Wall clock time and date at job start Tue Mar 31 2020 22:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 15 15 C 1.46496 * 120.00146 * 65.00260 * 14 11 10 16 16 C 1.50703 * 109.47244 * 164.99927 * 15 14 11 17 17 C 1.38884 * 120.33263 * 90.00166 * 16 15 14 18 18 C 1.38301 * 118.50475 * 179.97438 * 17 16 15 19 19 C 1.39144 * 119.09641 * 359.97438 * 18 17 16 20 20 N 1.39000 * 119.70527 * 179.97438 * 19 18 17 21 21 C 1.48533 * 110.99722 * 62.60430 * 20 19 18 22 22 C 1.54938 * 103.22458 * 159.72041 * 21 20 19 23 23 C 1.54607 * 102.92235 * 322.58623 * 22 21 20 24 24 C 1.47900 * 110.99740 * 180.02562 * 20 19 18 25 25 N 1.32396 * 120.58692 * 0.02809 * 19 18 17 26 26 C 1.31978 * 121.62372 * 359.67608 * 25 19 18 27 27 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 29 29 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 30 30 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 31 31 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 32 32 H 0.97001 * 120.00004 * 244.99733 * 14 11 10 33 33 H 1.09006 * 109.47217 * 284.99705 * 15 14 11 34 34 H 1.08999 * 109.47705 * 44.99940 * 15 14 11 35 35 H 1.08003 * 120.74947 * 359.94806 * 17 16 15 36 36 H 1.07995 * 120.45493 * 179.97438 * 18 17 16 37 37 H 1.08992 * 110.67067 * 278.15093 * 21 20 19 38 38 H 1.09004 * 110.66566 * 41.28849 * 21 20 19 39 39 H 1.08999 * 110.72353 * 204.23032 * 22 21 20 40 40 H 1.08999 * 110.87936 * 81.01065 * 22 21 20 41 41 H 1.08998 * 110.30775 * 263.04368 * 23 22 21 42 42 H 1.08997 * 110.30443 * 140.87159 * 23 22 21 43 43 H 1.08996 * 109.91815 * 333.51162 * 24 20 19 44 44 H 1.09005 * 109.91757 * 94.80492 * 24 20 19 45 45 H 1.07998 * 119.57268 * 180.29505 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 7 2.5206 -6.3926 -0.0005 15 6 3.4182 -6.5229 1.1500 16 6 4.1383 -7.8448 1.0782 17 6 5.3547 -7.9458 0.4155 18 6 5.9830 -9.1771 0.3733 19 6 5.3789 -10.2666 0.9930 20 7 5.9991 -11.5101 0.9579 21 6 7.3107 -11.4706 1.6538 22 6 7.5860 -12.9608 1.9761 23 6 6.1827 -13.5022 2.3338 24 6 5.1936 -12.5244 1.6719 25 7 4.2182 -10.1297 1.6149 26 6 3.5989 -8.9658 1.6760 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8904 32 1 2.6188 -6.9857 -0.7618 33 1 4.1460 -5.7115 1.1368 34 1 2.8375 -6.4752 2.0712 35 1 5.7997 -7.0823 -0.0565 36 1 6.9297 -9.2914 -0.1338 37 1 8.0829 -11.0701 0.9969 38 1 7.2423 -10.8849 2.5706 39 1 8.2630 -13.0531 2.8254 40 1 7.9887 -13.4786 1.1056 41 1 6.0435 -13.5074 3.4149 42 1 6.0500 -14.5056 1.9295 43 1 4.5813 -12.0429 2.4342 44 1 4.5590 -13.0593 0.9653 45 1 2.6555 -8.8907 2.1962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104110581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:07 Heat of formation + Delta-G solvation = -58.180585 kcal Electronic energy + Delta-G solvation = -26278.765883 eV Core-core repulsion = 22422.086069 eV Total energy + Delta-G solvation = -3856.679814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78179 -39.44493 -38.12440 -36.99368 -36.54145 -35.86077 -33.53103 -33.37603 -33.08816 -30.43352 -29.89746 -27.55973 -26.41739 -24.76627 -23.58494 -23.47236 -21.92653 -21.57593 -20.30295 -19.10190 -18.65354 -18.31862 -17.72648 -17.53431 -16.99148 -16.66962 -16.51212 -16.22120 -15.72100 -15.46229 -15.34118 -15.01838 -14.69516 -14.52191 -14.34091 -14.15032 -13.78676 -13.70046 -13.61678 -13.21545 -13.15850 -13.08230 -13.00190 -12.93433 -12.74460 -12.47115 -12.26053 -12.20825 -12.11580 -12.07743 -11.70734 -11.47780 -11.16239 -10.93346 -10.78512 -10.63568 -10.49720 -10.25254 -9.15769 -8.24081 -6.37585 -0.67524 0.06078 0.31284 1.42569 1.42858 1.56022 1.92200 2.39504 2.53576 2.82149 2.87890 3.09770 3.31343 3.39077 3.64283 3.68009 3.85327 3.97805 4.03514 4.04401 4.08790 4.20288 4.23656 4.31868 4.48663 4.51877 4.57187 4.74982 4.80650 4.82943 4.87227 4.88910 4.92263 5.01191 5.03747 5.12790 5.22322 5.31374 5.32524 5.33118 5.52399 5.62565 5.71337 6.08131 6.10412 6.11934 6.77003 6.95081 7.32608 8.88276 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025577 B = 0.001983 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.464351 B =14115.592593 C =14807.062226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.006 4.006 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.017 3.983 10 C -0.585 4.585 11 S 2.622 3.378 12 O -0.997 6.997 13 O -1.002 7.002 14 N -1.106 6.106 15 C 0.156 3.844 16 C -0.172 4.172 17 C -0.034 4.034 18 C -0.182 4.182 19 C 0.287 3.713 20 N -0.472 5.472 21 C 0.042 3.958 22 C -0.119 4.119 23 C -0.130 4.130 24 C 0.032 3.968 25 N -0.541 5.541 26 C 0.128 3.872 27 H 0.266 0.734 28 H 0.005 0.995 29 H 0.008 0.992 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.422 0.578 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.192 -24.490 4.073 32.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.096 0.904 9 C -0.022 4.022 10 C -0.718 4.718 11 S 2.719 3.281 12 O -0.986 6.986 13 O -0.992 6.992 14 N -0.867 5.867 15 C 0.031 3.969 16 C -0.177 4.177 17 C -0.060 4.060 18 C -0.204 4.204 19 C 0.055 3.945 20 N -0.191 5.191 21 C -0.083 4.083 22 C -0.156 4.156 23 C -0.168 4.168 24 C -0.095 4.095 25 N -0.255 5.255 26 C -0.030 4.030 27 H 0.075 0.925 28 H 0.023 0.977 29 H 0.026 0.974 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.258 0.742 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 18.797 -25.390 4.095 31.855 hybrid contribution 0.270 1.851 -0.107 1.873 sum 19.067 -23.539 3.988 30.554 Atomic orbital electron populations 1.70114 1.08081 1.28154 1.51130 1.26124 0.95843 1.03910 0.94565 0.85268 0.79268 0.78098 0.77624 1.17733 1.20642 1.20542 1.21573 0.94083 0.90727 1.51058 0.90356 1.18846 0.93744 0.93207 0.96384 1.30317 1.12715 1.16023 1.12709 1.04406 0.74602 0.76479 0.72592 1.93501 1.72693 1.85454 1.46996 1.93505 1.73139 1.85882 1.46718 1.55407 1.52318 1.50765 1.28226 1.20313 0.92783 0.95265 0.88575 1.20658 0.97428 0.96236 1.03333 1.21777 0.92510 0.98324 0.93385 1.21794 1.03389 0.91956 1.03219 1.20372 0.90945 0.91048 0.92086 1.62047 1.05248 1.02531 1.49268 1.23431 0.88813 0.98940 0.97149 1.22535 0.96869 0.93269 1.02975 1.22460 0.94270 0.99263 1.00839 1.22875 0.96476 0.92517 0.97620 1.67586 1.11118 1.27390 1.19440 1.22729 0.98420 0.86837 0.95025 0.92513 0.97685 0.97413 0.83442 0.83692 0.74202 0.87676 0.89405 0.81425 0.82539 0.87741 0.93295 0.88819 0.89768 0.90740 0.89820 0.91636 0.91093 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.54 -28.91 9.11 25.60 0.23 -28.67 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 0.87 4.98 29.85 0.15 1.02 16 10 C -0.59 -20.41 6.01 71.98 0.43 -19.98 16 11 S 2.62 87.91 5.46 -56.49 -0.31 87.60 16 12 O -1.00 -39.77 17.49 -127.65 -2.23 -42.00 16 13 O -1.00 -41.00 18.08 -127.65 -2.31 -43.31 16 14 N -1.11 -24.80 5.88 -190.79 -1.12 -25.92 16 15 C 0.16 2.81 6.28 85.64 0.54 3.35 16 16 C -0.17 -3.01 5.29 -19.76 -0.10 -3.11 16 17 C -0.03 -0.48 9.85 22.44 0.22 -0.25 16 18 C -0.18 -2.78 9.46 22.50 0.21 -2.57 16 19 C 0.29 5.64 6.21 133.07 0.83 6.47 16 20 N -0.47 -8.07 5.29 -689.29 -3.65 -11.72 16 21 C 0.04 0.47 6.05 86.65 0.52 1.00 16 22 C -0.12 -0.97 7.06 31.80 0.22 -0.74 16 23 C -0.13 -1.37 6.93 31.49 0.22 -1.15 16 24 C 0.03 0.54 6.35 86.46 0.55 1.09 16 25 N -0.54 -12.19 8.15 -193.26 -1.57 -13.77 16 26 C 0.13 2.65 10.85 84.62 0.92 3.57 16 27 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.15 4.26 8.14 -2.39 -0.02 4.24 16 31 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 32 H 0.42 8.35 8.61 -96.74 -0.83 7.52 16 33 H 0.11 1.33 8.09 -2.38 -0.02 1.31 16 34 H 0.09 1.68 7.64 -2.39 -0.02 1.66 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.16 1.69 8.05 -2.91 -0.02 1.66 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.62 8.00 -2.39 -0.02 0.60 16 39 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 1.32 6.50 -2.39 -0.02 1.30 16 44 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -79.09 384.86 -3.32 -82.41 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.16 Total: 18.10 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 5.40 Total: -39.88 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -6.06 Total: -107.59 kcal Atomic # 8 Polarization: -80.77 SS G_CDS: -4.54 Total: -85.31 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 87.91 SS G_CDS: -0.31 Total: 87.60 kcal Total: -79.09 -3.32 -82.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104110581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.228 kcal (2) G-P(sol) polarization free energy of solvation -79.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds