Wall clock time and date at job start Tue Mar 31 2020 22:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00146 * 65.00260 * 14 11 10 16 16 C 1.50703 * 109.47244 * 164.99927 * 15 14 11 17 17 C 1.38884 * 120.33263 * 90.00166 * 16 15 14 18 18 C 1.38301 * 118.50475 * 179.97438 * 17 16 15 19 19 C 1.39144 * 119.09641 * 359.97438 * 18 17 16 20 20 N 1.39000 * 119.70527 * 179.97438 * 19 18 17 21 21 C 1.48533 * 110.99722 * 62.60430 * 20 19 18 22 22 C 1.54938 * 103.22458 * 159.72041 * 21 20 19 23 23 C 1.54607 * 102.92235 * 322.58623 * 22 21 20 24 24 C 1.47900 * 110.99740 * 180.02562 * 20 19 18 25 25 N 1.32396 * 120.58692 * 0.02809 * 19 18 17 26 26 C 1.31978 * 121.62372 * 359.67608 * 25 19 18 27 27 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 29 29 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 30 30 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 31 31 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 32 32 H 0.97001 * 120.00004 * 244.99733 * 14 11 10 33 33 H 1.09006 * 109.47217 * 284.99705 * 15 14 11 34 34 H 1.08999 * 109.47705 * 44.99940 * 15 14 11 35 35 H 1.08003 * 120.74947 * 359.94806 * 17 16 15 36 36 H 1.07995 * 120.45493 * 179.97438 * 18 17 16 37 37 H 1.08992 * 110.67067 * 278.15093 * 21 20 19 38 38 H 1.09004 * 110.66566 * 41.28849 * 21 20 19 39 39 H 1.08999 * 110.72353 * 204.23032 * 22 21 20 40 40 H 1.08999 * 110.87936 * 81.01065 * 22 21 20 41 41 H 1.08998 * 110.30775 * 263.04368 * 23 22 21 42 42 H 1.08997 * 110.30443 * 140.87159 * 23 22 21 43 43 H 1.08996 * 109.91815 * 333.51162 * 24 20 19 44 44 H 1.09005 * 109.91757 * 94.80492 * 24 20 19 45 45 H 1.07998 * 119.57268 * 180.29505 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 7 2.5206 -6.3926 -0.0005 15 6 3.4182 -6.5229 1.1500 16 6 4.1383 -7.8448 1.0782 17 6 5.3547 -7.9458 0.4155 18 6 5.9830 -9.1771 0.3733 19 6 5.3789 -10.2666 0.9930 20 7 5.9991 -11.5101 0.9579 21 6 7.3107 -11.4706 1.6538 22 6 7.5860 -12.9608 1.9761 23 6 6.1827 -13.5022 2.3338 24 6 5.1936 -12.5244 1.6719 25 7 4.2182 -10.1297 1.6149 26 6 3.5989 -8.9658 1.6760 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8904 32 1 2.6188 -6.9857 -0.7618 33 1 4.1460 -5.7115 1.1368 34 1 2.8375 -6.4752 2.0712 35 1 5.7997 -7.0823 -0.0565 36 1 6.9297 -9.2914 -0.1338 37 1 8.0829 -11.0701 0.9969 38 1 7.2423 -10.8849 2.5706 39 1 8.2630 -13.0531 2.8254 40 1 7.9887 -13.4786 1.1056 41 1 6.0435 -13.5074 3.4149 42 1 6.0500 -14.5056 1.9295 43 1 4.5813 -12.0429 2.4342 44 1 4.5590 -13.0593 0.9653 45 1 2.6555 -8.8907 2.1962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104110581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:08 Heat of formation + Delta-G solvation = -32.125573 kcal Electronic energy + Delta-G solvation = -26277.636053 eV Core-core repulsion = 22422.086069 eV Total energy + Delta-G solvation = -3855.549984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10064 -38.82088 -36.62336 -35.71126 -35.40071 -33.90696 -32.85021 -32.66772 -31.17683 -29.70686 -29.35350 -25.64190 -25.60178 -24.08435 -22.83475 -21.69378 -21.32560 -21.00695 -18.98638 -17.99300 -17.55954 -17.02831 -16.79514 -16.19677 -16.12872 -15.42426 -15.08519 -15.03981 -14.69519 -14.54881 -14.52063 -14.05947 -13.68331 -13.48140 -13.35295 -13.17101 -12.92324 -12.53288 -12.50495 -12.18141 -11.80868 -11.76575 -11.63346 -11.60247 -11.53566 -11.47245 -11.10906 -11.02433 -10.97301 -10.42597 -10.40374 -10.21729 -10.09058 -9.86758 -9.68512 -9.48729 -9.04708 -8.52108 -8.45881 -6.13993 -4.19564 0.60697 0.91063 1.01239 3.05617 3.23357 3.24010 3.31383 3.34446 3.57417 3.99238 4.16447 4.22386 4.35504 4.38410 4.46164 4.49550 4.64982 4.71219 4.77009 4.85347 4.85716 5.00009 5.20212 5.21365 5.22368 5.29508 5.35171 5.38285 5.52076 5.53502 5.59874 5.62039 5.63863 5.67764 5.78546 5.88109 5.98785 6.19745 6.21804 6.46938 6.80137 7.04068 7.29023 7.35025 7.67316 7.79084 8.15912 8.84096 9.45336 10.97025 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.001983 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.464351 B =14115.592593 C =14807.062226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.593 3.407 12 O -0.966 6.966 13 O -0.966 6.966 14 N -1.125 6.125 15 C 0.164 3.836 16 C -0.170 4.170 17 C -0.039 4.039 18 C -0.181 4.181 19 C 0.302 3.698 20 N -0.464 5.464 21 C 0.044 3.956 22 C -0.124 4.124 23 C -0.134 4.134 24 C 0.034 3.966 25 N -0.519 5.519 26 C 0.144 3.856 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.413 0.587 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.705 -24.306 4.190 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.723 4.723 11 S 2.691 3.309 12 O -0.956 6.956 13 O -0.956 6.956 14 N -0.882 5.882 15 C 0.037 3.963 16 C -0.174 4.174 17 C -0.066 4.066 18 C -0.203 4.203 19 C 0.070 3.930 20 N -0.182 5.182 21 C -0.082 4.082 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.092 4.092 25 N -0.232 5.232 26 C -0.014 4.014 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.246 0.754 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 15.293 -25.196 4.214 29.773 hybrid contribution 1.325 1.922 -0.156 2.340 sum 16.618 -23.273 4.058 28.884 Atomic orbital electron populations 1.69965 1.06102 1.27092 1.49614 1.25074 0.94979 0.99564 0.94930 0.86414 0.79894 0.83200 0.77762 1.19678 1.20815 1.20806 1.21038 0.93079 0.89773 1.52055 0.92003 1.18975 0.92723 0.90575 0.98949 1.30443 1.13716 1.18053 1.10051 1.05563 0.74639 0.76560 0.74151 1.93540 1.71333 1.84967 1.45735 1.93560 1.71540 1.85309 1.45222 1.55916 1.52862 1.52345 1.27095 1.20036 0.92627 0.93849 0.89756 1.20743 0.96880 0.97030 1.02796 1.21471 0.93259 0.97541 0.94322 1.21537 1.02727 0.92357 1.03684 1.20016 0.90974 0.90062 0.91972 1.61986 1.04379 1.02922 1.48926 1.23318 0.89704 0.97890 0.97290 1.22515 0.97217 0.94416 1.02071 1.22468 0.94416 0.99525 1.00783 1.22901 0.95949 0.92158 0.98241 1.67591 1.10236 1.26905 1.18464 1.22589 0.98074 0.86407 0.94370 0.92578 0.94806 0.94771 0.86298 0.86089 0.75394 0.90613 0.89079 0.84121 0.84578 0.89189 0.92656 0.90469 0.90346 0.91163 0.90719 0.89864 0.90062 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.70 6.01 37.16 0.22 -10.48 16 11 S 2.59 44.12 5.46 -107.50 -0.59 43.53 16 12 O -0.97 -19.16 17.49 -57.54 -1.01 -20.17 16 13 O -0.97 -19.65 18.08 -57.54 -1.04 -20.69 16 14 N -1.13 -13.67 5.88 -11.66 -0.07 -13.74 16 15 C 0.16 1.67 6.28 -5.19 -0.03 1.64 16 16 C -0.17 -1.65 5.29 -104.46 -0.55 -2.21 16 17 C -0.04 -0.34 9.85 -39.32 -0.39 -0.72 16 18 C -0.18 -1.60 9.46 -39.22 -0.37 -1.97 16 19 C 0.30 3.10 6.21 -155.02 -0.96 2.14 16 20 N -0.46 -4.18 5.29 -169.22 -0.90 -5.07 16 21 C 0.04 0.29 6.05 -1.90 -0.01 0.27 16 22 C -0.12 -0.63 7.06 -24.86 -0.18 -0.81 16 23 C -0.13 -0.78 6.93 -25.35 -0.18 -0.96 16 24 C 0.03 0.29 6.35 -2.74 -0.02 0.27 16 25 N -0.52 -5.85 8.15 -12.44 -0.10 -5.95 16 26 C 0.14 1.52 10.85 -17.57 -0.19 1.33 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 31 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 32 H 0.41 4.50 8.61 -34.47 -0.30 4.20 16 33 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.09 0.94 7.64 -51.93 -0.40 0.55 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 36 H 0.14 0.95 8.05 -52.49 -0.42 0.52 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.39 8.00 -51.93 -0.42 -0.03 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.80 6.50 -51.93 -0.34 0.47 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -35.76 384.86 -12.29 -48.05 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.90 Total: 1.70 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -3.20 Total: -23.92 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.33 Total: -50.28 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -2.05 Total: -40.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 44.12 SS G_CDS: -0.59 Total: 43.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.76 -12.29 -48.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104110581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.922 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds