Wall clock time and date at job start Tue Mar 31 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99855 * 2 1 4 4 H 1.48505 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47288 * 300.00091 * 3 2 1 6 6 H 1.48497 * 109.46960 * 60.00605 * 3 2 1 7 7 C 1.37881 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47154 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47135 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54310 * 68.37111 * 11 10 9 13 13 O 1.42097 * 110.54138 * 291.62788 * 11 10 9 14 14 N 1.65591 * 104.45033 * 179.97438 * 11 10 9 15 15 C 1.47077 * 120.88456 * 90.00065 * 14 11 10 16 16 C 1.53246 * 108.52493 * 231.16496 * 15 14 11 17 17 N 1.46896 * 109.33500 * 306.17131 * 16 15 14 18 18 C 1.46900 * 110.99673 * 187.25209 * 17 16 15 19 19 C 1.50705 * 109.47156 * 169.99381 * 18 17 16 20 20 C 1.38675 * 120.41661 * 89.99852 * 19 18 17 21 21 C 1.38628 * 118.42013 * 179.97438 * 20 19 18 22 22 C 1.38220 * 119.16326 * 359.97438 * 21 20 19 23 23 N 1.31857 * 120.76198 * 0.02562 * 22 21 20 24 24 C 1.31883 * 121.72627 * 359.97438 * 23 22 21 25 25 C 1.46897 * 111.27356 * 63.10055 * 17 16 15 26 26 C 1.47085 * 120.88159 * 269.97648 * 14 11 10 27 27 H 0.96997 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47107 * 60.00484 * 9 7 2 29 29 H 1.08994 * 109.47195 * 300.00407 * 9 7 2 30 30 H 1.08994 * 109.46935 * 60.00356 * 10 9 7 31 31 H 1.09003 * 109.46802 * 299.99995 * 10 9 7 32 32 H 1.08992 * 109.63192 * 111.45032 * 15 14 11 33 33 H 1.09004 * 109.78601 * 350.96307 * 15 14 11 34 34 H 1.08998 * 109.49495 * 186.20573 * 16 15 14 35 35 H 1.09002 * 109.49093 * 66.12096 * 16 15 14 36 36 H 1.08998 * 109.47221 * 49.99743 * 18 17 16 37 37 H 1.09001 * 109.47445 * 289.99573 * 18 17 16 38 38 H 1.07998 * 120.78542 * 359.70640 * 20 19 18 39 39 H 1.07996 * 120.41751 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.62169 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.61759 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.49433 * 56.86046 * 25 17 16 43 43 H 1.09005 * 109.49271 * 176.93099 * 25 17 16 44 44 H 1.08999 * 109.63246 * 248.54295 * 26 14 11 45 45 H 1.08999 * 109.62986 * 9.12696 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3384 -5.2331 -0.0013 12 8 0.6647 -5.4194 -1.2386 13 8 0.6639 -5.4200 1.2354 14 7 2.5205 -6.3927 -0.0020 15 6 3.0595 -6.9220 1.2600 16 6 4.5887 -6.8366 1.2101 17 7 5.0741 -7.5082 -0.0029 18 6 6.5402 -7.5995 -0.0032 19 6 6.9872 -8.5004 -1.1255 20 6 7.2540 -7.9774 -2.3819 21 6 7.6631 -8.8437 -3.3839 22 6 7.7912 -10.1902 -3.0994 23 7 7.5288 -10.6524 -1.8927 24 6 7.1375 -9.8578 -0.9155 25 6 4.5882 -6.8357 -1.2151 26 6 3.0590 -6.9211 -1.2646 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 2.7546 -7.9614 1.3810 33 1 2.6870 -6.3313 2.0969 34 1 5.0092 -7.3248 2.0892 35 1 4.8942 -5.7904 1.1935 36 1 6.8790 -8.0091 0.9484 37 1 6.9661 -6.6059 -0.1433 38 1 7.1414 -6.9210 -2.5762 39 1 7.8790 -8.4711 -4.3743 40 1 8.1097 -10.8716 -3.8743 41 1 6.9322 -10.2729 0.0602 42 1 4.8938 -5.7895 -1.1980 43 1 5.0084 -7.3232 -2.0948 44 1 2.7541 -7.9605 -1.3863 45 1 2.6859 -6.3270 -2.0989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091037537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:39 Heat of formation + Delta-G solvation = -54.351758 kcal Electronic energy + Delta-G solvation = -27415.684119 eV Core-core repulsion = 23559.170335 eV Total energy + Delta-G solvation = -3856.513784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20328 -39.75011 -38.24883 -37.05124 -36.11657 -35.90375 -33.36263 -33.14239 -32.42646 -32.07038 -28.51977 -27.61059 -25.49249 -24.99269 -24.23824 -23.63189 -22.54650 -21.44656 -19.83948 -19.14908 -18.38291 -17.92757 -17.39042 -17.19951 -17.08800 -16.58189 -16.46387 -16.30349 -15.80667 -15.75115 -15.29647 -15.09435 -14.94042 -14.55474 -14.48472 -14.05436 -13.94413 -13.75664 -13.52871 -13.46068 -13.22785 -13.06891 -12.97060 -12.87476 -12.80206 -12.55651 -12.28384 -12.23808 -12.13825 -11.99784 -11.87932 -11.66574 -11.13697 -10.69349 -10.67348 -10.37051 -10.05592 -9.90792 -9.23703 -8.27631 -6.41862 -0.74093 0.21512 0.39600 1.39842 1.40368 1.53460 1.70349 2.36489 2.73807 2.84756 3.05839 3.13913 3.16108 3.59283 3.60490 3.83189 3.95894 4.00713 4.01779 4.11764 4.13360 4.16300 4.25221 4.29285 4.34673 4.49709 4.57671 4.69267 4.71206 4.73878 4.79631 4.86905 4.93634 4.95905 5.04964 5.12034 5.24849 5.25098 5.25639 5.36395 5.59531 5.66590 5.83960 6.03628 6.04280 6.07183 6.72014 7.10358 7.28526 8.84856 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.002713 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.898143 B =10319.317166 C =11256.220177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.075 0.925 9 C 0.021 3.979 10 C -0.584 4.584 11 S 2.613 3.387 12 O -0.995 6.995 13 O -0.992 6.992 14 N -0.998 5.998 15 C 0.119 3.881 16 C 0.044 3.956 17 N -0.536 5.536 18 C 0.100 3.900 19 C -0.131 4.131 20 C -0.078 4.078 21 C -0.172 4.172 22 C 0.082 3.918 23 N -0.517 5.517 24 C 0.105 3.895 25 C 0.040 3.960 26 C 0.123 3.877 27 H 0.267 0.733 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.046 0.954 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.454 -18.086 -2.495 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.094 0.906 9 C -0.018 4.018 10 C -0.716 4.716 11 S 2.711 3.289 12 O -0.985 6.985 13 O -0.983 6.983 14 N -0.837 5.837 15 C -0.006 4.006 16 C -0.085 4.085 17 N -0.261 5.261 18 C -0.027 4.027 19 C -0.133 4.133 20 C -0.105 4.105 21 C -0.191 4.191 22 C -0.075 4.075 23 N -0.226 5.226 24 C -0.052 4.052 25 C -0.090 4.090 26 C -0.002 4.002 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.164 0.836 39 H 0.175 0.825 40 H 0.188 0.812 41 H 0.180 0.820 42 H 0.065 0.935 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.253 -19.566 -2.317 26.858 hybrid contribution 0.459 2.926 -0.275 2.974 sum 18.711 -16.640 -2.592 25.174 Atomic orbital electron populations 1.70107 1.08102 1.28288 1.50918 1.26127 0.95850 1.03914 0.94402 0.85263 0.79185 0.77997 0.77798 1.17835 1.20408 1.20383 1.21523 0.93918 0.90712 1.51401 0.90638 1.18814 0.93584 0.93127 0.96247 1.30371 1.12642 1.16619 1.11956 1.04776 0.75046 0.76349 0.72744 1.93488 1.72715 1.85679 1.46611 1.93490 1.72590 1.85655 1.46525 1.57694 1.58385 1.54474 1.13183 1.21701 0.93748 1.01017 0.84120 1.22555 0.94173 0.98121 0.93691 1.61864 1.09355 1.52780 1.02119 1.20997 0.86703 0.97498 0.97512 1.20830 1.00556 0.95766 0.96151 1.21836 0.95044 1.01267 0.92329 1.22414 1.00693 0.94534 1.01496 1.23169 0.95531 0.94833 0.93937 1.67711 1.12316 1.40725 1.01876 1.22856 0.94033 0.89874 0.98460 1.22571 0.94266 0.97796 0.94364 1.21610 0.93618 1.00666 0.84331 0.92378 0.97680 0.97618 0.84199 0.84365 0.89827 0.88884 0.86812 0.93670 0.87777 0.92843 0.83635 0.82522 0.81175 0.82019 0.93530 0.88572 0.90314 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 3 Si 0.97 42.68 29.54 68.60 2.03 44.70 16 4 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.32 9.11 25.60 0.23 -29.09 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 9 C 0.02 1.10 4.98 29.85 0.15 1.24 16 10 C -0.58 -21.58 6.12 71.98 0.44 -21.14 16 11 S 2.61 93.39 5.42 -56.49 -0.31 93.08 16 12 O -0.99 -41.63 16.79 -127.65 -2.14 -43.78 16 13 O -0.99 -41.15 16.80 -127.65 -2.14 -43.30 16 14 N -1.00 -25.44 3.26 -512.16 -1.67 -27.11 16 15 C 0.12 2.42 6.46 86.35 0.56 2.98 16 16 C 0.04 0.64 5.62 86.39 0.49 1.13 16 17 N -0.54 -8.01 4.62 -899.82 -4.16 -12.17 16 18 C 0.10 1.15 5.14 85.56 0.44 1.59 16 19 C -0.13 -1.76 4.90 -19.77 -0.10 -1.86 16 20 C -0.08 -0.96 8.04 22.47 0.18 -0.77 16 21 C -0.17 -1.98 10.11 22.36 0.23 -1.76 16 22 C 0.08 1.17 11.18 84.68 0.95 2.12 16 23 N -0.52 -9.67 10.36 -195.85 -2.03 -11.70 16 24 C 0.10 1.67 10.86 84.67 0.92 2.59 16 25 C 0.04 0.66 5.36 86.38 0.46 1.12 16 26 C 0.12 2.67 6.46 86.35 0.56 3.23 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 31 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.95 7.21 -2.39 -0.02 1.93 16 34 H 0.11 1.12 7.99 -2.39 -0.02 1.10 16 35 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 0.89 7.92 -2.39 -0.02 0.87 16 37 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 38 H 0.15 1.33 7.96 -2.91 -0.02 1.31 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.10 1.41 5.67 -2.38 -0.01 1.40 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 2.03 7.19 -2.39 -0.02 2.01 16 Total: -1.00 -77.91 378.56 -3.20 -81.11 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.97 Total: 13.86 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 5.97 Total: -38.43 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -7.57 Total: -107.26 kcal Atomic # 8 Polarization: -82.78 SS G_CDS: -4.29 Total: -87.07 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 93.39 SS G_CDS: -0.31 Total: 93.08 kcal Total: -77.91 -3.20 -81.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091037537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.753 kcal (2) G-P(sol) polarization free energy of solvation -77.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds