Wall clock time and date at job start Tue Mar 31 2020 22:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86796 * 119.99883 * 2 1 4 4 H 1.48497 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47305 * 299.99732 * 3 2 1 6 6 H 1.48499 * 109.47010 * 59.99647 * 3 2 1 7 7 C 1.39938 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99862 * 197.89473 * 7 2 1 9 9 C 1.41440 * 119.99903 * 17.89920 * 7 2 1 10 10 C 1.40786 * 120.17898 * 204.43150 * 9 7 2 11 11 C 1.37702 * 120.04092 * 180.02562 * 10 9 7 12 12 C 1.38380 * 120.41393 * 359.69914 * 11 10 9 13 13 C 1.39876 * 120.35490 * 0.55967 * 12 11 10 14 14 C 1.47886 * 120.02610 * 179.74011 * 13 12 11 15 15 O 1.21551 * 120.00344 * 179.72370 * 14 13 12 16 16 N 1.34774 * 119.99757 * 359.72464 * 14 13 12 17 17 C 1.46497 * 119.99988 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47322 * 180.02562 * 17 16 14 19 19 N 1.46505 * 109.47049 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99503 * 180.27579 * 19 18 17 21 21 O 1.21551 * 120.00051 * 359.72006 * 20 19 18 22 22 C 1.47839 * 119.99501 * 179.72209 * 20 19 18 23 23 C 1.40027 * 120.55417 * 179.72310 * 22 20 19 24 24 C 1.38365 * 118.28378 * 179.73320 * 23 22 20 25 25 C 1.38353 * 119.30279 * 0.56326 * 24 23 22 26 26 N 1.31925 * 121.07740 * 359.69347 * 25 24 23 27 27 C 1.31686 * 121.88452 * 0.02562 * 26 25 24 28 28 C 1.39041 * 119.95158 * 359.46697 * 13 12 11 29 29 H 0.96996 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.97271 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.79643 * 179.97438 * 11 10 9 32 32 H 1.07993 * 119.82192 * 180.27724 * 12 11 10 33 33 H 0.97001 * 120.00463 * 359.97438 * 16 14 13 34 34 H 1.09004 * 109.47236 * 60.00305 * 17 16 14 35 35 H 1.08995 * 109.47598 * 300.00240 * 17 16 14 36 36 H 1.08996 * 109.47071 * 59.99709 * 18 17 16 37 37 H 1.09003 * 109.46815 * 300.00215 * 18 17 16 38 38 H 0.96991 * 119.99767 * 359.97438 * 19 18 17 39 39 H 1.07993 * 120.85748 * 0.02562 * 23 22 20 40 40 H 1.07995 * 120.34629 * 180.25641 * 24 23 22 41 41 H 1.08000 * 119.45630 * 179.72337 * 25 24 23 42 42 H 1.07999 * 119.72208 * 179.97438 * 27 26 25 43 43 H 1.07992 * 120.20107 * 180.23013 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2879 9 6 1.3522 -2.4073 -0.3754 10 6 1.8264 -3.6500 0.0861 11 6 1.1860 -4.8121 -0.2821 12 6 0.0712 -4.7685 -1.1008 13 6 -0.4112 -3.5436 -1.5734 14 6 -1.5997 -3.5059 -2.4526 15 8 -2.0216 -2.4408 -2.8590 16 7 -2.2152 -4.6525 -2.8032 17 6 -3.3929 -4.6152 -3.6737 18 6 -3.8944 -6.0405 -3.9147 19 7 -5.0718 -6.0031 -4.7857 20 6 -5.6908 -7.1493 -5.1315 21 8 -5.2691 -8.2144 -4.7248 22 6 -6.8826 -7.1112 -6.0054 23 6 -7.5313 -8.2953 -6.3766 24 6 -8.6458 -8.2046 -7.1916 25 6 -9.0724 -6.9598 -7.6192 26 7 -8.4379 -5.8612 -7.2576 27 6 -7.3763 -5.8953 -6.4792 28 6 0.2241 -2.3610 -1.2114 29 1 -0.4850 0.8400 -0.0004 30 1 2.6930 -3.6917 0.7292 31 1 1.5535 -5.7633 0.0738 32 1 -0.4262 -5.6854 -1.3800 33 1 -1.8783 -5.5025 -2.4792 34 1 -3.1262 -4.1575 -4.6264 35 1 -4.1789 -4.0297 -3.1968 36 1 -4.1611 -6.4978 -2.9619 37 1 -3.1085 -6.6263 -4.3915 38 1 -5.4084 -5.1532 -5.1099 39 1 -7.1739 -9.2542 -6.0318 40 1 -9.1741 -9.0963 -7.4948 41 1 -9.9394 -6.8865 -8.2590 42 1 -6.8835 -4.9742 -6.2051 43 1 -0.1472 -1.4128 -1.5710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078908272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:07 Heat of formation + Delta-G solvation = -18.302778 kcal Electronic energy + Delta-G solvation = -26576.168008 eV Core-core repulsion = 22585.773474 eV Total energy + Delta-G solvation = -3990.394534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04232 -39.55226 -39.14216 -37.13151 -35.93265 -34.08383 -33.68812 -33.02482 -32.08220 -30.48057 -29.48356 -28.66913 -25.45176 -25.04656 -24.08660 -23.19565 -22.04006 -21.16661 -20.93086 -19.62304 -18.65303 -17.79215 -17.35217 -16.88068 -16.17238 -16.14235 -15.96208 -15.40102 -15.09823 -15.04438 -14.96283 -14.64250 -14.20164 -13.93281 -13.73011 -13.60562 -13.52738 -13.20365 -12.75350 -12.68214 -12.52934 -11.99744 -11.96686 -11.65401 -11.18962 -11.10357 -10.76965 -10.71532 -10.51451 -10.45491 -10.07900 -9.94470 -9.80129 -9.72365 -9.48408 -9.25123 -9.12652 -8.82534 -7.67528 -7.55419 -6.83391 -4.44334 0.12547 0.68180 2.15099 2.42355 2.52220 2.77791 3.06354 3.10920 3.12788 3.35884 3.67551 3.77372 3.79987 3.89844 4.21841 4.27480 4.36751 4.44610 4.56569 4.59685 4.86001 4.88413 5.04585 5.23548 5.48325 5.51518 5.56522 5.58106 5.71270 5.78120 5.94995 6.01857 6.05688 6.24149 6.68318 6.68791 6.94784 6.97448 6.99500 7.17828 7.31704 7.34387 7.65311 7.70609 7.72298 7.87937 8.00734 8.14663 8.47225 8.76722 8.79642 8.84857 10.11372 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.001752 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.454492 B =15973.877292 C =17131.463725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.218 4.218 13 C -0.129 4.129 14 C 0.567 3.433 15 O -0.544 6.544 16 N -0.735 5.735 17 C 0.111 3.889 18 C 0.109 3.891 19 N -0.719 5.719 20 C 0.565 3.435 21 O -0.531 6.531 22 C -0.187 4.187 23 C -0.016 4.016 24 C -0.179 4.179 25 C 0.121 3.879 26 N -0.487 5.487 27 C 0.136 3.864 28 C -0.092 4.092 29 H 0.284 0.716 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.403 0.597 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.185 -12.602 -12.222 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.132 4.132 14 C 0.358 3.642 15 O -0.422 6.422 16 N -0.391 5.391 17 C -0.014 4.014 18 C -0.015 4.015 19 N -0.372 5.372 20 C 0.351 3.649 21 O -0.408 6.408 22 C -0.192 4.192 23 C -0.043 4.043 24 C -0.199 4.199 25 C -0.035 4.035 26 N -0.195 5.195 27 C -0.023 4.023 28 C -0.112 4.112 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.238 0.762 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.239 0.761 39 H 0.166 0.834 40 H 0.162 0.838 41 H 0.180 0.820 42 H 0.177 0.823 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.688 -11.610 -12.496 23.175 hybrid contribution 0.539 -0.136 0.379 0.673 sum -15.149 -11.746 -12.117 22.678 Atomic orbital electron populations 1.69797 1.07595 1.29712 1.33622 1.25975 0.94775 1.01599 0.92278 0.86231 0.80904 0.80779 0.78697 1.18312 1.19540 1.19908 1.19629 0.98276 0.91027 1.39828 0.89994 1.17612 0.91188 0.92495 0.89185 1.21112 1.03509 0.92748 1.05685 1.20442 0.95966 0.96775 0.98371 1.20343 1.01300 0.94595 1.07595 1.19426 0.96511 0.95400 1.01873 1.18847 0.83237 0.82565 0.79536 1.90705 1.66212 1.29820 1.55421 1.45745 1.30630 1.10224 1.52452 1.21277 0.89291 0.95053 0.95806 1.21532 0.87522 0.97361 0.95106 1.45693 1.30867 1.09157 1.51483 1.17994 0.82736 0.83940 0.80210 1.90808 1.65744 1.29515 1.54734 1.20988 0.99112 0.95862 1.03255 1.21781 0.92103 0.98620 0.91750 1.22215 0.97975 0.99925 0.99810 1.23071 0.97568 0.87751 0.95105 1.67730 1.07767 1.32065 1.11945 1.23039 0.91499 0.96666 0.91070 1.21639 0.96470 0.96416 0.96683 0.90467 0.88568 0.88830 0.89168 0.76211 0.91055 0.91033 0.90265 0.90278 0.76108 0.83367 0.83814 0.82044 0.82269 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.48 10.96 55.55 0.61 -19.88 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.55 29.59 -169.99 -5.03 13.52 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.10 2.55 5.57 -106.87 -0.60 1.95 16 10 C -0.21 -4.93 9.78 -38.81 -0.38 -5.31 16 11 C -0.10 -2.04 10.01 -39.73 -0.40 -2.43 16 12 C -0.22 -4.46 9.55 -38.92 -0.37 -4.84 16 13 C -0.13 -2.96 5.87 -105.04 -0.62 -3.58 16 14 C 0.57 11.88 7.77 -12.31 -0.10 11.78 16 15 O -0.54 -13.10 16.33 5.32 0.09 -13.01 16 16 N -0.74 -11.21 5.51 -61.24 -0.34 -11.55 16 17 C 0.11 1.32 5.79 -4.04 -0.02 1.29 16 18 C 0.11 1.06 5.79 -4.04 -0.02 1.04 16 19 N -0.72 -6.14 5.51 -61.25 -0.34 -6.48 16 20 C 0.57 5.80 7.78 -12.33 -0.10 5.71 16 21 O -0.53 -7.26 16.42 5.32 0.09 -7.17 16 22 C -0.19 -1.58 5.89 -104.82 -0.62 -2.19 16 23 C -0.02 -0.12 9.72 -38.86 -0.38 -0.50 16 24 C -0.18 -0.96 10.10 -39.49 -0.40 -1.36 16 25 C 0.12 0.74 11.17 -17.47 -0.20 0.54 16 26 N -0.49 -4.04 10.35 -12.91 -0.13 -4.18 16 27 C 0.14 1.03 10.71 -17.14 -0.18 0.85 16 28 C -0.09 -2.41 8.24 -38.44 -0.32 -2.73 16 29 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 30 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.09 1.50 6.38 -52.49 -0.33 1.17 16 33 H 0.40 5.30 6.49 -40.82 -0.26 5.04 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 2.46 6.54 -40.82 -0.27 2.19 16 39 H 0.15 1.03 7.74 -52.49 -0.41 0.62 16 40 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 41 H 0.16 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.16 0.82 6.42 -52.49 -0.34 0.49 16 43 H 0.13 3.80 5.74 -52.49 -0.30 3.49 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -33.32 374.22 -9.38 -42.70 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.84 Total: 10.69 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -5.12 Total: -10.29 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.20 Total: -42.08 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.17 Total: -20.18 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.32 -9.38 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078908272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.397 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds