0.6004 45 1 5.9345 -4.5353 -2.1875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078760071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:59 Heat of formation + Delta-G solvation = -64.224361 kcal Electronic energy + Delta-G solvation = -29494.136522 eV Core-core repulsion = 25637.194630 eV Total energy + Delta-G solvation = -3856.941892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05402 -39.21074 -38.36770 -37.37375 -36.88541 -34.64697 -33.29716 -33.24914 -32.46244 -31.88423 -29.29685 -27.04396 -25.35220 -24.57171 -24.24239 -24.03235 -22.83244 -21.26465 -19.77524 -18.90569 -18.60344 -18.24110 -17.70428 -17.24666 -16.98058 -16.49184 -16.31534 -15.83531 -15.49756 -15.29910 -15.17384 -14.78012 -14.48607 -14.47254 -14.38127 -14.20210 -14.02478 -13.77533 -13.47229 -13.33493 -13.02360 -12.93565 -12.90912 -12.83607 -12.67489 -12.49522 -12.40898 -12.10697 -11.90355 -11.85330 -11.51269 -11.38491 -11.20098 -10.75951 -10.55304 -10.38178 -9.96610 -9.89932 -9.65941 -8.11459 -6.23320 -0.36446 0.22545 0.45431 1.42086 1.43028 1.54442 1.97017 2.44463 2.53129 2.97094 3.20928 3.37825 3.44312 3.71655 3.85353 4.03742 4.07493 4.10062 4.13736 4.30734 4.32315 4.34197 4.43148 4.52986 4.58901 4.67264 4.75968 4.86644 4.88945 4.90851 4.99240 5.01409 5.10818 5.26892 5.30830 5.31452 5.33212 5.37594 5.45450 5.51305 5.61571 5.72184 5.85264 5.86445 5.97619 6.18462 6.89298 7.19093 7.45291 8.97888 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.006108 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.299115 B = 4583.144667 C = 6300.179124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.250 1.250 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.080 0.920 9 C 0.268 3.732 10 N -0.986 5.986 11 C 0.181 3.819 12 C 0.086 3.914 13 C -0.165 4.165 14 C -0.083 4.083 15 C -0.166 4.166 16 C 0.074 3.926 17 N -0.503 5.503 18 S 2.790 3.210 19 O -0.993 6.993 20 O -1.019 7.019 21 N -0.999 5.999 22 C 0.125 3.875 23 C -0.143 4.143 24 C -0.108 4.108 25 C -0.134 4.134 26 C 0.117 3.883 27 H 0.261 0.739 28 H 0.006 0.994 29 H 0.020 0.980 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.430 -11.428 1.807 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.173 1.173 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.566 4.566 8 H 0.098 0.902 9 C 0.144 3.856 10 N -0.825 5.825 11 C 0.055 3.945 12 C -0.053 4.053 13 C -0.185 4.185 14 C -0.109 4.109 15 C -0.186 4.186 16 C -0.084 4.084 17 N -0.213 5.213 18 S 2.801 3.199 19 O -0.976 6.976 20 O -1.003 7.003 21 N -0.841 5.841 22 C 0.000 4.000 23 C -0.182 4.182 24 C -0.145 4.145 25 C -0.172 4.172 26 C -0.008 4.008 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.186 0.814 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.743 -11.104 1.453 16.227 hybrid contribution -0.350 0.736 0.097 0.821 sum 11.392 -10.368 1.550 15.482 Atomic orbital electron populations 1.70107 1.07868 1.27544 1.51777 1.25796 0.95436 1.02747 0.95008 0.85583 0.79931 0.79433 0.77240 1.17307 1.20987 1.21256 1.21888 0.94154 0.90735 1.49836 0.90199 1.18645 0.87457 0.83125 0.96378 1.57645 1.57251 1.47757 1.19836 1.20023 0.93106 0.95904 0.85496 1.21884 0.95060 0.93635 0.94743 1.22366 1.02108 0.93548 1.00491 1.22022 0.93069 1.01688 0.94099 1.22512 0.99801 0.96443 0.99815 1.23238 0.96817 0.91332 0.96971 1.67510 1.03679 1.41809 1.08312 1.01456 0.72835 0.73059 0.72583 1.93498 1.85296 1.33605 1.85247 1.93512 1.60336 1.84677 1.61807 1.57965 1.21318 1.48382 1.56389 1.21483 1.01055 0.86217 0.91269 1.22089 0.97297 0.97237 1.01603 1.21416 0.95288 0.98497 0.99326 1.21933 1.01211 0.95671 0.98420 1.21668 0.83129 0.96570 0.99389 0.92961 0.97640 0.96143 0.89664 0.87277 0.83284 0.81529 0.81260 0.81424 0.89228 0.92140 0.92627 0.90414 0.91403 0.90244 0.92795 0.88208 0.89536 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 2 C 0.01 0.48 5.46 84.66 0.46 0.95 16 3 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -28.10 9.30 25.60 0.24 -27.86 16 8 H 0.08 3.95 5.85 -2.91 -0.02 3.94 16 9 C 0.27 14.29 5.40 85.63 0.46 14.75 16 10 N -0.99 -42.15 2.81 -523.90 -1.47 -43.62 16 11 C 0.18 6.55 5.67 85.63 0.49 7.04 16 12 C 0.09 3.11 6.35 42.55 0.27 3.38 16 13 C -0.16 -4.98 9.28 22.36 0.21 -4.78 16 14 C -0.08 -2.00 10.18 22.47 0.23 -1.77 16 15 C -0.17 -3.88 10.11 22.36 0.23 -3.65 16 16 C 0.07 2.22 11.18 84.67 0.95 3.17 16 17 N -0.50 -19.38 10.13 -183.88 -1.86 -21.25 16 18 S 2.79 112.18 6.01 -56.49 -0.34 111.84 16 19 O -0.99 -37.58 14.81 -128.00 -1.90 -39.47 16 20 O -1.02 -50.39 15.13 -128.00 -1.94 -52.32 16 21 N -1.00 -31.79 3.34 -512.27 -1.71 -33.50 16 22 C 0.12 3.93 6.44 86.51 0.56 4.49 16 23 C -0.14 -4.13 6.10 30.82 0.19 -3.94 16 24 C -0.11 -2.29 5.88 30.63 0.18 -2.11 16 25 C -0.13 -2.77 6.08 30.67 0.19 -2.59 16 26 C 0.12 2.69 6.35 86.36 0.55 3.24 16 27 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.01 0.34 6.88 -2.39 -0.02 0.32 16 29 H 0.02 1.20 7.96 -2.39 -0.02 1.18 16 30 H 0.08 3.24 8.12 -2.39 -0.02 3.23 16 31 H 0.11 3.09 7.01 -2.39 -0.02 3.08 16 32 H 0.15 4.22 7.11 -2.91 -0.02 4.20 16 33 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.17 4.20 8.06 -2.91 -0.02 4.17 16 36 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 2.34 6.96 -2.39 -0.02 2.32 16 38 H 0.06 2.00 6.07 -2.39 -0.01 1.99 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.09 1.87 6.70 -2.39 -0.02 1.85 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.20 372.30 -0.73 -75.94 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.99 Total: 23.17 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 5.19 Total: -9.70 kcal Atomic # 7 Polarization: -149.70 SS G_CDS: -4.76 Total: -154.46 kcal Atomic # 8 Polarization: -87.96 SS G_CDS: -3.83 Total: -91.80 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 112.18 SS G_CDS: -0.34 Total: 111.84 kcal Total: -75.20 -0.73 -75.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078760071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.715 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds