Wall clock time and date at job start Tue Mar 31 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47339 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47256 * 299.99994 * 3 2 1 6 6 H 1.48509 * 109.47305 * 59.99595 * 3 2 1 7 7 C 1.37878 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47049 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.46795 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54362 * 68.37778 * 11 10 9 13 13 O 1.42103 * 110.54477 * 291.62061 * 11 10 9 14 14 N 1.65606 * 104.44551 * 179.97438 * 11 10 9 15 15 C 1.47082 * 120.87957 * 90.00276 * 14 11 10 16 16 C 1.53244 * 108.51839 * 231.16019 * 15 14 11 17 17 N 1.46888 * 109.34033 * 306.16995 * 16 15 14 18 18 C 1.46906 * 111.00033 * 187.25258 * 17 16 15 19 19 C 1.50701 * 109.46965 * 170.00037 * 18 17 16 20 20 C 1.38229 * 119.61908 * 95.00405 * 19 18 17 21 21 C 1.38624 * 119.16133 * 179.97438 * 20 19 18 22 22 C 1.38674 * 118.42252 * 359.97438 * 21 20 19 23 23 C 1.38183 * 119.16232 * 359.97438 * 22 21 20 24 24 N 1.31853 * 119.62029 * 274.72454 * 19 18 17 25 25 C 1.46900 * 111.27305 * 63.10479 * 17 16 15 26 26 C 1.47075 * 120.88402 * 269.97593 * 14 11 10 27 27 H 0.97007 * 119.99757 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47446 * 59.99479 * 9 7 2 29 29 H 1.09001 * 109.46976 * 299.99182 * 9 7 2 30 30 H 1.08998 * 109.47049 * 59.99693 * 10 9 7 31 31 H 1.09001 * 109.46937 * 299.99663 * 10 9 7 32 32 H 1.08999 * 109.63044 * 111.44968 * 15 14 11 33 33 H 1.09005 * 109.63108 * 350.86631 * 15 14 11 34 34 H 1.09008 * 109.49105 * 186.20661 * 16 15 14 35 35 H 1.09000 * 109.48896 * 66.13307 * 16 15 14 36 36 H 1.08993 * 109.47164 * 289.99980 * 18 17 16 37 37 H 1.08996 * 109.46920 * 50.00014 * 18 17 16 38 38 H 1.07998 * 120.41981 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.78808 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.41807 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.61918 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.48943 * 56.84985 * 25 17 16 43 43 H 1.08993 * 109.49832 * 176.93585 * 25 17 16 44 44 H 1.09000 * 109.62725 * 248.54951 * 26 14 11 45 45 H 1.09005 * 109.62428 * 9.12774 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6637 -5.4200 -1.2354 13 8 0.6646 -5.4193 1.2386 14 7 2.5203 -6.3927 0.0005 15 6 3.0601 -6.9213 1.2625 16 6 4.5893 -6.8360 1.2114 17 7 5.0738 -7.5084 -0.0013 18 6 6.5400 -7.5997 -0.0026 19 6 6.9862 -8.5012 -1.1247 20 6 7.3465 -7.9514 -2.3407 21 6 7.7559 -8.7895 -3.3662 22 6 7.7883 -10.1555 -3.1292 23 6 7.4146 -10.6324 -1.8873 24 7 7.0336 -9.8050 -0.9336 25 6 4.5872 -6.8365 -1.2137 26 6 3.0579 -6.9219 -1.2620 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8719 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 2.7552 -7.9607 1.3843 33 1 2.6879 -6.3273 2.0973 34 1 5.0103 -7.3238 2.0907 35 1 4.8947 -5.7898 1.1941 36 1 6.9657 -6.6063 -0.1435 37 1 6.8793 -8.0087 0.9490 38 1 7.3095 -6.8824 -2.4899 39 1 8.0437 -8.3881 -4.3266 40 1 8.1025 -10.8378 -3.9051 41 1 7.4366 -11.6949 -1.6948 42 1 4.8927 -5.7904 -1.1973 43 1 5.0067 -7.3246 -2.0933 44 1 2.7528 -7.9613 -1.3829 45 1 2.6842 -6.3283 -2.0964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104109027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:38 Heat of formation + Delta-G solvation = -26.310083 kcal Electronic energy + Delta-G solvation = -27417.683111 eV Core-core repulsion = 23562.385305 eV Total energy + Delta-G solvation = -3855.297805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62064 -38.89493 -36.66439 -35.48638 -35.02595 -33.90872 -32.77933 -31.90153 -31.17734 -31.14621 -27.92873 -25.63521 -24.79045 -24.13216 -23.60656 -22.02858 -21.68744 -20.41470 -18.54561 -17.66473 -17.15870 -16.63527 -16.54704 -16.02222 -15.86074 -15.59250 -15.47899 -15.07574 -14.68803 -14.56694 -14.52793 -14.05921 -13.80303 -13.60172 -13.40849 -13.11362 -12.60783 -12.55694 -12.21480 -12.11663 -11.98639 -11.77599 -11.63050 -11.58309 -11.39144 -11.14532 -11.11578 -10.98197 -10.82339 -10.41373 -10.40843 -10.17406 -9.79618 -9.70181 -9.37563 -9.35639 -8.89317 -8.53025 -8.45362 -6.14799 -4.20434 0.74067 0.75262 0.97271 2.99214 3.22916 3.30229 3.32364 3.33321 3.83560 3.95696 4.28692 4.37199 4.40225 4.52574 4.53984 4.57829 4.70861 4.79547 4.93064 4.97400 5.00914 5.20388 5.20708 5.22544 5.27857 5.32519 5.37330 5.48277 5.50216 5.55653 5.61796 5.69466 5.78400 5.84481 5.85134 5.99013 6.06748 6.35529 6.46461 6.63533 6.77242 6.80228 7.28012 7.34056 7.73231 7.78150 8.15245 8.83118 9.44397 10.96246 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002729 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.016524 B =10258.931663 C =11219.040277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.591 3.409 12 O -0.964 6.964 13 O -0.963 6.963 14 N -1.009 6.009 15 C 0.129 3.871 16 C 0.041 3.959 17 N -0.526 5.526 18 C 0.103 3.897 19 C 0.140 3.860 20 C -0.169 4.169 21 C -0.075 4.075 22 C -0.177 4.177 23 C 0.100 3.900 24 N -0.466 5.466 25 C 0.034 3.966 26 C 0.130 3.870 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.044 0.956 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.299 -19.237 -3.794 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.689 3.311 12 O -0.954 6.954 13 O -0.953 6.953 14 N -0.845 5.845 15 C 0.003 3.997 16 C -0.088 4.088 17 N -0.251 5.251 18 C -0.025 4.025 19 C 0.001 3.999 20 C -0.189 4.189 21 C -0.101 4.101 22 C -0.197 4.197 23 C -0.057 4.057 24 N -0.175 5.175 25 C -0.095 4.095 26 C 0.004 3.996 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.754 -20.152 -2.961 25.750 hybrid contribution 1.715 2.356 -1.002 3.082 sum 17.469 -17.796 -3.962 25.250 Atomic orbital electron populations 1.69969 1.06106 1.27100 1.49613 1.25075 0.94975 0.99550 0.94924 0.86420 0.79886 0.83208 0.77799 1.19692 1.20780 1.20768 1.21026 0.93026 0.89771 1.52055 0.92088 1.18963 0.92695 0.90585 0.98851 1.30504 1.13641 1.18310 1.09778 1.05732 0.74878 0.76321 0.74130 1.93533 1.71269 1.85201 1.45397 1.93537 1.71261 1.85206 1.45306 1.58070 1.59020 1.56017 1.11394 1.21436 0.91930 1.00905 0.85432 1.22546 0.96123 0.97470 0.92656 1.61786 1.07907 1.52928 1.02472 1.20955 0.88202 0.96146 0.97213 1.21066 0.94220 0.90811 0.93753 1.22049 1.01358 1.01381 0.94115 1.21586 0.95808 0.93571 0.99117 1.22163 1.02210 0.96330 0.99010 1.22788 0.94117 0.99789 0.89033 1.67493 1.12267 1.03796 1.33955 1.22634 0.96194 0.97352 0.93338 1.21392 0.91936 1.00739 0.85485 0.92559 0.94885 0.94855 0.86438 0.86494 0.90514 0.88642 0.89328 0.93764 0.92915 0.88725 0.84889 0.84822 0.84890 0.82798 0.93752 0.89816 0.90719 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.18 6.12 37.16 0.23 -10.95 16 11 S 2.59 46.98 5.42 -107.50 -0.58 46.39 16 12 O -0.96 -20.06 16.79 -57.54 -0.97 -21.03 16 13 O -0.96 -19.98 16.79 -57.54 -0.97 -20.94 16 14 N -1.01 -14.02 3.26 -113.23 -0.37 -14.39 16 15 C 0.13 1.53 6.47 -3.60 -0.02 1.50 16 16 C 0.04 0.41 5.62 -3.70 -0.02 0.39 16 17 N -0.53 -5.39 4.62 -235.77 -1.09 -6.48 16 18 C 0.10 0.92 5.29 -4.97 -0.03 0.89 16 19 C 0.14 1.33 5.64 -82.59 -0.47 0.87 16 20 C -0.17 -1.34 8.18 -39.44 -0.32 -1.66 16 21 C -0.07 -0.51 10.18 -39.28 -0.40 -0.91 16 22 C -0.18 -1.18 10.11 -39.44 -0.40 -1.58 16 23 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 24 N -0.47 -4.88 10.27 -9.47 -0.10 -4.98 16 25 C 0.03 0.35 5.38 -3.70 -0.02 0.33 16 26 C 0.13 1.59 6.46 -3.61 -0.02 1.57 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.12 7.20 -51.93 -0.37 0.75 16 34 H 0.09 0.72 7.99 -51.92 -0.41 0.30 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.41 8.02 -51.93 -0.42 0.00 16 37 H 0.09 0.82 7.97 -51.93 -0.41 0.40 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.79 5.97 -51.93 -0.31 0.48 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.14 7.19 -51.93 -0.37 0.77 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -35.87 379.23 -11.78 -47.64 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.92 Total: -0.90 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.22 Total: -21.43 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.82 Total: -51.51 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.93 Total: -41.97 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 46.98 SS G_CDS: -0.58 Total: 46.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.87 -11.78 -47.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104109027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.334 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds