Wall clock time and date at job start Tue Mar 31 2020 22:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99755 * 270.00096 * 10 9 7 12 12 C 1.50704 * 109.47158 * 89.99998 * 11 10 9 13 13 C 1.34508 * 125.78966 * 89.71164 * 12 11 10 14 14 C 1.41389 * 106.84038 * 179.89105 * 13 12 11 15 15 C 1.34515 * 106.83869 * 0.37096 * 14 13 12 16 16 O 1.34298 * 125.78736 * 270.01953 * 12 11 10 17 17 C 1.34774 * 119.99868 * 89.99907 * 10 9 7 18 18 O 1.21289 * 120.00200 * 0.02562 * 17 10 9 19 19 C 1.50696 * 120.00038 * 180.02562 * 17 10 9 20 20 C 1.50703 * 109.47568 * 179.97438 * 19 17 10 21 21 C 1.35097 * 125.68454 * 124.99471 * 20 19 17 22 22 N 1.36834 * 107.18032 * 180.02562 * 21 20 19 23 23 C 1.36485 * 132.57290 * 180.02562 * 22 21 20 24 24 C 1.34952 * 120.61310 * 179.97438 * 23 22 21 25 25 C 1.40465 * 120.29847 * 0.02562 * 24 23 22 26 26 C 1.36025 * 119.69558 * 359.97438 * 25 24 23 27 27 C 1.37083 * 107.00086 * 0.02562 * 22 21 20 28 28 N 1.32564 * 108.02969 * 359.74009 * 27 22 21 29 29 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 31 31 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 32 32 H 1.08997 * 109.46694 * 209.99389 * 11 10 9 33 33 H 1.08995 * 109.47258 * 329.99665 * 11 10 9 34 34 H 1.07998 * 126.58421 * 0.02562 * 13 12 11 35 35 H 1.07997 * 126.57555 * 180.16762 * 14 13 12 36 36 H 1.07998 * 125.78768 * 179.74826 * 15 14 13 37 37 H 1.09003 * 109.47424 * 300.00151 * 19 17 10 38 38 H 1.09003 * 109.47504 * 60.00089 * 19 17 10 39 39 H 1.07999 * 126.41611 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.69153 * 359.95099 * 23 22 21 41 41 H 1.08000 * 119.84965 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.15581 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.33622 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1694 -1.2682 12 6 3.9222 -3.4371 -1.7032 13 6 5.1848 -3.7699 -1.3803 14 6 6.0299 -2.8206 -1.9999 15 6 5.2325 -1.9597 -2.6576 16 8 3.9570 -2.3381 -2.4743 17 6 2.6409 -4.1249 1.1677 18 8 2.2465 -3.6642 2.2181 19 6 3.6206 -5.2700 1.1678 20 6 3.9475 -5.6515 2.5886 21 6 3.8210 -6.8863 3.1220 22 7 4.2196 -6.8049 4.4284 23 6 4.3000 -7.7302 5.4286 24 6 4.7375 -7.3791 6.6560 25 6 5.1164 -6.0527 6.9207 26 6 5.0412 -5.1205 5.9330 27 6 4.5823 -5.5028 4.6565 28 7 4.4142 -4.8265 3.5288 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.9074 -5.2272 -1.1378 33 1 1.9057 -4.0556 -2.0278 34 1 5.4940 -4.6036 -0.7674 35 1 7.1083 -2.7905 -1.9514 36 1 5.5622 -1.1084 -3.2346 37 1 3.1807 -6.1246 0.6537 38 1 4.5332 -4.9675 0.6541 39 1 3.4701 -7.7717 2.6128 40 1 4.0104 -8.7527 5.2360 41 1 4.7966 -8.1214 7.4383 42 1 5.4658 -5.7742 7.9039 43 1 5.3303 -4.0978 6.1250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102639184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:00 Heat of formation + Delta-G solvation = 60.673447 kcal Electronic energy + Delta-G solvation = -28857.274529 eV Core-core repulsion = 24870.304661 eV Total energy + Delta-G solvation = -3986.969868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.69022 -43.32290 -40.60227 -38.27937 -36.78364 -34.94013 -34.53120 -33.76548 -32.89752 -31.43547 -30.29941 -29.52684 -28.36651 -26.66130 -25.04703 -24.00881 -23.58386 -22.55069 -21.91375 -21.57183 -19.91118 -18.80043 -18.69920 -18.36429 -17.90199 -17.45088 -17.16095 -16.78424 -16.53586 -16.49254 -16.17578 -15.89375 -15.48966 -15.28305 -14.91944 -14.43085 -14.33980 -14.04436 -13.80389 -13.64625 -13.52194 -13.35588 -13.24064 -13.08555 -12.93370 -12.73141 -12.56741 -12.44689 -12.35278 -12.21389 -11.94797 -11.71154 -10.92764 -10.70613 -10.63407 -10.59669 -9.64647 -9.58793 -9.25046 -8.74311 -8.21928 -6.31785 -0.09181 0.39750 0.88143 1.28750 1.31826 1.43501 1.70712 1.76554 1.87335 1.91894 2.33530 2.38780 2.54157 2.69025 3.08366 3.28908 3.52370 3.81022 3.90432 3.95241 4.02171 4.14686 4.19989 4.22395 4.28421 4.30981 4.43746 4.49516 4.59083 4.63279 4.86474 4.98668 5.00256 5.02536 5.10141 5.18038 5.23489 5.31899 5.32485 5.55706 5.65381 5.67582 5.74005 5.83362 6.09261 6.25162 6.39232 6.70637 6.77794 7.05737 7.31698 7.52359 8.85984 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.003466 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.155959 B = 8076.816462 C = 9137.088851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.040 0.960 9 C 0.263 3.737 10 N -0.601 5.601 11 C 0.184 3.816 12 C -0.034 4.034 13 C -0.213 4.213 14 C -0.226 4.226 15 C -0.056 4.056 16 O -0.187 6.187 17 C 0.505 3.495 18 O -0.578 6.578 19 C -0.054 4.054 20 C 0.045 3.955 21 C -0.085 4.085 22 N -0.368 5.368 23 C 0.046 3.954 24 C -0.143 4.143 25 C -0.084 4.084 26 C -0.120 4.120 27 C 0.192 3.808 28 N -0.528 5.528 29 H 0.265 0.735 30 H 0.027 0.973 31 H -0.002 1.002 32 H 0.153 0.847 33 H 0.098 0.902 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.222 0.778 37 H 0.156 0.844 38 H 0.116 0.884 39 H 0.228 0.772 40 H 0.203 0.797 41 H 0.194 0.806 42 H 0.174 0.826 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.314 -21.904 4.779 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.058 0.942 9 C 0.142 3.858 10 N -0.333 5.333 11 C 0.061 3.939 12 C -0.085 4.085 13 C -0.233 4.233 14 C -0.245 4.245 15 C -0.124 4.124 16 O -0.083 6.083 17 C 0.294 3.706 18 O -0.456 6.456 19 C -0.094 4.094 20 C -0.087 4.087 21 C -0.216 4.216 22 N -0.040 5.040 23 C -0.075 4.075 24 C -0.163 4.163 25 C -0.108 4.108 26 C -0.141 4.141 27 C -0.052 4.052 28 N -0.249 5.249 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.171 0.829 33 H 0.116 0.884 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.238 0.762 37 H 0.174 0.826 38 H 0.134 0.866 39 H 0.245 0.755 40 H 0.219 0.781 41 H 0.211 0.789 42 H 0.191 0.809 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.798 -20.624 5.035 24.789 hybrid contribution 0.095 1.125 0.074 1.131 sum 12.893 -19.499 5.108 23.928 Atomic orbital electron populations 1.70037 1.07150 1.27700 1.52024 1.25701 0.95735 1.02499 0.95008 0.85544 0.78645 0.79678 0.78064 1.20003 1.19018 1.20777 1.21541 0.92523 0.92059 1.49567 0.94194 1.18746 0.87685 0.83701 0.95667 1.48279 1.44664 1.34766 1.05587 1.20309 0.91190 0.96889 0.85489 1.23300 0.98220 0.89219 0.97795 1.21906 0.91658 1.04181 1.05545 1.22100 1.01681 0.97688 1.03016 1.24661 0.80266 1.02485 1.05011 1.84106 1.30518 1.38100 1.55556 1.21120 0.81853 0.84711 0.82902 1.90684 1.58923 1.63134 1.32892 1.20310 0.99198 0.97851 0.92064 1.20498 1.02006 0.90311 0.95914 1.22855 1.13731 1.01728 0.83327 1.43053 1.41199 1.09753 1.10005 1.22477 1.01951 0.95667 0.87367 1.21378 1.00603 0.97842 0.96464 1.21491 0.97049 0.92472 0.99749 1.20506 1.02673 1.02279 0.88617 1.21411 1.05099 0.81782 0.96887 1.70600 1.21738 1.32810 0.99715 0.92605 0.95533 0.98355 0.82922 0.88414 0.81563 0.81455 0.76166 0.82647 0.86644 0.75539 0.78053 0.78884 0.80880 0.84236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.84 13.29 21.45 0.28 -58.56 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 48.70 29.54 68.60 2.03 50.72 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.52 -31.94 9.39 25.60 0.24 -31.70 16 8 H 0.04 2.55 7.81 -2.91 -0.02 2.53 16 9 C 0.26 14.89 5.20 85.63 0.45 15.34 16 10 N -0.60 -26.57 2.44 -830.48 -2.03 -28.59 16 11 C 0.18 5.85 5.79 85.63 0.50 6.34 16 12 C -0.03 -1.18 6.90 24.83 0.17 -1.01 16 13 C -0.21 -6.46 9.98 22.19 0.22 -6.23 16 14 C -0.23 -6.59 10.91 22.19 0.24 -6.35 16 15 C -0.06 -1.79 12.09 66.97 0.81 -0.98 16 16 O -0.19 -7.35 10.65 -2.46 -0.03 -7.37 16 17 C 0.51 22.58 7.66 87.66 0.67 23.26 16 18 O -0.58 -33.18 15.15 -3.06 -0.05 -33.23 16 19 C -0.05 -1.65 4.81 29.10 0.14 -1.51 16 20 C 0.05 1.54 5.84 41.58 0.24 1.78 16 21 C -0.09 -2.12 11.63 83.19 0.97 -1.15 16 22 N -0.37 -9.28 2.95 -352.16 -1.04 -10.32 16 23 C 0.05 0.68 10.95 83.21 0.91 1.59 16 24 C -0.14 -1.63 9.98 22.06 0.22 -1.41 16 25 C -0.08 -1.33 10.07 22.30 0.22 -1.11 16 26 C -0.12 -3.17 10.11 22.41 0.23 -2.94 16 27 C 0.19 6.45 7.81 134.10 1.05 7.50 16 28 N -0.53 -22.04 10.68 -182.41 -1.95 -23.98 16 29 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.03 1.51 7.89 -2.39 -0.02 1.49 16 31 H 0.00 -0.11 7.42 -2.38 -0.02 -0.12 16 32 H 0.15 3.03 6.44 -2.39 -0.02 3.02 16 33 H 0.10 3.00 7.89 -2.39 -0.02 2.98 16 34 H 0.17 4.04 6.15 -2.91 -0.02 4.02 16 35 H 0.17 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.22 5.27 8.06 -2.91 -0.02 5.24 16 37 H 0.16 2.84 7.36 -2.39 -0.02 2.82 16 38 H 0.12 3.24 5.10 -2.39 -0.01 3.23 16 39 H 0.23 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.19 0.42 8.06 -2.91 -0.02 0.39 16 42 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -100.02 371.37 6.01 -94.01 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.04 Total: 14.90 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 7.74 Total: 2.42 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -4.73 Total: -121.46 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.07 Total: -40.60 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.72 kcal Total: -100.02 6.01 -94.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102639184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.684 kcal (2) G-P(sol) polarization free energy of solvation -100.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds