Wall clock time and date at job start Tue Mar 31 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86796 * 119.99883 * 2 1 4 4 H 1.48497 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47305 * 299.99732 * 3 2 1 6 6 H 1.48499 * 109.47010 * 59.99647 * 3 2 1 7 7 C 1.39938 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99862 * 197.89473 * 7 2 1 9 9 C 1.41440 * 119.99903 * 17.89920 * 7 2 1 10 10 C 1.40786 * 120.17898 * 204.43150 * 9 7 2 11 11 C 1.37702 * 120.04092 * 180.02562 * 10 9 7 12 12 C 1.38380 * 120.41393 * 359.69914 * 11 10 9 13 13 C 1.39876 * 120.35490 * 0.55967 * 12 11 10 14 14 C 1.47886 * 120.02610 * 179.74011 * 13 12 11 15 15 O 1.21551 * 120.00344 * 179.72370 * 14 13 12 16 16 N 1.34774 * 119.99757 * 359.72464 * 14 13 12 17 17 C 1.46497 * 119.99988 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47322 * 180.02562 * 17 16 14 19 19 N 1.46505 * 109.47049 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99503 * 180.27579 * 19 18 17 21 21 O 1.21551 * 120.00051 * 359.72006 * 20 19 18 22 22 C 1.47839 * 119.99501 * 179.72209 * 20 19 18 23 23 C 1.40027 * 120.55417 * 179.72310 * 22 20 19 24 24 C 1.38365 * 118.28378 * 179.73320 * 23 22 20 25 25 C 1.38353 * 119.30279 * 0.56326 * 24 23 22 26 26 N 1.31925 * 121.07740 * 359.69347 * 25 24 23 27 27 C 1.31686 * 121.88452 * 0.02562 * 26 25 24 28 28 C 1.39041 * 119.95158 * 359.46697 * 13 12 11 29 29 H 0.96996 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.97271 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.79643 * 179.97438 * 11 10 9 32 32 H 1.07993 * 119.82192 * 180.27724 * 12 11 10 33 33 H 0.97001 * 120.00463 * 359.97438 * 16 14 13 34 34 H 1.09004 * 109.47236 * 60.00305 * 17 16 14 35 35 H 1.08995 * 109.47598 * 300.00240 * 17 16 14 36 36 H 1.08996 * 109.47071 * 59.99709 * 18 17 16 37 37 H 1.09003 * 109.46815 * 300.00215 * 18 17 16 38 38 H 0.96991 * 119.99767 * 359.97438 * 19 18 17 39 39 H 1.07993 * 120.85748 * 0.02562 * 23 22 20 40 40 H 1.07995 * 120.34629 * 180.25641 * 24 23 22 41 41 H 1.08000 * 119.45630 * 179.72337 * 25 24 23 42 42 H 1.07999 * 119.72208 * 179.97438 * 27 26 25 43 43 H 1.07992 * 120.20107 * 180.23013 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2879 9 6 1.3522 -2.4073 -0.3754 10 6 1.8264 -3.6500 0.0861 11 6 1.1860 -4.8121 -0.2821 12 6 0.0712 -4.7685 -1.1008 13 6 -0.4112 -3.5436 -1.5734 14 6 -1.5997 -3.5059 -2.4526 15 8 -2.0216 -2.4408 -2.8590 16 7 -2.2152 -4.6525 -2.8032 17 6 -3.3929 -4.6152 -3.6737 18 6 -3.8944 -6.0405 -3.9147 19 7 -5.0718 -6.0031 -4.7857 20 6 -5.6908 -7.1493 -5.1315 21 8 -5.2691 -8.2144 -4.7248 22 6 -6.8826 -7.1112 -6.0054 23 6 -7.5313 -8.2953 -6.3766 24 6 -8.6458 -8.2046 -7.1916 25 6 -9.0724 -6.9598 -7.6192 26 7 -8.4379 -5.8612 -7.2576 27 6 -7.3763 -5.8953 -6.4792 28 6 0.2241 -2.3610 -1.2114 29 1 -0.4850 0.8400 -0.0004 30 1 2.6930 -3.6917 0.7292 31 1 1.5535 -5.7633 0.0738 32 1 -0.4262 -5.6854 -1.3800 33 1 -1.8783 -5.5025 -2.4792 34 1 -3.1262 -4.1575 -4.6264 35 1 -4.1789 -4.0297 -3.1968 36 1 -4.1611 -6.4978 -2.9619 37 1 -3.1085 -6.6263 -4.3915 38 1 -5.4084 -5.1532 -5.1099 39 1 -7.1739 -9.2542 -6.0318 40 1 -9.1741 -9.0963 -7.4948 41 1 -9.9394 -6.8865 -8.2590 42 1 -6.8835 -4.9742 -6.2051 43 1 -0.1472 -1.4128 -1.5710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078908272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:06 Heat of formation + Delta-G solvation = -41.618393 kcal Electronic energy + Delta-G solvation = -26577.179049 eV Core-core repulsion = 22585.773474 eV Total energy + Delta-G solvation = -3991.405575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67212 -40.93546 -40.07654 -38.85561 -37.03295 -35.65376 -35.12762 -33.58060 -32.77721 -32.06648 -31.27981 -29.79781 -27.21272 -25.90303 -24.72708 -24.27412 -23.32999 -22.72719 -21.94614 -21.18721 -19.64411 -19.20763 -17.98529 -17.92847 -17.43634 -17.13662 -17.06037 -16.73056 -16.39719 -16.23861 -16.09802 -15.75689 -15.31917 -15.13143 -15.00142 -14.55546 -14.54663 -14.38673 -14.26038 -14.13811 -13.49485 -13.23179 -13.05615 -12.91606 -12.89164 -12.77799 -12.53195 -12.17339 -11.90955 -11.50989 -11.49311 -11.07916 -11.01029 -10.84787 -10.51418 -10.43762 -10.23235 -10.13130 -9.47640 -9.38207 -8.66891 -6.37908 -0.42718 0.18180 0.37096 1.00696 1.37035 1.46758 1.53047 1.64797 1.72040 2.08499 2.19512 2.48866 2.78307 2.81253 3.26699 3.56102 3.67451 3.69947 3.77899 3.91828 3.98255 4.01351 4.04428 4.33561 4.42035 4.44197 4.60148 4.64656 4.77555 4.78774 4.91754 4.97793 5.08962 5.09375 5.13981 5.19387 5.31252 5.38879 5.52234 5.55673 5.86140 5.92723 6.05651 6.28057 6.29615 6.48369 6.65648 6.81658 6.88287 6.94517 6.98221 7.26354 8.30161 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.001752 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.454492 B =15973.877292 C =17131.463725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.497 4.497 8 H 0.083 0.917 9 C 0.066 3.934 10 C -0.217 4.217 11 C -0.097 4.097 12 C -0.197 4.197 13 C -0.140 4.140 14 C 0.565 3.435 15 O -0.584 6.584 16 N -0.712 5.712 17 C 0.113 3.887 18 C 0.121 3.879 19 N -0.710 5.710 20 C 0.567 3.433 21 O -0.570 6.570 22 C -0.202 4.202 23 C -0.028 4.028 24 C -0.170 4.170 25 C 0.119 3.881 26 N -0.513 5.513 27 C 0.133 3.867 28 C -0.130 4.130 29 H 0.287 0.713 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.415 0.585 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.415 0.585 39 H 0.148 0.852 40 H 0.176 0.824 41 H 0.191 0.809 42 H 0.176 0.824 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.095 -14.761 -13.079 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.189 1.189 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.063 3.937 10 C -0.237 4.237 11 C -0.115 4.115 12 C -0.217 4.217 13 C -0.143 4.143 14 C 0.355 3.645 15 O -0.465 6.465 16 N -0.366 5.366 17 C -0.011 4.011 18 C -0.004 4.004 19 N -0.363 5.363 20 C 0.354 3.646 21 O -0.450 6.450 22 C -0.208 4.208 23 C -0.055 4.055 24 C -0.189 4.189 25 C -0.037 4.037 26 N -0.221 5.221 27 C -0.025 4.025 28 C -0.151 4.151 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.253 0.747 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.253 0.747 39 H 0.165 0.835 40 H 0.193 0.807 41 H 0.208 0.792 42 H 0.193 0.807 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.611 -13.810 -13.362 25.400 hybrid contribution 0.703 0.285 0.570 0.949 sum -15.908 -13.525 -12.792 24.487 Atomic orbital electron populations 1.69890 1.09200 1.30567 1.35371 1.26843 0.95420 1.04922 0.91345 0.85158 0.79659 0.76146 0.78780 1.17509 1.19485 1.18909 1.19886 0.98589 0.92238 1.41917 0.89879 1.17961 0.91865 0.93899 0.89946 1.21417 1.03921 0.92827 1.05517 1.20932 0.95400 0.97684 0.97439 1.20877 1.00421 0.95204 1.05160 1.19760 0.97068 0.95500 1.01982 1.18635 0.83077 0.83388 0.79409 1.90684 1.67232 1.31663 1.56967 1.45487 1.30610 1.09015 1.51504 1.21393 0.87893 0.96637 0.95184 1.21335 0.88002 0.95530 0.95503 1.45583 1.30266 1.09565 1.50868 1.18262 0.82938 0.83507 0.79864 1.90782 1.66984 1.30837 1.56430 1.20906 0.99019 0.96805 1.04045 1.21974 0.92865 0.98338 0.92286 1.22528 0.97010 1.00966 0.98409 1.23640 0.97893 0.87446 0.94681 1.67782 1.08335 1.33329 1.12689 1.23266 0.91488 0.96987 0.90804 1.21448 0.98240 0.96482 0.98938 0.90274 0.87444 0.84418 0.84398 0.74651 0.90705 0.90983 0.90142 0.89966 0.74656 0.83458 0.80689 0.79177 0.80715 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.66 10.96 21.83 0.24 -45.42 16 2 C 0.03 1.54 5.14 85.25 0.44 1.98 16 3 Si 0.98 39.43 29.59 68.60 2.03 41.46 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -26.97 9.05 23.47 0.21 -26.76 16 8 H 0.08 4.27 7.91 -2.91 -0.02 4.25 16 9 C 0.07 3.54 5.57 -21.32 -0.12 3.42 16 10 C -0.22 -10.05 9.78 22.77 0.22 -9.83 16 11 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 12 C -0.20 -7.50 9.55 22.70 0.22 -7.28 16 13 C -0.14 -6.43 5.87 -20.13 -0.12 -6.55 16 14 C 0.57 23.57 7.77 86.80 0.67 24.25 16 15 O -0.58 -28.95 16.33 -3.88 -0.06 -29.02 16 16 N -0.71 -20.35 5.51 -465.93 -2.57 -22.92 16 17 C 0.11 2.50 5.79 86.38 0.50 3.00 16 18 C 0.12 2.11 5.79 86.38 0.50 2.61 16 19 N -0.71 -11.09 5.51 -465.96 -2.57 -13.66 16 20 C 0.57 11.13 7.78 86.78 0.68 11.81 16 21 O -0.57 -15.26 16.42 -3.88 -0.06 -15.32 16 22 C -0.20 -3.22 5.89 -19.99 -0.12 -3.34 16 23 C -0.03 -0.38 9.72 22.73 0.22 -0.16 16 24 C -0.17 -1.42 10.10 22.33 0.23 -1.19 16 25 C 0.12 1.16 11.17 84.71 0.95 2.11 16 26 N -0.51 -7.69 10.35 -194.76 -2.01 -9.71 16 27 C 0.13 1.85 10.71 85.02 0.91 2.76 16 28 C -0.13 -7.15 8.24 23.01 0.19 -6.96 16 29 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 30 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 32 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 33 H 0.42 9.55 6.49 -92.71 -0.60 8.95 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.42 4.43 6.54 -92.71 -0.61 3.83 16 39 H 0.15 1.95 7.74 -2.91 -0.02 1.92 16 40 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 41 H 0.19 0.59 8.06 -2.91 -0.02 0.56 16 42 H 0.18 1.59 6.42 -2.91 -0.02 1.57 16 43 H 0.10 6.09 5.74 -2.91 -0.02 6.08 16 Total: -1.00 -77.25 374.22 0.67 -76.58 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.13 Total: 31.66 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 5.80 Total: -13.66 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -6.91 Total: -91.70 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.13 Total: -44.34 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -77.25 0.67 -76.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078908272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.960 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds