Wall clock time and date at job start Tue Mar 31 2020 22:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48496 * 109.47090 * 270.00350 * 3 2 1 5 5 H 1.48500 * 109.46702 * 30.00378 * 3 2 1 6 6 H 1.48496 * 109.46971 * 150.00114 * 3 2 1 7 7 C 1.38651 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08012 * 120.00111 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00644 * 185.02387 * 9 7 2 11 11 C 1.38910 * 120.06589 * 354.45893 * 10 9 7 12 12 C 1.38074 * 119.93105 * 179.68004 * 11 10 9 13 13 C 1.38328 * 120.06640 * 0.61903 * 12 11 10 14 14 C 1.38278 * 120.14038 * 359.67685 * 13 12 11 15 15 C 1.50697 * 119.96391 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47533 * 269.97799 * 15 14 13 17 17 O 1.21288 * 119.99598 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00175 * 179.97438 * 16 15 14 19 19 C 1.39970 * 120.00090 * 185.68472 * 18 16 15 20 20 C 1.39237 * 120.87155 * 205.43036 * 19 18 16 21 21 N 1.32259 * 119.01559 * 179.76358 * 20 19 18 22 22 C 1.31794 * 120.89518 * 0.51969 * 21 20 19 23 23 C 1.50703 * 119.04287 * 179.70466 * 22 21 20 24 24 C 1.53000 * 117.49509 * 8.64429 * 23 22 21 25 25 C 1.53004 * 117.49635 * 300.02265 * 23 22 21 26 26 N 1.31794 * 121.92121 * 359.73094 * 22 21 20 27 27 C 1.32262 * 120.89408 * 359.97438 * 26 22 21 28 28 C 1.38119 * 120.06886 * 0.02562 * 14 13 12 29 29 H 0.97002 * 120.00139 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.03100 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.97139 * 180.32192 * 12 11 10 32 32 H 1.08007 * 119.93040 * 179.69992 * 13 12 11 33 33 H 1.09004 * 109.47344 * 29.98607 * 15 14 13 34 34 H 1.09011 * 109.46654 * 149.98164 * 15 14 13 35 35 H 0.97005 * 119.99716 * 5.68902 * 18 16 15 36 36 H 1.08001 * 120.49198 * 359.97438 * 20 19 18 37 37 H 1.08998 * 115.55230 * 154.35170 * 23 22 21 38 38 H 1.09001 * 117.49943 * 359.97438 * 24 23 22 39 39 H 1.09005 * 117.49772 * 145.02212 * 24 23 22 40 40 H 1.09001 * 117.49654 * 214.97471 * 25 23 22 41 41 H 1.08995 * 117.50104 * 359.97438 * 25 23 22 42 42 H 1.08001 * 120.49405 * 179.97438 * 27 26 22 43 43 H 1.07997 * 120.03892 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1048 11 6 3.4576 -3.4394 0.0906 12 6 4.2028 -4.5962 0.2046 13 6 3.5691 -5.8203 0.3200 14 6 2.1880 -5.8891 0.3284 15 6 1.5017 -7.2248 0.4550 16 6 1.2705 -7.8029 -0.9174 17 8 1.6283 -7.1907 -1.9014 18 7 0.6671 -9.0006 -1.0512 19 6 0.5587 -9.5923 -2.3151 20 6 -0.4569 -10.5034 -2.5927 21 7 -0.5276 -11.0369 -3.8008 22 6 0.3520 -10.7243 -4.7311 23 6 0.2360 -11.3622 -6.0916 24 6 -1.0197 -12.1873 -6.3801 25 6 0.3235 -12.8879 -6.1662 26 7 1.3306 -9.8706 -4.5063 27 6 1.4669 -9.2894 -3.3260 28 6 1.4370 -4.7350 0.2209 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4844 -0.0040 31 1 5.2817 -4.5458 0.1988 32 1 4.1542 -6.7243 0.4042 33 1 2.1294 -7.9024 1.0337 34 1 0.5447 -7.0950 0.9605 35 1 0.3078 -9.4524 -0.2717 36 1 -1.1783 -10.7680 -1.8337 37 1 0.6648 -10.7926 -6.9160 38 1 -1.7617 -12.2690 -5.5858 39 1 -1.4174 -12.1604 -7.3947 40 1 0.8095 -13.3220 -7.0400 41 1 0.4654 -13.4302 -5.2314 42 1 2.2714 -8.5910 -3.1487 43 1 0.3584 -4.7892 0.2279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089796603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:28 Heat of formation + Delta-G solvation = 44.948120 kcal Electronic energy + Delta-G solvation = -27113.420486 eV Core-core repulsion = 23125.768716 eV Total energy + Delta-G solvation = -3987.651769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63975 -40.06885 -38.89833 -37.35970 -36.55399 -35.28104 -33.89994 -32.55029 -32.15694 -30.51010 -29.21315 -27.30009 -25.45090 -25.16382 -24.65491 -22.63992 -22.07391 -21.64181 -21.14906 -20.47257 -18.53527 -17.81722 -17.54351 -17.29186 -16.88755 -16.59017 -15.62705 -15.51324 -15.08817 -14.86517 -14.46296 -14.36919 -14.29779 -14.22442 -13.83519 -13.54167 -13.49213 -12.72640 -12.51287 -12.46674 -12.07134 -11.87793 -11.68597 -11.63734 -11.54277 -11.29980 -11.05638 -10.85828 -10.83450 -10.78043 -10.66433 -10.65694 -10.45090 -10.09047 -9.40436 -9.35127 -8.84076 -8.55614 -8.12211 -7.24450 -6.44327 -4.03441 0.55818 0.85423 1.99169 2.35154 2.39471 2.72303 3.13654 3.13918 3.18810 3.27170 3.60120 3.74456 3.96792 3.99749 4.21371 4.37638 4.56767 4.58871 4.70174 4.73554 4.84391 4.94918 5.04714 5.09153 5.15311 5.34325 5.38511 5.49654 5.56258 5.57890 5.70279 5.76059 5.79971 5.88912 5.92226 6.14467 6.28175 6.30484 6.61114 6.75814 6.87757 6.96656 7.05420 7.20664 7.34560 7.42279 7.79198 7.84455 7.90945 8.00402 9.01347 9.71284 10.73768 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.002003 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.068084 B =13975.777109 C =14606.827205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.074 4.074 13 C -0.196 4.196 14 C -0.039 4.039 15 C -0.089 4.089 16 C 0.514 3.486 17 O -0.493 6.493 18 N -0.668 5.668 19 C 0.048 3.952 20 C 0.120 3.880 21 N -0.497 5.497 22 C 0.319 3.681 23 C -0.098 4.098 24 C -0.155 4.155 25 C -0.157 4.157 26 N -0.491 5.491 27 C 0.145 3.855 28 C -0.174 4.174 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.415 0.585 36 H 0.171 0.829 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.187 0.813 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 -24.236 -2.855 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.092 4.092 13 C -0.215 4.215 14 C -0.040 4.040 15 C -0.128 4.128 16 C 0.302 3.698 17 O -0.365 6.365 18 N -0.314 5.314 19 C -0.052 4.052 20 C -0.050 4.050 21 N -0.210 5.210 22 C 0.052 3.948 23 C -0.118 4.118 24 C -0.192 4.192 25 C -0.195 4.195 26 N -0.204 5.204 27 C -0.024 4.024 28 C -0.193 4.193 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.251 0.749 36 H 0.188 0.812 37 H 0.147 0.853 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.204 0.796 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.242 -23.896 -4.417 24.302 hybrid contribution 0.380 1.149 1.326 1.795 sum 0.622 -22.747 -3.091 22.964 Atomic orbital electron populations 1.70038 1.05951 1.27632 1.46209 1.25287 0.95851 0.98825 0.96590 0.85712 0.78897 0.80087 0.78734 1.19876 1.20267 1.19196 1.21320 0.91793 0.80806 1.52835 0.89078 1.83973 1.34258 1.11401 1.78551 1.19280 0.90266 0.87989 0.92428 1.21202 0.93826 0.99071 1.10604 1.20688 0.98452 0.92293 0.97808 1.20344 0.93187 0.96970 1.11035 1.18587 0.93257 0.91479 1.00668 1.20584 1.03184 0.96236 0.92842 1.21213 0.76477 0.79213 0.92913 1.90758 1.47413 1.58387 1.39917 1.43565 1.59617 1.20960 1.07298 1.19668 0.97834 0.98657 0.89039 1.22969 0.94330 0.93459 0.94227 1.68004 1.26513 1.25649 1.00812 1.22049 0.87260 0.91154 0.94384 1.20580 1.05374 0.93780 0.92078 1.23021 0.91199 1.01732 1.03292 1.22977 1.00894 0.92085 1.03582 1.68211 1.22040 1.08210 1.21926 1.23702 0.96579 0.95387 0.86755 1.19938 0.99052 0.89990 1.10332 0.92049 0.85552 0.87385 0.87854 0.87643 0.87642 0.74866 0.81235 0.85344 0.87255 0.88197 0.87983 0.88666 0.79624 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.39 -11.04 9.49 30.88 0.29 -10.75 16 8 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 9 O -0.18 -5.15 9.76 0.07 0.00 -5.14 16 10 C 0.15 3.76 6.65 -39.10 -0.26 3.50 16 11 C -0.23 -5.01 9.17 -39.39 -0.36 -5.38 16 12 C -0.07 -1.37 10.04 -39.61 -0.40 -1.77 16 13 C -0.20 -3.32 9.70 -39.53 -0.38 -3.70 16 14 C -0.04 -0.66 4.37 -104.65 -0.46 -1.12 16 15 C -0.09 -0.99 5.83 -29.03 -0.17 -1.16 16 16 C 0.51 6.41 7.64 -10.99 -0.08 6.33 16 17 O -0.49 -8.55 13.33 5.55 0.07 -8.48 16 18 N -0.67 -5.90 5.38 -9.68 -0.05 -5.96 16 19 C 0.05 0.53 6.46 -83.40 -0.54 -0.01 16 20 C 0.12 1.14 11.24 -17.00 -0.19 0.95 16 21 N -0.50 -5.63 9.33 -10.58 -0.10 -5.73 16 22 C 0.32 3.94 7.31 -157.19 -1.15 2.79 16 23 C -0.10 -0.95 6.23 -91.77 -0.57 -1.53 16 24 C -0.15 -1.19 10.01 -26.73 -0.27 -1.46 16 25 C -0.16 -1.18 10.23 -26.73 -0.27 -1.45 16 26 N -0.49 -6.84 10.32 -10.58 -0.11 -6.95 16 27 C 0.14 1.96 9.98 -17.00 -0.17 1.79 16 28 C -0.17 -3.64 9.65 -39.39 -0.38 -4.02 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 31 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.10 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.11 0.96 8.09 -51.92 -0.42 0.54 16 35 H 0.41 1.90 8.80 -40.82 -0.36 1.54 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.11 0.92 7.54 -51.93 -0.39 0.53 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.19 2.71 5.99 -52.49 -0.31 2.39 16 43 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -35.65 374.61 -9.25 -44.90 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.99 Total: 6.81 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -5.46 Total: -16.02 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.50 Total: -43.39 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.07 Total: -13.62 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.65 -9.25 -44.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089796603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.850 kcal (2) G-P(sol) polarization free energy of solvation -35.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds