Wall clock time and date at job start Tue Mar 31 2020 22:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48510 * 109.46807 * 240.00198 * 3 2 1 5 5 H 1.48502 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47377 * 120.00061 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00264 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97153 * 125.01495 * 10 9 7 12 12 C 1.35236 * 107.85765 * 179.69248 * 11 10 9 13 13 C 1.40412 * 107.86792 * 0.43350 * 12 11 10 14 14 N 1.40153 * 125.97146 * 179.83091 * 13 12 11 15 15 C 1.34774 * 120.00256 * 359.71116 * 14 13 12 16 16 O 1.21294 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00154 * 180.02562 * 15 14 13 18 18 S 1.81399 * 109.47188 * 179.97438 * 17 15 14 19 19 C 1.81400 * 102.99943 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47070 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.48673 * 304.97044 * 20 19 18 22 22 C 1.53097 * 109.47971 * 184.94472 * 20 19 18 23 23 C 1.53180 * 109.21119 * 182.44174 * 22 20 19 24 24 C 1.53177 * 109.03525 * 56.88485 * 23 22 20 25 25 C 1.53098 * 109.21356 * 303.11207 * 24 23 22 26 26 O 1.42898 * 109.48269 * 65.00251 * 20 19 18 27 27 N 1.31219 * 108.05272 * 359.56353 * 13 12 11 28 28 H 0.96999 * 120.00322 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46944 * 59.99942 * 9 7 2 30 30 H 1.09000 * 109.47130 * 299.99926 * 9 7 2 31 31 H 1.08000 * 126.07121 * 359.94536 * 11 10 9 32 32 H 1.08000 * 126.06551 * 180.25787 * 12 11 10 33 33 H 0.97002 * 120.00265 * 179.71433 * 14 13 12 34 34 H 1.09004 * 109.46976 * 59.99953 * 17 15 14 35 35 H 1.09002 * 109.47019 * 300.00131 * 17 15 14 36 36 H 1.09004 * 109.47140 * 60.00621 * 19 18 17 37 37 H 1.08998 * 109.47558 * 300.00020 * 19 18 17 38 38 H 1.09002 * 109.52138 * 302.31194 * 22 20 19 39 39 H 1.09003 * 109.52113 * 62.50105 * 22 20 19 40 40 H 1.09005 * 109.49724 * 297.04659 * 23 22 20 41 41 H 1.09005 * 109.59319 * 176.78366 * 23 22 20 42 42 H 1.09002 * 109.52487 * 183.17418 * 24 23 22 43 43 H 1.09004 * 109.52023 * 63.05037 * 24 23 22 44 44 H 1.08999 * 109.47354 * 177.55660 * 25 24 23 45 45 H 1.08998 * 109.47939 * 297.58076 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2420 -4.6225 0.8951 12 6 3.2563 -5.4463 0.5468 13 6 3.8683 -4.9152 -0.5999 14 7 4.9638 -5.4663 -1.2785 15 6 5.5276 -6.6068 -0.8340 16 8 5.0874 -7.1561 0.1538 17 6 6.7059 -7.1991 -1.5635 18 16 7.2333 -8.7194 -0.7263 19 6 8.6355 -9.2749 -1.7343 20 6 9.2024 -10.5702 -1.1498 21 1 9.4560 -10.4155 -0.1011 22 6 10.4596 -10.9729 -1.9251 23 6 10.9871 -12.3016 -1.3749 24 6 9.8806 -13.3565 -1.4708 25 6 8.6458 -12.8618 -0.7130 26 8 8.2261 -11.6083 -1.2559 27 7 3.2318 -3.8157 -0.9283 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 1.5781 -4.7521 1.7370 32 1 3.5462 -6.3506 1.0612 33 1 5.3161 -5.0268 -2.0683 34 1 7.5278 -6.4832 -1.5677 35 1 6.4194 -7.4295 -2.5896 36 1 9.4092 -8.5071 -1.7350 37 1 8.3003 -9.4539 -2.7559 38 1 10.2150 -11.0884 -2.9810 39 1 11.2217 -10.2022 -1.8089 40 1 11.2794 -12.1735 -0.3326 41 1 11.8490 -12.6230 -1.9597 42 1 10.2286 -14.2906 -1.0297 43 1 9.6241 -13.5212 -2.5173 44 1 7.8410 -13.5898 -0.8148 45 1 8.8921 -12.7373 0.3415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117714846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:57 Heat of formation + Delta-G solvation = -6.025680 kcal Electronic energy + Delta-G solvation = -25418.497556 eV Core-core repulsion = 21564.079349 eV Total energy + Delta-G solvation = -3854.418208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68511 -39.79872 -39.20335 -34.79107 -34.06804 -33.38912 -33.26340 -31.37935 -29.94796 -29.29049 -28.30553 -26.56191 -24.71589 -23.27090 -22.81104 -21.72464 -20.73561 -20.27802 -19.58066 -17.22888 -16.86942 -16.72111 -16.54513 -16.46480 -16.25343 -15.75728 -15.30727 -15.06616 -14.95941 -14.35972 -14.18215 -14.14504 -13.85749 -13.56728 -13.51454 -13.06188 -12.83051 -12.80775 -12.33018 -12.30860 -12.21807 -11.77107 -11.71491 -11.57330 -11.23260 -11.06892 -10.86914 -10.75276 -10.47131 -10.26130 -10.18933 -10.05565 -9.78669 -9.65700 -9.51978 -8.63503 -8.15121 -7.76998 -7.48246 -6.24657 -4.29967 1.15996 2.25584 2.28668 2.79344 2.91579 3.25160 3.28486 3.30684 3.32839 3.69123 3.83849 4.15366 4.31344 4.33420 4.35950 4.50993 4.56997 4.64159 4.69980 4.74349 4.89311 4.93730 4.98899 5.10432 5.14137 5.20047 5.29392 5.38229 5.43688 5.53270 5.54310 5.61418 5.78998 5.79011 6.23265 6.48470 6.57891 6.83287 6.85532 7.04695 7.36507 7.53834 7.69990 7.87844 8.03665 8.17344 8.61567 8.79052 9.35644 10.84034 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035510 B = 0.001615 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.326963 B =17329.746025 C =17876.376998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.258 3.742 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.287 4.287 13 C 0.257 3.743 14 N -0.627 5.627 15 C 0.536 3.464 16 O -0.495 6.495 17 C -0.131 4.131 18 S -0.153 6.153 19 C -0.106 4.106 20 C 0.109 3.891 21 H 0.068 0.932 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.158 4.158 25 C 0.060 3.940 26 O -0.367 6.367 27 N -0.304 5.304 28 H 0.268 0.732 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.411 0.589 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.256 -23.785 -4.514 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.100 5.100 11 C -0.098 4.098 12 C -0.318 4.318 13 C 0.004 3.996 14 N -0.275 5.275 15 C 0.319 3.681 16 O -0.368 6.368 17 C -0.282 4.282 18 S 0.074 5.926 19 C -0.255 4.255 20 C 0.050 3.950 21 H 0.086 0.914 22 C -0.185 4.185 23 C -0.160 4.160 24 C -0.196 4.196 25 C -0.017 4.017 26 O -0.286 6.286 27 N -0.135 5.135 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.186 0.814 32 H 0.178 0.822 33 H 0.247 0.753 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.984 -23.419 -3.802 31.020 hybrid contribution 1.409 1.164 -0.975 2.071 sum 21.393 -22.255 -4.777 31.238 Atomic orbital electron populations 1.69906 1.06034 1.27749 1.49622 1.24938 0.94984 0.99527 0.94572 0.86381 0.79376 0.81790 0.78902 1.19969 1.21022 1.20041 1.21219 0.93960 0.89408 1.52260 0.91362 1.19753 0.85597 0.81253 0.99317 1.49089 1.23163 1.19726 1.18011 1.22570 1.00332 0.90107 0.96765 1.21530 1.02168 1.06261 1.01820 1.19059 0.91388 0.94385 0.94805 1.42290 1.30035 1.24724 1.30486 1.19545 0.83581 0.80091 0.84863 1.90701 1.61656 1.59523 1.24881 1.23460 1.00401 1.00543 1.03829 1.87768 1.39356 1.26444 1.39081 1.23570 1.00015 0.98869 1.03023 1.21673 0.88209 0.86163 0.98961 0.91371 1.22206 0.97269 0.98072 1.00973 1.21587 0.98134 0.94687 1.01587 1.22217 0.96337 0.98949 1.02074 1.22582 0.96946 0.85749 0.96392 1.88043 1.39725 1.18916 1.81944 1.77326 1.03630 1.16280 1.16241 0.92256 0.93692 0.92473 0.81407 0.82232 0.75337 0.86963 0.86855 0.88668 0.89180 0.90757 0.90598 0.91657 0.91262 0.90852 0.91003 0.88623 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.76 9.24 -34.44 -0.32 -15.08 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.26 6.58 6.26 -5.19 -0.03 6.55 16 10 N -0.32 -7.43 3.67 -62.56 -0.23 -7.65 16 11 C 0.05 1.06 11.44 -17.24 -0.20 0.86 16 12 C -0.29 -5.76 9.61 -39.83 -0.38 -6.14 16 13 C 0.26 5.16 8.11 -154.39 -1.25 3.90 16 14 N -0.63 -9.51 5.45 -11.13 -0.06 -9.57 16 15 C 0.54 7.67 7.82 -10.98 -0.09 7.58 16 16 O -0.50 -8.90 13.00 5.55 0.07 -8.83 16 17 C -0.13 -1.25 6.42 36.01 0.23 -1.02 16 18 S -0.15 -1.72 20.66 -107.50 -2.22 -3.94 16 19 C -0.11 -0.78 5.63 37.16 0.21 -0.57 16 20 C 0.11 0.81 2.64 -26.68 -0.07 0.74 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 C -0.15 -0.77 5.42 -26.59 -0.14 -0.92 16 23 C -0.12 -0.58 6.03 -26.55 -0.16 -0.74 16 24 C -0.16 -0.81 6.13 -26.59 -0.16 -0.97 16 25 C 0.06 0.41 6.84 37.21 0.25 0.66 16 26 O -0.37 -3.46 10.16 -35.23 -0.36 -3.81 16 27 N -0.30 -6.99 12.42 31.44 0.39 -6.60 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.16 3.14 5.92 -52.49 -0.31 2.83 16 33 H 0.41 4.88 8.82 -40.82 -0.36 4.52 16 34 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 387.52 15.07 5.84 5.84 Total: -1.00 -33.94 387.52 -10.03 -43.97 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.98 Total: 2.37 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.21 Total: -3.53 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.84 Total: -48.38 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.29 Total: -12.64 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.22 Total: -3.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.94 -10.03 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117714846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.949 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds