Wall clock time and date at job start Tue Mar 31 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00174 * 2 1 4 4 H 1.48502 * 109.47339 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47256 * 299.99994 * 3 2 1 6 6 H 1.48509 * 109.47305 * 59.99595 * 3 2 1 7 7 C 1.37878 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00045 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47049 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.46795 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54362 * 68.37778 * 11 10 9 13 13 O 1.42103 * 110.54477 * 291.62061 * 11 10 9 14 14 N 1.65606 * 104.44551 * 179.97438 * 11 10 9 15 15 C 1.47082 * 120.87957 * 90.00276 * 14 11 10 16 16 C 1.53244 * 108.51839 * 231.16019 * 15 14 11 17 17 N 1.46888 * 109.34033 * 306.16995 * 16 15 14 18 18 C 1.46906 * 111.00033 * 187.25258 * 17 16 15 19 19 C 1.50701 * 109.46965 * 170.00037 * 18 17 16 20 20 C 1.38229 * 119.61908 * 95.00405 * 19 18 17 21 21 C 1.38624 * 119.16133 * 179.97438 * 20 19 18 22 22 C 1.38674 * 118.42252 * 359.97438 * 21 20 19 23 23 C 1.38183 * 119.16232 * 359.97438 * 22 21 20 24 24 N 1.31853 * 119.62029 * 274.72454 * 19 18 17 25 25 C 1.46900 * 111.27305 * 63.10479 * 17 16 15 26 26 C 1.47075 * 120.88402 * 269.97593 * 14 11 10 27 27 H 0.97007 * 119.99757 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47446 * 59.99479 * 9 7 2 29 29 H 1.09001 * 109.46976 * 299.99182 * 9 7 2 30 30 H 1.08998 * 109.47049 * 59.99693 * 10 9 7 31 31 H 1.09001 * 109.46937 * 299.99663 * 10 9 7 32 32 H 1.08999 * 109.63044 * 111.44968 * 15 14 11 33 33 H 1.09005 * 109.63108 * 350.86631 * 15 14 11 34 34 H 1.09008 * 109.49105 * 186.20661 * 16 15 14 35 35 H 1.09000 * 109.48896 * 66.13307 * 16 15 14 36 36 H 1.08993 * 109.47164 * 289.99980 * 18 17 16 37 37 H 1.08996 * 109.46920 * 50.00014 * 18 17 16 38 38 H 1.07998 * 120.41981 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.78808 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.41807 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.61918 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.48943 * 56.84985 * 25 17 16 43 43 H 1.08993 * 109.49832 * 176.93585 * 25 17 16 44 44 H 1.09000 * 109.62725 * 248.54951 * 26 14 11 45 45 H 1.09005 * 109.62428 * 9.12774 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6637 -5.4200 -1.2354 13 8 0.6646 -5.4193 1.2386 14 7 2.5203 -6.3927 0.0005 15 6 3.0601 -6.9213 1.2625 16 6 4.5893 -6.8360 1.2114 17 7 5.0738 -7.5084 -0.0013 18 6 6.5400 -7.5997 -0.0026 19 6 6.9862 -8.5012 -1.1247 20 6 7.3465 -7.9514 -2.3407 21 6 7.7559 -8.7895 -3.3662 22 6 7.7883 -10.1555 -3.1292 23 6 7.4146 -10.6324 -1.8873 24 7 7.0336 -9.8050 -0.9336 25 6 4.5872 -6.8365 -1.2137 26 6 3.0579 -6.9219 -1.2620 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8904 30 1 2.8719 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 2.7552 -7.9607 1.3843 33 1 2.6879 -6.3273 2.0973 34 1 5.0103 -7.3238 2.0907 35 1 4.8947 -5.7898 1.1941 36 1 6.9657 -6.6063 -0.1435 37 1 6.8793 -8.0087 0.9490 38 1 7.3095 -6.8824 -2.4899 39 1 8.0437 -8.3881 -4.3266 40 1 8.1025 -10.8378 -3.9051 41 1 7.4366 -11.6949 -1.6948 42 1 4.8927 -5.7904 -1.1973 43 1 5.0067 -7.3246 -2.0933 44 1 2.7528 -7.9613 -1.3829 45 1 2.6842 -6.3283 -2.0964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104109027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:37 Heat of formation + Delta-G solvation = -52.946452 kcal Electronic energy + Delta-G solvation = -27418.838150 eV Core-core repulsion = 23562.385305 eV Total energy + Delta-G solvation = -3856.452845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20937 -39.72665 -38.24664 -37.04636 -35.97494 -35.87458 -33.33706 -33.13569 -32.59208 -31.99086 -28.70096 -27.60629 -25.60155 -24.93118 -24.24163 -23.62642 -22.56440 -21.44348 -19.83818 -19.14867 -18.38678 -17.69362 -17.37501 -17.13540 -17.06913 -16.58608 -16.50309 -16.37516 -15.85429 -15.76585 -15.43496 -15.09379 -14.98827 -14.50581 -14.46253 -14.13614 -13.76984 -13.74505 -13.53281 -13.40556 -13.22822 -13.00806 -12.96378 -12.82798 -12.79573 -12.59249 -12.27687 -12.25375 -12.13247 -12.04981 -11.92693 -11.67119 -11.13599 -10.73204 -10.66630 -10.29622 -10.07430 -9.92080 -9.23601 -8.26972 -6.41116 -0.73933 0.19942 0.43714 1.40319 1.40889 1.54060 1.69837 2.37117 2.67934 2.84942 3.06489 3.14023 3.18113 3.38168 3.58793 3.85270 4.00474 4.02080 4.06216 4.12321 4.18141 4.22437 4.27506 4.31680 4.33689 4.47487 4.59703 4.62542 4.70240 4.73814 4.78161 4.83346 4.92023 4.93429 5.03863 5.10542 5.25496 5.26274 5.26966 5.33883 5.58111 5.67352 5.83985 6.03775 6.04872 6.05538 6.72755 7.16085 7.29198 8.85524 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002729 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.016524 B =10258.931663 C =11219.040277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.076 0.924 9 C 0.021 3.979 10 C -0.583 4.583 11 S 2.612 3.388 12 O -0.994 6.994 13 O -0.992 6.992 14 N -0.998 5.998 15 C 0.121 3.879 16 C 0.045 3.955 17 N -0.536 5.536 18 C 0.106 3.894 19 C 0.120 3.880 20 C -0.175 4.175 21 C -0.080 4.080 22 C -0.174 4.174 23 C 0.083 3.917 24 N -0.498 5.498 25 C 0.040 3.960 26 C 0.124 3.876 27 H 0.267 0.733 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.170 0.830 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.271 -19.482 -4.462 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.094 0.906 9 C -0.018 4.018 10 C -0.716 4.716 11 S 2.711 3.289 12 O -0.984 6.984 13 O -0.983 6.983 14 N -0.837 5.837 15 C -0.004 4.004 16 C -0.084 4.084 17 N -0.261 5.261 18 C -0.021 4.021 19 C -0.018 4.018 20 C -0.195 4.195 21 C -0.105 4.105 22 C -0.194 4.194 23 C -0.074 4.074 24 N -0.208 5.208 25 C -0.089 4.089 26 C -0.001 4.001 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.164 0.836 39 H 0.175 0.825 40 H 0.177 0.823 41 H 0.188 0.812 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.740 -20.401 -3.627 27.938 hybrid contribution 0.817 2.283 -0.824 2.561 sum 19.557 -18.117 -4.450 27.028 Atomic orbital electron populations 1.70116 1.08101 1.28270 1.50947 1.26130 0.95854 1.03920 0.94411 0.85260 0.79189 0.77982 0.77787 1.17827 1.20384 1.20414 1.21523 0.93935 0.90696 1.51365 0.90610 1.18817 0.93581 0.93108 0.96263 1.30369 1.12653 1.16495 1.12042 1.04791 0.75010 0.76351 0.72758 1.93486 1.72657 1.85678 1.46607 1.93491 1.72618 1.85676 1.46476 1.57701 1.58405 1.54528 1.13088 1.21679 0.93553 1.00907 0.84236 1.22537 0.94321 0.98099 0.93453 1.61750 1.09014 1.53032 1.02352 1.20951 0.87153 0.96745 0.97296 1.21196 0.95266 0.90766 0.94555 1.22238 1.01145 1.02245 0.93869 1.21958 0.95061 0.93664 0.99859 1.22477 1.01013 0.96886 0.99010 1.23175 0.94243 1.00498 0.89465 1.67451 1.13507 1.04566 1.35306 1.22564 0.94389 0.97927 0.94012 1.21593 0.93504 1.00578 0.84430 0.92391 0.97644 0.97618 0.84169 0.84248 0.90103 0.88691 0.87383 0.93273 0.91694 0.88777 0.83647 0.82462 0.82317 0.81249 0.93126 0.88826 0.90567 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -29.45 9.11 25.60 0.23 -29.22 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.02 1.11 4.98 29.85 0.15 1.25 16 10 C -0.58 -21.84 6.12 71.98 0.44 -21.40 16 11 S 2.61 95.24 5.42 -56.49 -0.31 94.94 16 12 O -0.99 -42.11 16.79 -127.65 -2.14 -44.25 16 13 O -0.99 -41.88 16.79 -127.65 -2.14 -44.02 16 14 N -1.00 -26.75 3.26 -512.15 -1.67 -28.42 16 15 C 0.12 2.71 6.47 86.35 0.56 3.26 16 16 C 0.04 0.79 5.62 86.39 0.49 1.27 16 17 N -0.54 -9.88 4.62 -899.84 -4.16 -14.04 16 18 C 0.11 1.68 5.29 85.56 0.45 2.14 16 19 C 0.12 2.09 5.64 42.55 0.24 2.33 16 20 C -0.17 -2.38 8.18 22.36 0.18 -2.20 16 21 C -0.08 -0.88 10.18 22.47 0.23 -0.65 16 22 C -0.17 -1.90 10.11 22.36 0.23 -1.68 16 23 C 0.08 1.22 11.18 84.67 0.95 2.17 16 24 N -0.50 -9.87 10.27 -183.88 -1.89 -11.76 16 25 C 0.04 0.75 5.38 86.38 0.46 1.22 16 26 C 0.12 2.88 6.46 86.35 0.56 3.43 16 27 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 28 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 31 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.14 7.20 -2.38 -0.02 2.12 16 34 H 0.11 1.48 7.99 -2.38 -0.02 1.46 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.85 8.02 -2.39 -0.02 0.83 16 37 H 0.09 1.47 7.97 -2.39 -0.02 1.45 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 40 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 1.57 5.97 -2.39 -0.01 1.55 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 2.17 7.19 -2.38 -0.02 2.15 16 Total: -1.00 -78.56 379.23 -3.40 -81.96 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.97 Total: 15.08 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 5.63 Total: -37.88 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -7.43 Total: -110.74 kcal Atomic # 8 Polarization: -83.99 SS G_CDS: -4.29 Total: -88.28 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 95.24 SS G_CDS: -0.31 Total: 94.94 kcal Total: -78.56 -3.40 -81.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104109027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.016 kcal (2) G-P(sol) polarization free energy of solvation -78.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds