Wall clock time and date at job start Tue Mar 31 2020 22:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99855 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47288 * 300.00091 * 3 2 1 6 6 H 1.48497 * 109.46960 * 60.00605 * 3 2 1 7 7 C 1.37881 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47154 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47135 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54310 * 68.37111 * 11 10 9 13 13 O 1.42097 * 110.54138 * 291.62788 * 11 10 9 14 14 N 1.65591 * 104.45033 * 179.97438 * 11 10 9 15 15 C 1.47077 * 120.88456 * 90.00065 * 14 11 10 16 16 C 1.53246 * 108.52493 * 231.16496 * 15 14 11 17 17 N 1.46896 * 109.33500 * 306.17131 * 16 15 14 18 18 C 1.46900 * 110.99673 * 187.25209 * 17 16 15 19 19 C 1.50705 * 109.47156 * 169.99381 * 18 17 16 20 20 C 1.38675 * 120.41661 * 89.99852 * 19 18 17 21 21 C 1.38628 * 118.42013 * 179.97438 * 20 19 18 22 22 C 1.38220 * 119.16326 * 359.97438 * 21 20 19 23 23 N 1.31857 * 120.76198 * 0.02562 * 22 21 20 24 24 C 1.31883 * 121.72627 * 359.97438 * 23 22 21 25 25 C 1.46897 * 111.27356 * 63.10055 * 17 16 15 26 26 C 1.47085 * 120.88159 * 269.97648 * 14 11 10 27 27 H 0.96997 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47107 * 60.00484 * 9 7 2 29 29 H 1.08994 * 109.47195 * 300.00407 * 9 7 2 30 30 H 1.08994 * 109.46935 * 60.00356 * 10 9 7 31 31 H 1.09003 * 109.46802 * 299.99995 * 10 9 7 32 32 H 1.08992 * 109.63192 * 111.45032 * 15 14 11 33 33 H 1.09004 * 109.78601 * 350.96307 * 15 14 11 34 34 H 1.08998 * 109.49495 * 186.20573 * 16 15 14 35 35 H 1.09002 * 109.49093 * 66.12096 * 16 15 14 36 36 H 1.08998 * 109.47221 * 49.99743 * 18 17 16 37 37 H 1.09001 * 109.47445 * 289.99573 * 18 17 16 38 38 H 1.07998 * 120.78542 * 359.70640 * 20 19 18 39 39 H 1.07996 * 120.41751 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.62169 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.61759 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.49433 * 56.86046 * 25 17 16 43 43 H 1.09005 * 109.49271 * 176.93099 * 25 17 16 44 44 H 1.08999 * 109.63246 * 248.54295 * 26 14 11 45 45 H 1.08999 * 109.62986 * 9.12696 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3384 -5.2331 -0.0013 12 8 0.6647 -5.4194 -1.2386 13 8 0.6639 -5.4200 1.2354 14 7 2.5205 -6.3927 -0.0020 15 6 3.0595 -6.9220 1.2600 16 6 4.5887 -6.8366 1.2101 17 7 5.0741 -7.5082 -0.0029 18 6 6.5402 -7.5995 -0.0032 19 6 6.9872 -8.5004 -1.1255 20 6 7.2540 -7.9774 -2.3819 21 6 7.6631 -8.8437 -3.3839 22 6 7.7912 -10.1902 -3.0994 23 7 7.5288 -10.6524 -1.8927 24 6 7.1375 -9.8578 -0.9155 25 6 4.5882 -6.8357 -1.2151 26 6 3.0590 -6.9211 -1.2646 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 2.7546 -7.9614 1.3810 33 1 2.6870 -6.3313 2.0969 34 1 5.0092 -7.3248 2.0892 35 1 4.8942 -5.7904 1.1935 36 1 6.8790 -8.0091 0.9484 37 1 6.9661 -6.6059 -0.1433 38 1 7.1414 -6.9210 -2.5762 39 1 7.8790 -8.4711 -4.3743 40 1 8.1097 -10.8716 -3.8743 41 1 6.9322 -10.2729 0.0602 42 1 4.8938 -5.7895 -1.1980 43 1 5.0084 -7.3232 -2.0948 44 1 2.7541 -7.9605 -1.3863 45 1 2.6859 -6.3270 -2.0989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091037537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:40 Heat of formation + Delta-G solvation = -28.107756 kcal Electronic energy + Delta-G solvation = -27414.546094 eV Core-core repulsion = 23559.170335 eV Total energy + Delta-G solvation = -3855.375758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.62975 -38.98112 -36.69561 -35.54715 -35.23208 -33.93079 -32.73778 -31.83212 -31.25511 -31.19825 -27.79074 -25.65516 -24.73821 -24.26099 -23.59526 -22.03988 -21.72048 -20.47436 -18.58899 -17.68820 -17.39886 -16.70456 -16.60001 -16.06516 -15.78127 -15.59821 -15.48878 -15.09301 -14.63595 -14.58201 -14.54223 -14.10449 -13.89122 -13.47976 -13.40521 -13.38959 -12.65024 -12.57699 -12.42224 -12.17198 -11.93100 -11.79919 -11.64020 -11.61510 -11.44427 -11.16370 -11.13261 -11.00252 -10.85661 -10.43585 -10.42769 -10.12442 -9.83593 -9.76405 -9.39708 -9.34989 -8.93605 -8.54773 -8.52471 -6.16492 -4.22258 0.70859 0.76687 0.94535 2.95806 3.21607 3.28937 3.31879 3.35388 3.77596 4.12364 4.26162 4.34960 4.37944 4.46294 4.50296 4.52522 4.63677 4.66793 4.89505 4.92756 5.00753 5.11383 5.18666 5.19146 5.24054 5.29197 5.38136 5.44167 5.46264 5.50789 5.58060 5.66183 5.77282 5.79412 5.90285 5.94264 6.01979 6.36559 6.43795 6.59176 6.70435 6.72952 7.25857 7.31857 7.66648 7.76310 8.13303 8.81251 9.42675 10.94556 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.002713 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.898143 B =10319.317166 C =11256.220177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.591 3.409 12 O -0.963 6.963 13 O -0.963 6.963 14 N -1.009 6.009 15 C 0.128 3.872 16 C 0.040 3.960 17 N -0.530 5.530 18 C 0.096 3.904 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.173 4.173 22 C 0.095 3.905 23 N -0.487 5.487 24 C 0.119 3.881 25 C 0.034 3.966 26 C 0.130 3.870 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.584 -18.050 -2.405 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.689 3.311 12 O -0.954 6.954 13 O -0.953 6.953 14 N -0.845 5.845 15 C 0.002 3.998 16 C -0.089 4.089 17 N -0.255 5.255 18 C -0.032 4.032 19 C -0.130 4.130 20 C -0.098 4.098 21 C -0.192 4.192 22 C -0.062 4.062 23 N -0.195 5.195 24 C -0.038 4.038 25 C -0.095 4.095 26 C 0.004 3.996 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.366 -19.528 -2.229 24.949 hybrid contribution 1.335 3.040 -0.280 3.332 sum 16.701 -16.488 -2.509 23.602 Atomic orbital electron populations 1.69961 1.06110 1.27129 1.49560 1.25073 0.94975 0.99554 0.94902 0.86420 0.79877 0.83202 0.77818 1.19700 1.20765 1.20752 1.21022 0.93013 0.89767 1.52126 0.92104 1.18962 0.92687 0.90578 0.98859 1.30502 1.13639 1.18321 1.09747 1.05739 0.74874 0.76320 0.74138 1.93536 1.71269 1.85201 1.45346 1.93536 1.71208 1.85195 1.45364 1.58074 1.59018 1.56052 1.11360 1.21421 0.91921 1.00898 0.85515 1.22555 0.96146 0.97604 0.92642 1.61890 1.08146 1.52943 1.02510 1.20974 0.87999 0.97259 0.96929 1.20759 1.00536 0.96028 0.95657 1.21573 0.95346 1.00463 0.92390 1.22142 1.01621 0.94986 1.00498 1.22778 0.95599 0.93784 0.94006 1.67724 1.11211 1.39692 1.00893 1.22652 0.93660 0.89352 0.98170 1.22636 0.96149 0.97317 0.93396 1.21402 0.91929 1.00787 0.85490 0.92539 0.94870 0.94861 0.86461 0.86521 0.90557 0.88642 0.89396 0.93766 0.89287 0.93443 0.84975 0.84763 0.82900 0.82759 0.93829 0.89641 0.90667 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.03 6.12 37.16 0.23 -10.80 16 11 S 2.59 46.11 5.42 -107.50 -0.58 45.53 16 12 O -0.96 -19.79 16.79 -57.54 -0.97 -20.76 16 13 O -0.96 -19.66 16.80 -57.54 -0.97 -20.63 16 14 N -1.01 -13.48 3.26 -113.23 -0.37 -13.85 16 15 C 0.13 1.42 6.46 -3.60 -0.02 1.40 16 16 C 0.04 0.35 5.62 -3.70 -0.02 0.33 16 17 N -0.53 -4.73 4.62 -235.76 -1.09 -5.82 16 18 C 0.10 0.70 5.14 -4.97 -0.03 0.67 16 19 C -0.13 -1.01 4.90 -104.48 -0.51 -1.52 16 20 C -0.07 -0.52 8.04 -39.28 -0.32 -0.84 16 21 C -0.17 -1.19 10.11 -39.44 -0.40 -1.59 16 22 C 0.10 0.75 11.18 -17.55 -0.20 0.56 16 23 N -0.49 -4.80 10.36 -13.25 -0.14 -4.94 16 24 C 0.12 1.04 10.86 -17.55 -0.19 0.85 16 25 C 0.03 0.33 5.36 -3.70 -0.02 0.31 16 26 C 0.13 1.51 6.46 -3.60 -0.02 1.49 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 31 H 0.12 1.97 8.14 -51.92 -0.42 1.54 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.07 7.21 -51.93 -0.37 0.69 16 34 H 0.09 0.60 7.99 -51.93 -0.41 0.18 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.53 7.92 -51.93 -0.41 0.12 16 37 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.13 0.80 7.96 -52.49 -0.42 0.39 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.74 5.67 -51.93 -0.29 0.45 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.11 7.19 -51.93 -0.37 0.74 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -35.50 378.56 -11.64 -47.14 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.90 Total: -1.22 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -2.05 Total: -21.57 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.86 Total: -50.14 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.93 Total: -41.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 46.11 SS G_CDS: -0.58 Total: 45.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.50 -11.64 -47.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091037537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.032 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds