Wall clock time and date at job start Tue Mar 31 2020 22:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48496 * 109.47090 * 270.00350 * 3 2 1 5 5 H 1.48500 * 109.46702 * 30.00378 * 3 2 1 6 6 H 1.48496 * 109.46971 * 150.00114 * 3 2 1 7 7 C 1.38651 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08012 * 120.00111 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00644 * 185.02387 * 9 7 2 11 11 C 1.38910 * 120.06589 * 354.45893 * 10 9 7 12 12 C 1.38074 * 119.93105 * 179.68004 * 11 10 9 13 13 C 1.38328 * 120.06640 * 0.61903 * 12 11 10 14 14 C 1.38278 * 120.14038 * 359.67685 * 13 12 11 15 15 C 1.50697 * 119.96391 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47533 * 269.97799 * 15 14 13 17 17 O 1.21288 * 119.99598 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00175 * 179.97438 * 16 15 14 19 19 C 1.39970 * 120.00090 * 185.68472 * 18 16 15 20 20 C 1.39237 * 120.87155 * 205.43036 * 19 18 16 21 21 N 1.32259 * 119.01559 * 179.76358 * 20 19 18 22 22 C 1.31794 * 120.89518 * 0.51969 * 21 20 19 23 23 C 1.50703 * 119.04287 * 179.70466 * 22 21 20 24 24 C 1.53000 * 117.49509 * 8.64429 * 23 22 21 25 25 C 1.53004 * 117.49635 * 300.02265 * 23 22 21 26 26 N 1.31794 * 121.92121 * 359.73094 * 22 21 20 27 27 C 1.32262 * 120.89408 * 359.97438 * 26 22 21 28 28 C 1.38119 * 120.06886 * 0.02562 * 14 13 12 29 29 H 0.97002 * 120.00139 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.03100 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.97139 * 180.32192 * 12 11 10 32 32 H 1.08007 * 119.93040 * 179.69992 * 13 12 11 33 33 H 1.09004 * 109.47344 * 29.98607 * 15 14 13 34 34 H 1.09011 * 109.46654 * 149.98164 * 15 14 13 35 35 H 0.97005 * 119.99716 * 5.68902 * 18 16 15 36 36 H 1.08001 * 120.49198 * 359.97438 * 20 19 18 37 37 H 1.08998 * 115.55230 * 154.35170 * 23 22 21 38 38 H 1.09001 * 117.49943 * 359.97438 * 24 23 22 39 39 H 1.09005 * 117.49772 * 145.02212 * 24 23 22 40 40 H 1.09001 * 117.49654 * 214.97471 * 25 23 22 41 41 H 1.08995 * 117.50104 * 359.97438 * 25 23 22 42 42 H 1.08001 * 120.49405 * 179.97438 * 27 26 22 43 43 H 1.07997 * 120.03892 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1048 11 6 3.4576 -3.4394 0.0906 12 6 4.2028 -4.5962 0.2046 13 6 3.5691 -5.8203 0.3200 14 6 2.1880 -5.8891 0.3284 15 6 1.5017 -7.2248 0.4550 16 6 1.2705 -7.8029 -0.9174 17 8 1.6283 -7.1907 -1.9014 18 7 0.6671 -9.0006 -1.0512 19 6 0.5587 -9.5923 -2.3151 20 6 -0.4569 -10.5034 -2.5927 21 7 -0.5276 -11.0369 -3.8008 22 6 0.3520 -10.7243 -4.7311 23 6 0.2360 -11.3622 -6.0916 24 6 -1.0197 -12.1873 -6.3801 25 6 0.3235 -12.8879 -6.1662 26 7 1.3306 -9.8706 -4.5063 27 6 1.4669 -9.2894 -3.3260 28 6 1.4370 -4.7350 0.2209 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4844 -0.0040 31 1 5.2817 -4.5458 0.1988 32 1 4.1542 -6.7243 0.4042 33 1 2.1294 -7.9024 1.0337 34 1 0.5447 -7.0950 0.9605 35 1 0.3078 -9.4524 -0.2717 36 1 -1.1783 -10.7680 -1.8337 37 1 0.6648 -10.7926 -6.9160 38 1 -1.7617 -12.2690 -5.5858 39 1 -1.4174 -12.1604 -7.3947 40 1 0.8095 -13.3220 -7.0400 41 1 0.4654 -13.4302 -5.2314 42 1 2.2714 -8.5910 -3.1487 43 1 0.3584 -4.7892 0.2279 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089796603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:28 Heat of formation + Delta-G solvation = 20.882447 kcal Electronic energy + Delta-G solvation = -27114.464052 eV Core-core repulsion = 23125.768716 eV Total energy + Delta-G solvation = -3988.695335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52146 -41.17663 -40.48466 -38.36490 -37.92870 -36.22003 -34.79033 -34.36056 -33.62924 -31.52191 -30.81162 -28.56456 -27.29116 -26.18321 -25.55683 -23.36063 -23.22377 -23.03834 -22.25022 -21.62665 -19.72835 -19.23033 -18.78306 -18.45701 -18.09785 -17.52021 -16.83347 -16.61406 -16.27241 -16.12623 -16.06411 -15.59304 -15.57219 -15.24671 -15.05688 -14.90541 -14.66871 -14.35340 -14.02563 -13.61914 -13.23618 -12.99026 -12.95312 -12.64525 -12.52263 -12.48263 -12.40415 -12.30477 -12.22541 -12.11395 -11.96875 -11.43850 -11.36985 -11.21636 -11.14450 -10.81418 -10.30620 -9.65602 -9.39735 -8.98421 -8.48168 -6.16480 -0.31667 -0.02341 0.49100 0.75480 1.32991 1.42423 1.45529 1.50753 1.82330 2.16590 2.50350 2.80665 2.83906 2.97397 3.15059 3.23921 3.40442 3.43584 3.63365 3.79450 3.90499 3.98077 4.10093 4.12646 4.13670 4.31816 4.36909 4.42850 4.57252 4.63749 4.71606 4.74346 4.79102 4.84840 5.01620 5.06180 5.12179 5.15930 5.30438 5.31559 5.41340 5.64415 5.72015 5.74708 5.89065 6.01938 6.19645 6.29331 6.96593 6.97410 7.03678 7.78246 8.75259 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.002003 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.068084 B =13975.777109 C =14606.827205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.108 3.892 11 C -0.246 4.246 12 C -0.076 4.076 13 C -0.177 4.177 14 C -0.029 4.029 15 C -0.084 4.084 16 C 0.516 3.484 17 O -0.551 6.551 18 N -0.641 5.641 19 C 0.045 3.955 20 C 0.133 3.867 21 N -0.503 5.503 22 C 0.307 3.693 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.143 4.143 26 N -0.521 5.521 27 C 0.120 3.880 28 C -0.191 4.191 29 H 0.272 0.728 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.439 0.561 36 H 0.215 0.785 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.168 0.832 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 -27.676 -1.759 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.059 3.941 11 C -0.265 4.265 12 C -0.094 4.094 13 C -0.196 4.196 14 C -0.030 4.030 15 C -0.123 4.123 16 C 0.306 3.694 17 O -0.427 6.427 18 N -0.290 5.290 19 C -0.056 4.056 20 C -0.036 4.036 21 N -0.216 5.216 22 C 0.041 3.959 23 C -0.146 4.146 24 C -0.181 4.181 25 C -0.181 4.181 26 N -0.235 5.235 27 C -0.047 4.047 28 C -0.210 4.210 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.151 0.849 35 H 0.281 0.719 36 H 0.232 0.768 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.185 0.815 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.165 -27.430 -3.283 27.651 hybrid contribution 0.173 1.806 0.987 2.066 sum 1.339 -25.624 -2.296 25.762 Atomic orbital electron populations 1.70184 1.07989 1.28738 1.49080 1.26602 0.96905 1.02749 0.95957 0.84585 0.77868 0.74565 0.79171 1.19054 1.19355 1.17561 1.21804 0.92459 0.81521 1.53141 0.88293 1.83929 1.35905 1.12579 1.81758 1.19929 0.91672 0.88052 0.94494 1.21310 0.93205 1.00274 1.11724 1.21142 1.00208 0.91614 0.96408 1.21009 0.93568 0.98000 1.06987 1.19161 0.93674 0.92826 0.97353 1.20714 1.05155 0.93608 0.92805 1.21384 0.75856 0.79627 0.92557 1.90772 1.50093 1.60162 1.41668 1.43236 1.58404 1.19774 1.07554 1.19642 0.97744 0.99006 0.89172 1.23690 0.93958 0.91591 0.94401 1.68116 1.26193 1.25928 1.01396 1.22524 0.86954 0.90847 0.95597 1.20726 1.07656 0.95137 0.91037 1.23083 0.90670 1.00287 1.04073 1.23055 1.00625 0.90206 1.04185 1.68170 1.23334 1.09403 1.22583 1.23561 0.97413 0.95918 0.87854 1.20255 0.99401 0.90406 1.10927 0.91873 0.86711 0.83871 0.83153 0.82630 0.84871 0.71933 0.76816 0.85567 0.87908 0.86342 0.85993 0.89069 0.81472 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.79 13.67 21.61 0.30 -57.50 16 2 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 3 Si 1.02 43.99 29.55 68.60 2.03 46.02 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.41 -24.82 9.49 67.92 0.64 -24.18 16 8 H 0.10 5.49 5.20 -2.90 -0.02 5.47 16 9 O -0.23 -14.60 9.76 -22.65 -0.22 -14.82 16 10 C 0.11 5.59 6.65 22.58 0.15 5.74 16 11 C -0.25 -11.13 9.17 22.39 0.21 -10.92 16 12 C -0.08 -2.65 10.04 22.25 0.22 -2.43 16 13 C -0.18 -5.35 9.70 22.30 0.22 -5.13 16 14 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 15 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 16 C 0.52 11.48 7.64 87.66 0.67 12.15 16 17 O -0.55 -18.83 13.33 -3.05 -0.04 -18.87 16 18 N -0.64 -9.14 5.38 -302.92 -1.63 -10.77 16 19 C 0.04 0.89 6.46 38.32 0.25 1.14 16 20 C 0.13 2.16 11.24 84.87 0.95 3.12 16 21 N -0.50 -10.54 9.33 -187.39 -1.75 -12.29 16 22 C 0.31 7.47 7.31 138.75 1.01 8.48 16 23 C -0.13 -2.36 6.23 -11.54 -0.07 -2.44 16 24 C -0.14 -1.97 10.01 30.60 0.31 -1.66 16 25 C -0.14 -1.89 10.23 30.60 0.31 -1.58 16 26 N -0.52 -14.82 10.32 -187.38 -1.93 -16.76 16 27 C 0.12 3.27 9.98 84.87 0.85 4.11 16 28 C -0.19 -8.16 9.65 22.39 0.22 -7.94 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.12 5.31 5.64 -2.91 -0.02 5.30 16 31 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.16 1.35 8.09 -2.39 -0.02 1.33 16 34 H 0.13 1.78 8.09 -2.38 -0.02 1.76 16 35 H 0.44 1.80 8.80 -92.70 -0.82 0.98 16 36 H 0.22 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 1.56 7.54 -2.39 -0.02 1.54 16 39 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.17 5.09 5.99 -2.91 -0.02 5.07 16 43 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -88.18 374.61 3.49 -84.69 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.26 Total: 25.19 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 6.48 Total: -24.89 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -5.02 Total: -97.31 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.26 Total: -33.70 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -88.18 3.49 -84.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089796603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.575 kcal (2) G-P(sol) polarization free energy of solvation -88.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds