Wall clock time and date at job start Tue Mar 31 2020 23:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 125.89983 * 2 1 4 4 C 1.35316 * 107.92509 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.12733 * 180.02562 * 4 3 2 6 6 N 1.34945 * 107.74288 * 0.02562 * 4 3 2 7 7 C 1.46502 * 126.03825 * 179.97438 * 6 4 3 8 8 C 1.53006 * 109.47297 * 89.99415 * 7 6 4 9 9 H 1.09001 * 109.55256 * 305.13182 * 8 7 6 10 10 C 1.53296 * 109.51171 * 185.00094 * 8 7 6 11 11 N 1.47151 * 108.38396 * 187.77404 * 10 8 7 12 12 C 1.34769 * 120.98149 * 230.55826 * 11 10 8 13 13 O 1.21276 * 120.00358 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99792 * 180.02562 * 12 11 10 15 15 S 1.81006 * 109.47337 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00403 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99474 * 0.02562 * 16 15 14 18 18 C 1.38795 * 120.00444 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99449 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00179 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46897 * 90.00450 * 20 18 16 22 22 H 1.48502 * 109.47130 * 210.00167 * 20 18 16 23 23 H 1.48493 * 109.47503 * 330.00448 * 20 18 16 24 24 C 1.47158 * 118.03392 * 50.53618 * 11 10 8 25 25 C 1.53298 * 108.38580 * 309.46763 * 24 11 10 26 26 O 1.42956 * 109.22271 * 52.29529 * 25 24 11 27 27 N 1.30836 * 125.90246 * 180.30649 * 2 1 3 28 28 H 1.09000 * 109.47108 * 90.00051 * 1 2 3 29 29 H 1.09002 * 109.46800 * 210.00072 * 1 2 3 30 30 H 1.08999 * 109.46962 * 329.99248 * 1 2 3 31 31 H 1.08002 * 126.03928 * 0.02562 * 3 2 1 32 32 H 1.08996 * 109.47522 * 269.97199 * 5 4 3 33 33 H 1.08993 * 109.47228 * 29.97765 * 5 4 3 34 34 H 1.09006 * 109.46568 * 149.97607 * 5 4 3 35 35 H 1.09002 * 109.46622 * 329.99492 * 7 6 4 36 36 H 1.09003 * 109.47341 * 209.99847 * 7 6 4 37 37 H 1.09004 * 109.68264 * 307.50193 * 10 8 7 38 38 H 1.09005 * 109.67804 * 68.05432 * 10 8 7 39 39 H 1.08999 * 109.47535 * 299.99932 * 14 12 11 40 40 H 1.09000 * 109.47518 * 60.00425 * 14 12 11 41 41 H 0.97002 * 119.99464 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.67763 * 69.18441 * 24 11 10 43 43 H 1.08991 * 109.68056 * 189.74082 * 24 11 10 44 44 H 1.08993 * 109.51172 * 172.23131 * 25 24 11 45 45 H 1.09005 * 109.50828 * 292.32410 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7154 -0.0006 5 6 4.8350 1.5990 -0.0002 6 7 3.6088 -0.6340 -0.0015 7 6 4.7900 -1.5007 -0.0029 8 6 5.2022 -1.8033 1.4392 9 1 5.3484 -0.8687 1.9806 10 6 6.5085 -2.6056 1.4406 11 7 6.7829 -3.0431 2.8185 12 6 7.9865 -2.8316 3.3869 13 8 8.8626 -2.2727 2.7616 14 6 8.2436 -3.2894 4.7994 15 16 9.9384 -2.8648 5.2723 16 6 9.9643 -3.4954 6.9173 17 1 9.0854 -3.9710 7.3272 18 6 11.1143 -3.3821 7.6861 19 7 12.1856 -2.8030 7.1862 20 14 11.1415 -4.0500 9.4303 21 1 11.5922 -5.4649 9.4115 22 1 12.0769 -3.2434 10.2547 23 1 9.7771 -3.9729 10.0112 24 6 5.7042 -3.7180 3.5577 25 6 4.4371 -2.8616 3.4530 26 8 4.1784 -2.5700 2.0776 27 7 2.2742 -1.0598 -0.0057 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.9923 2.1598 0.0004 32 1 5.1294 1.8124 -1.0278 33 1 4.6075 2.5328 0.5139 34 1 5.6511 1.0908 0.5135 35 1 5.6090 -0.9977 -0.5170 36 1 4.5561 -2.4329 -0.5172 37 1 6.4055 -3.4761 0.7926 38 1 7.3255 -1.9775 1.0853 39 1 7.5435 -2.7969 5.4742 40 1 8.1093 -4.3694 4.8615 41 1 12.9892 -2.7235 7.7236 42 1 5.5202 -4.7004 3.1228 43 1 5.9885 -3.8266 4.6042 44 1 3.5930 -3.4073 3.8746 45 1 4.5801 -1.9312 4.0026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110898771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:54 Heat of formation + Delta-G solvation = -25.984726 kcal Electronic energy + Delta-G solvation = -26887.851912 eV Core-core repulsion = 23032.568215 eV Total energy + Delta-G solvation = -3855.283697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25523 -41.39687 -39.49656 -36.07792 -35.49389 -34.60423 -33.53765 -32.45848 -31.11999 -30.19349 -28.52513 -27.86505 -27.67054 -26.09192 -24.47062 -22.79766 -21.28197 -20.79894 -20.17776 -19.60262 -18.37627 -17.93341 -17.54983 -17.08597 -16.91651 -16.86467 -16.45055 -16.04824 -15.82058 -15.53786 -14.98669 -14.80010 -14.75908 -14.60486 -14.49579 -14.13131 -13.93422 -13.62342 -13.61022 -13.36058 -13.29047 -13.16580 -13.07454 -12.91054 -12.78219 -12.68899 -12.62626 -12.41562 -11.87943 -11.74872 -11.38896 -11.32478 -11.16102 -10.97629 -10.30557 -10.00928 -9.72980 -9.39073 -8.70021 -8.36787 -6.15247 0.91139 1.18478 1.39738 1.41366 1.44334 1.52470 1.58183 1.87357 1.94401 2.24867 2.51448 2.97634 3.17583 3.45021 3.59374 3.62166 3.71040 3.76009 3.82643 3.88297 4.06023 4.11791 4.19681 4.23925 4.30516 4.36793 4.41181 4.48859 4.54250 4.63097 4.67746 4.69881 4.79933 4.81711 4.85119 4.98228 5.03368 5.11091 5.26502 5.34893 5.40002 5.82770 5.96178 6.08385 6.16051 6.17906 6.85640 6.98723 7.04747 8.72318 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.002170 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.012119 B =12901.291327 C =13225.974812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.053 3.947 3 C -0.289 4.289 4 C 0.076 3.924 5 C -0.094 4.094 6 N -0.371 5.371 7 C 0.141 3.859 8 C 0.073 3.927 9 H 0.055 0.945 10 C 0.088 3.912 11 N -0.613 5.613 12 C 0.538 3.462 13 O -0.557 6.557 14 C -0.126 4.126 15 S -0.147 6.147 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 C 0.070 3.930 25 C 0.051 3.949 26 O -0.375 6.375 27 N -0.320 5.320 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.034 4.504 -14.199 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C -0.318 4.318 4 C -0.050 4.050 5 C -0.152 4.152 6 N -0.154 5.154 7 C 0.019 3.981 8 C 0.013 3.987 9 H 0.073 0.927 10 C -0.035 4.035 11 N -0.348 5.348 12 C 0.326 3.674 13 O -0.435 6.435 14 C -0.277 4.277 15 S 0.080 5.920 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.052 4.052 25 C -0.026 4.026 26 O -0.294 6.294 27 N -0.142 5.142 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.155 0.845 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.149 0.851 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.580 3.953 -15.207 26.694 hybrid contribution -0.253 -0.057 1.914 1.932 sum -21.834 3.897 -13.292 25.857 Atomic orbital electron populations 1.20239 0.84972 1.03802 1.03652 1.22916 0.98362 0.90901 0.99152 1.21426 0.91114 1.00416 1.18849 1.21674 0.98528 0.84644 1.00198 1.20592 0.91784 0.98207 1.04628 1.48483 1.05098 1.04286 1.57491 1.21810 0.85134 0.96354 0.94769 1.22796 0.87491 0.93896 0.94492 0.92724 1.22237 0.97337 1.00786 0.83181 1.48077 1.12076 1.59541 1.15095 1.20116 0.81654 0.77877 0.87724 1.90678 1.44874 1.43255 1.64704 1.23372 1.02889 1.05480 0.95938 1.85564 1.10511 1.78761 1.17142 1.23185 1.02424 1.44680 0.99096 0.89876 1.26121 0.94029 0.95010 1.03973 1.70179 1.03274 1.42045 1.39158 0.84959 0.78804 0.78212 0.76059 1.19314 1.20325 1.18176 1.22705 0.86489 0.97116 0.98928 1.23081 0.98028 0.98961 0.82538 1.88066 1.43682 1.73117 1.24517 1.77339 0.87075 1.23657 1.26130 0.89586 0.91408 0.88901 0.82082 0.88396 0.88462 0.91084 0.84530 0.87189 0.88560 0.88420 0.87437 0.87273 0.91966 0.88502 0.87595 0.85117 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.45 71.24 0.74 -0.20 16 2 C 0.05 1.13 7.22 43.10 0.31 1.44 16 3 C -0.29 -5.54 10.65 21.99 0.23 -5.30 16 4 C 0.08 1.44 6.93 41.40 0.29 1.73 16 5 C -0.09 -1.13 9.90 71.24 0.71 -0.43 16 6 N -0.37 -7.97 3.56 -334.68 -1.19 -9.16 16 7 C 0.14 2.35 5.74 86.38 0.50 2.85 16 8 C 0.07 1.46 3.02 30.70 0.09 1.55 16 9 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.09 1.89 5.93 86.35 0.51 2.40 16 11 N -0.61 -16.12 3.02 -817.35 -2.47 -18.58 16 12 C 0.54 19.58 7.73 87.66 0.68 20.25 16 13 O -0.56 -24.85 15.33 -3.02 -0.05 -24.90 16 14 C -0.13 -4.88 4.53 71.24 0.32 -4.56 16 15 S -0.15 -8.01 20.57 -56.49 -1.16 -9.18 16 16 C -0.55 -30.63 9.50 67.95 0.65 -29.99 16 17 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.21 13.22 21.65 0.29 -54.92 16 20 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 24 C 0.07 1.36 6.54 86.35 0.56 1.93 16 25 C 0.05 0.95 6.99 72.08 0.50 1.45 16 26 O -0.38 -8.38 10.33 -148.98 -1.54 -9.92 16 27 N -0.32 -8.16 12.58 -47.39 -0.60 -8.76 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.88 7.72 -2.38 -0.02 0.86 16 35 H 0.14 1.48 7.66 -2.39 -0.02 1.46 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 2.29 7.08 -2.38 -0.02 2.28 16 39 H 0.11 3.77 7.66 -2.40 -0.02 3.75 16 40 H 0.11 3.83 8.02 -2.40 -0.02 3.81 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 1.96 6.05 -2.39 -0.01 1.95 16 44 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -81.21 388.01 2.86 -78.36 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.98 Total: 17.74 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 6.56 Total: -5.65 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -3.97 Total: -91.42 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.59 Total: -34.82 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -81.21 2.86 -78.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110898771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.375 kcal (2) G-P(sol) polarization free energy of solvation -81.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds