Wall clock time and date at job start Tue Mar 31 2020 22:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99696 * 2 1 4 4 H 1.48510 * 109.46807 * 240.00198 * 3 2 1 5 5 H 1.48502 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47377 * 120.00061 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00264 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97153 * 125.01495 * 10 9 7 12 12 C 1.35236 * 107.85765 * 179.69248 * 11 10 9 13 13 C 1.40412 * 107.86792 * 0.43350 * 12 11 10 14 14 N 1.40153 * 125.97146 * 179.83091 * 13 12 11 15 15 C 1.34774 * 120.00256 * 359.71116 * 14 13 12 16 16 O 1.21294 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.50705 * 120.00154 * 180.02562 * 15 14 13 18 18 S 1.81399 * 109.47188 * 179.97438 * 17 15 14 19 19 C 1.81400 * 102.99943 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47070 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.48673 * 304.97044 * 20 19 18 22 22 C 1.53097 * 109.47971 * 184.94472 * 20 19 18 23 23 C 1.53180 * 109.21119 * 182.44174 * 22 20 19 24 24 C 1.53177 * 109.03525 * 56.88485 * 23 22 20 25 25 C 1.53098 * 109.21356 * 303.11207 * 24 23 22 26 26 O 1.42898 * 109.48269 * 65.00251 * 20 19 18 27 27 N 1.31219 * 108.05272 * 359.56353 * 13 12 11 28 28 H 0.96999 * 120.00322 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46944 * 59.99942 * 9 7 2 30 30 H 1.09000 * 109.47130 * 299.99926 * 9 7 2 31 31 H 1.08000 * 126.07121 * 359.94536 * 11 10 9 32 32 H 1.08000 * 126.06551 * 180.25787 * 12 11 10 33 33 H 0.97002 * 120.00265 * 179.71433 * 14 13 12 34 34 H 1.09004 * 109.46976 * 59.99953 * 17 15 14 35 35 H 1.09002 * 109.47019 * 300.00131 * 17 15 14 36 36 H 1.09004 * 109.47140 * 60.00621 * 19 18 17 37 37 H 1.08998 * 109.47558 * 300.00020 * 19 18 17 38 38 H 1.09002 * 109.52138 * 302.31194 * 22 20 19 39 39 H 1.09003 * 109.52113 * 62.50105 * 22 20 19 40 40 H 1.09005 * 109.49724 * 297.04659 * 23 22 20 41 41 H 1.09005 * 109.59319 * 176.78366 * 23 22 20 42 42 H 1.09002 * 109.52487 * 183.17418 * 24 23 22 43 43 H 1.09004 * 109.52023 * 63.05037 * 24 23 22 44 44 H 1.08999 * 109.47354 * 177.55660 * 25 24 23 45 45 H 1.08998 * 109.47939 * 297.58076 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.2420 -4.6225 0.8951 12 6 3.2563 -5.4463 0.5468 13 6 3.8683 -4.9152 -0.5999 14 7 4.9638 -5.4663 -1.2785 15 6 5.5276 -6.6068 -0.8340 16 8 5.0874 -7.1561 0.1538 17 6 6.7059 -7.1991 -1.5635 18 16 7.2333 -8.7194 -0.7263 19 6 8.6355 -9.2749 -1.7343 20 6 9.2024 -10.5702 -1.1498 21 1 9.4560 -10.4155 -0.1011 22 6 10.4596 -10.9729 -1.9251 23 6 10.9871 -12.3016 -1.3749 24 6 9.8806 -13.3565 -1.4708 25 6 8.6458 -12.8618 -0.7130 26 8 8.2261 -11.6083 -1.2559 27 7 3.2318 -3.8157 -0.9283 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 1.5781 -4.7521 1.7370 32 1 3.5462 -6.3506 1.0612 33 1 5.3161 -5.0268 -2.0683 34 1 7.5278 -6.4832 -1.5677 35 1 6.4194 -7.4295 -2.5896 36 1 9.4092 -8.5071 -1.7350 37 1 8.3003 -9.4539 -2.7559 38 1 10.2150 -11.0884 -2.9810 39 1 11.2217 -10.2022 -1.8089 40 1 11.2794 -12.1735 -0.3326 41 1 11.8490 -12.6230 -1.9597 42 1 10.2286 -14.2906 -1.0297 43 1 9.6241 -13.5212 -2.5173 44 1 7.8410 -13.5898 -0.8148 45 1 8.8921 -12.7373 0.3415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117714846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:56 Heat of formation + Delta-G solvation = -27.041403 kcal Electronic energy + Delta-G solvation = -25419.408866 eV Core-core repulsion = 21564.079349 eV Total energy + Delta-G solvation = -3855.329518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22985 -40.55819 -40.29769 -36.26943 -35.29322 -34.53754 -33.78043 -33.02612 -31.18937 -30.84045 -28.84112 -28.40479 -25.20536 -25.03682 -23.53363 -22.99673 -21.90187 -21.17700 -20.98503 -18.70243 -18.45385 -17.98375 -17.49129 -17.39304 -16.91821 -16.88229 -16.79725 -16.14666 -15.71591 -15.55237 -15.49719 -15.14747 -14.71805 -14.50050 -14.40411 -14.16109 -14.08011 -13.84172 -13.71571 -13.52511 -13.41250 -12.94754 -12.84781 -12.72189 -12.28763 -12.20439 -12.08926 -11.97940 -11.65635 -11.64232 -11.41668 -11.23566 -11.00555 -10.88956 -10.72161 -10.32896 -9.78387 -9.15434 -8.59472 -8.33101 -6.47550 0.37827 0.90278 1.36663 1.40123 1.41393 1.44791 1.50461 1.59676 2.19042 2.29165 2.41471 2.79890 2.98766 3.49445 3.68731 3.93608 3.94478 3.98631 4.05853 4.07588 4.13603 4.25352 4.26414 4.27048 4.42649 4.51321 4.70275 4.74415 4.75257 4.88146 4.88227 4.91453 4.95010 5.01633 5.07844 5.13413 5.14659 5.19916 5.39803 5.56019 5.79099 5.89725 6.19650 6.27439 6.30506 6.63653 6.94112 7.08590 7.22461 8.74412 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035510 B = 0.001615 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.326963 B =17329.746025 C =17876.376998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.343 5.343 11 C 0.057 3.943 12 C -0.295 4.295 13 C 0.266 3.734 14 N -0.619 5.619 15 C 0.534 3.466 16 O -0.533 6.533 17 C -0.109 4.109 18 S -0.231 6.231 19 C -0.086 4.086 20 C 0.104 3.896 21 H 0.060 0.940 22 C -0.140 4.140 23 C -0.123 4.123 24 C -0.154 4.154 25 C 0.053 3.947 26 O -0.395 6.395 27 N -0.343 5.343 28 H 0.273 0.727 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.165 0.835 33 H 0.428 0.572 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.688 -23.943 -5.365 34.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.125 5.125 11 C -0.092 4.092 12 C -0.326 4.326 13 C 0.011 3.989 14 N -0.270 5.270 15 C 0.320 3.680 16 O -0.408 6.408 17 C -0.260 4.260 18 S -0.005 6.005 19 C -0.234 4.234 20 C 0.045 3.955 21 H 0.077 0.923 22 C -0.179 4.179 23 C -0.161 4.161 24 C -0.191 4.191 25 C -0.023 4.023 26 O -0.314 6.314 27 N -0.174 5.174 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.182 0.818 33 H 0.266 0.734 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.441 -23.598 -4.672 32.898 hybrid contribution 0.706 1.049 -0.697 1.444 sum 23.147 -22.549 -5.369 32.758 Atomic orbital electron populations 1.69988 1.07235 1.28858 1.49789 1.25742 0.95845 1.02735 0.93821 0.85392 0.78276 0.77795 0.78913 1.19776 1.19792 1.19507 1.21379 0.93421 0.90960 1.53059 0.92865 1.19350 0.85671 0.81494 0.98135 1.48848 1.23860 1.20296 1.19482 1.23155 1.00489 0.88814 0.96733 1.21704 1.02347 1.06423 1.02128 1.19412 0.91681 0.93232 0.94551 1.42425 1.28737 1.25037 1.30764 1.20426 0.84057 0.79082 0.84417 1.90683 1.62947 1.60380 1.26757 1.23386 0.99002 0.99771 1.03810 1.88091 1.42360 1.28248 1.41767 1.23624 0.98417 0.99258 1.02074 1.21810 0.88818 0.85907 0.98979 0.92255 1.22175 0.96435 0.98797 1.00519 1.21622 0.98284 0.94307 1.01900 1.22180 0.95693 0.99645 1.01617 1.22714 0.97903 0.85139 0.96564 1.88001 1.41166 1.20013 1.82260 1.77246 1.04688 1.18100 1.17369 0.91820 0.96009 0.92380 0.78260 0.81780 0.73412 0.83535 0.83869 0.86048 0.88411 0.90679 0.88984 0.91565 0.90008 0.89596 0.91340 0.88506 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 13.29 21.44 0.28 -51.94 16 2 C 0.02 1.05 5.46 84.65 0.46 1.52 16 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.13 9.24 25.60 0.24 -30.90 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.27 14.23 6.26 85.63 0.54 14.77 16 10 N -0.34 -16.28 3.67 -351.84 -1.29 -17.57 16 11 C 0.06 2.28 11.44 83.52 0.96 3.24 16 12 C -0.29 -11.81 9.61 22.11 0.21 -11.60 16 13 C 0.27 10.62 8.11 133.33 1.08 11.70 16 14 N -0.62 -17.97 5.45 -307.51 -1.68 -19.65 16 15 C 0.53 14.53 7.82 87.66 0.69 15.22 16 16 O -0.53 -18.99 13.00 -3.07 -0.04 -19.03 16 17 C -0.11 -1.79 6.42 71.24 0.46 -1.33 16 18 S -0.23 -4.93 20.66 -56.49 -1.17 -6.10 16 19 C -0.09 -1.06 5.63 71.98 0.41 -0.66 16 20 C 0.10 1.40 2.64 30.63 0.08 1.48 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 C -0.14 -1.16 5.42 30.69 0.17 -0.99 16 23 C -0.12 -0.93 6.03 30.71 0.19 -0.75 16 24 C -0.15 -1.37 6.13 30.69 0.19 -1.18 16 25 C 0.05 0.70 6.84 72.01 0.49 1.19 16 26 O -0.39 -7.24 10.16 -148.98 -1.51 -8.75 16 27 N -0.34 -15.97 12.42 -54.45 -0.68 -16.64 16 28 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 31 H 0.20 6.41 8.06 -2.91 -0.02 6.39 16 32 H 0.16 6.46 5.92 -2.91 -0.02 6.45 16 33 H 0.43 9.35 8.82 -92.71 -0.82 8.54 16 34 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 45 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -75.09 387.52 2.27 -72.82 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.18 Total: 19.64 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 6.14 Total: 1.70 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.36 Total: -105.80 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.55 Total: -27.78 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.17 Total: -6.10 kcal Total: -75.09 2.27 -72.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117714846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.781 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds