Wall clock time and date at job start Tue Mar 31 2020 22:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53660 * 112.54096 * 2 1 4 4 C 1.54896 * 100.63514 * 90.53324 * 3 2 1 5 5 C 1.51132 * 104.27139 * 26.41311 * 4 3 2 6 6 O 1.21281 * 124.72915 * 168.68757 * 5 4 3 7 7 N 1.35818 * 110.53932 * 348.72220 * 5 4 3 8 8 C 1.46850 * 138.48675 * 165.20751 * 7 5 4 9 9 H 1.08994 * 108.68031 * 316.73354 * 8 7 5 10 10 C 1.50699 * 108.67701 * 74.59254 * 8 7 5 11 11 O 1.21290 * 119.99815 * 19.93167 * 10 8 7 12 12 N 1.34771 * 120.00177 * 199.93335 * 10 8 7 13 13 C 1.46957 * 120.59533 * 4.49625 * 12 10 8 14 14 C 1.53811 * 108.40483 * 124.75373 * 13 12 10 15 15 N 1.46967 * 108.57670 * 49.63559 * 14 13 12 16 16 C 1.36936 * 120.59417 * 124.66998 * 15 14 13 17 17 H 1.07993 * 120.00235 * 214.07295 * 16 15 14 18 18 C 1.38814 * 119.99807 * 34.07604 * 16 15 14 19 19 N 1.31621 * 120.00185 * 15.97760 * 18 16 15 20 20 Si 1.86799 * 119.99860 * 195.98487 * 18 16 15 21 21 H 1.48497 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47597 * 119.99433 * 20 18 16 23 23 H 1.48501 * 109.46739 * 239.99573 * 20 18 16 24 24 C 1.46959 * 118.81390 * 304.64947 * 15 14 13 25 25 C 1.46967 * 120.59334 * 184.76975 * 12 10 8 26 26 C 1.54436 * 113.55599 * 195.66207 * 8 7 5 27 27 S 1.83550 * 113.12204 * 233.97585 * 2 1 3 28 28 H 1.09004 * 109.47165 * 301.31385 * 1 2 3 29 29 H 1.09000 * 109.46894 * 61.31304 * 1 2 3 30 30 H 1.08995 * 109.47283 * 181.31348 * 1 2 3 31 31 H 1.08998 * 111.18336 * 208.38043 * 3 2 1 32 32 H 1.09002 * 111.18453 * 332.68930 * 3 2 1 33 33 H 1.08997 * 110.47156 * 267.71120 * 4 3 2 34 34 H 1.08999 * 110.57879 * 145.16530 * 4 3 2 35 35 H 1.09005 * 109.61110 * 244.53868 * 13 12 10 36 36 H 1.09002 * 109.60975 * 5.04186 * 13 12 10 37 37 H 1.08998 * 109.74277 * 289.85270 * 14 13 12 38 38 H 1.08997 * 109.53702 * 169.29971 * 14 13 12 39 39 H 0.96997 * 119.99794 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.61329 * 295.48277 * 24 15 14 41 41 H 1.08997 * 109.75694 * 175.05413 * 24 15 14 42 42 H 1.08997 * 109.60797 * 354.94988 * 25 12 10 43 43 H 1.08994 * 109.60763 * 115.29055 * 25 12 10 44 44 H 1.09000 * 110.98538 * 135.58562 * 26 8 7 45 45 H 1.08996 * 110.98258 * 259.38759 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1191 1.4192 0.0000 4 6 2.2418 1.6778 1.5223 5 6 2.3809 0.2986 2.1245 6 8 2.6958 0.0752 3.2742 7 7 2.1048 -0.6557 1.1984 8 6 2.2848 -2.1026 1.0230 9 1 3.2901 -2.3711 1.3475 10 6 1.2921 -2.8221 1.8993 11 8 0.3068 -2.2412 2.3030 12 7 1.4991 -4.1110 2.2343 13 6 2.7351 -4.7984 1.8351 14 6 3.4021 -5.3703 3.0976 15 7 2.3931 -6.1154 3.8636 16 6 2.6034 -7.4249 4.2041 17 1 1.7714 -8.1122 4.2464 18 6 3.8860 -7.8691 4.4948 19 7 4.8406 -7.0005 4.7528 20 14 4.2572 -9.6997 4.5195 21 1 3.0224 -10.4596 4.1988 22 1 5.3034 -10.0064 3.5113 23 1 4.7409 -10.0884 5.8687 24 6 1.1546 -5.4296 4.2580 25 6 0.4901 -4.8560 3.0003 26 6 2.0926 -2.5763 -0.4343 27 16 2.2508 -0.9928 -1.3652 28 1 -0.3634 0.5341 0.8780 29 1 -0.3633 0.4933 -0.9015 30 1 -0.3633 -1.0273 0.0236 31 1 3.0959 1.4402 -0.4831 32 1 1.4360 2.1292 -0.4663 33 1 1.3449 2.1696 1.8989 34 1 3.1247 2.2792 1.7388 35 1 2.4970 -5.6080 1.1452 36 1 3.4084 -4.0897 1.3529 37 1 3.7964 -4.5568 3.7065 38 1 4.2118 -6.0410 2.8100 39 1 5.7369 -7.3109 4.9556 40 1 1.3888 -4.6203 4.9495 41 1 0.4788 -6.1370 4.7385 42 1 -0.3196 -4.1853 3.2879 43 1 0.0936 -5.6677 2.3904 44 1 2.8745 -3.2787 -0.7228 45 1 1.1047 -3.0149 -0.5750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152693702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:33 Heat of formation + Delta-G solvation = -10.229571 kcal Electronic energy + Delta-G solvation = -28936.661064 eV Core-core repulsion = 25082.060562 eV Total energy + Delta-G solvation = -3854.600502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.00191 -39.50768 -37.18529 -36.72790 -34.47124 -33.80285 -31.42818 -30.55887 -30.34851 -29.77095 -27.10017 -25.73332 -25.02183 -23.53701 -22.87881 -21.68632 -20.97194 -19.55900 -18.70741 -17.67212 -17.55161 -16.37233 -16.22382 -15.88395 -15.63588 -15.02877 -14.85559 -14.76835 -14.27520 -14.10570 -13.84374 -13.73046 -13.61925 -13.35965 -13.32412 -13.29090 -12.88470 -12.86104 -12.52951 -12.35263 -11.99120 -11.61027 -11.45160 -11.40239 -11.32098 -10.89420 -10.83144 -10.79275 -10.52187 -10.31382 -10.13776 -10.03795 -9.87356 -9.65152 -8.84259 -8.63298 -8.34582 -8.18415 -6.69083 -5.90332 -3.40725 1.28047 1.62750 2.33145 2.39105 2.73860 3.29860 3.34294 3.38920 3.40979 3.80865 3.98968 4.25590 4.36787 4.41470 4.47538 4.58643 4.68620 4.97220 5.04911 5.14418 5.17892 5.28473 5.28985 5.32192 5.41909 5.49381 5.54931 5.67012 5.76473 5.85959 5.92055 5.93971 6.00526 6.10633 6.26319 6.35474 6.74786 6.85607 6.90625 7.10647 7.32429 7.69633 7.75233 7.94865 8.34913 8.37521 9.07587 9.68589 10.29688 11.17300 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.003198 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.348732 B = 8754.013688 C = 8906.703410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.177 3.823 3 C -0.109 4.109 4 C -0.139 4.139 5 C 0.544 3.456 6 O -0.506 6.506 7 N -0.602 5.602 8 C 0.135 3.865 9 H 0.114 0.886 10 C 0.501 3.499 11 O -0.537 6.537 12 N -0.591 5.591 13 C 0.076 3.924 14 C 0.162 3.838 15 N -0.588 5.588 16 C -0.263 4.263 17 H 0.066 0.934 18 C 0.010 3.990 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.131 3.869 25 C 0.098 3.902 26 C -0.061 4.061 27 S -0.257 6.257 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.091 0.909 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.130 0.870 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 15.336 -14.732 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 C -0.148 4.148 4 C -0.180 4.180 5 C 0.332 3.668 6 O -0.378 6.378 7 N -0.341 5.341 8 C 0.027 3.973 9 H 0.131 0.869 10 C 0.285 3.715 11 O -0.414 6.414 12 N -0.324 5.324 13 C -0.048 4.048 14 C 0.035 3.965 15 N -0.311 5.311 16 C -0.392 4.392 17 H 0.083 0.917 18 C -0.190 4.190 19 N -0.540 5.540 20 Si 0.732 3.268 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.216 1.216 24 C 0.004 3.996 25 C -0.026 4.026 26 C -0.210 4.210 27 S -0.027 6.027 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.149 0.851 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.354 15.626 -14.830 22.198 hybrid contribution 0.000 -1.495 1.140 1.880 sum -5.354 14.132 -13.689 20.390 Atomic orbital electron populations 1.22067 0.90283 1.04191 1.02891 1.24259 0.97034 0.95441 0.85183 1.22586 1.03100 0.92969 0.96181 1.22379 1.06050 0.94448 0.95102 1.21075 0.75318 0.86154 0.84265 1.90785 1.46415 1.84167 1.16477 1.49387 1.62726 1.04527 1.17418 1.21158 1.01273 0.79805 0.95028 0.86866 1.20594 0.87084 0.82128 0.81697 1.90649 1.30157 1.65702 1.54922 1.48043 1.20408 1.10335 1.53603 1.22880 0.85003 0.96140 1.00825 1.21149 0.91853 0.95305 0.88203 1.43896 1.16506 1.09707 1.60987 1.19172 0.93449 0.84438 1.42176 0.91659 1.25236 0.97583 0.97800 0.98343 1.70037 1.02209 1.32742 1.49002 0.86227 0.78089 0.85062 0.77386 1.20089 1.21409 1.21570 1.21303 0.89953 0.95657 0.92647 1.22231 0.90743 0.94953 0.94696 1.24503 1.07760 0.97625 0.91085 1.88224 1.82205 1.05554 1.26762 0.90821 0.90485 0.91079 0.88485 0.88220 0.87124 0.86955 0.91210 0.91435 0.95526 0.89063 0.93452 0.95824 0.91429 0.90070 0.91760 0.85138 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.31 37.16 0.35 -0.95 16 2 C 0.18 1.80 0.89 -66.65 -0.06 1.74 16 3 C -0.11 -0.78 6.34 -25.39 -0.16 -0.94 16 4 C -0.14 -1.19 6.81 -26.67 -0.18 -1.37 16 5 C 0.54 7.96 8.38 -10.30 -0.09 7.88 16 6 O -0.51 -9.98 18.03 5.56 0.10 -9.88 16 7 N -0.60 -8.20 2.39 -152.36 -0.36 -8.57 16 8 C 0.13 1.87 2.84 -68.14 -0.19 1.68 16 9 H 0.11 1.60 6.43 -51.93 -0.33 1.27 16 10 C 0.50 8.62 6.68 -10.99 -0.07 8.54 16 11 O -0.54 -10.65 15.70 5.55 0.09 -10.56 16 12 N -0.59 -10.40 2.94 -172.21 -0.51 -10.91 16 13 C 0.08 1.28 6.24 -3.37 -0.02 1.26 16 14 C 0.16 3.63 5.49 -3.37 -0.02 3.61 16 15 N -0.59 -14.30 2.93 -171.77 -0.50 -14.80 16 16 C -0.26 -6.95 9.52 -15.06 -0.14 -7.09 16 17 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 18 C 0.01 0.28 4.89 -17.43 -0.09 0.19 16 19 N -0.90 -25.36 11.56 55.49 0.64 -24.72 16 20 Si 0.90 20.90 29.58 -169.99 -5.03 15.87 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.13 2.81 6.67 -3.60 -0.02 2.78 16 25 C 0.10 1.78 6.60 -3.59 -0.02 1.75 16 26 C -0.06 -0.64 6.52 37.91 0.25 -0.39 16 27 S -0.26 -2.61 22.33 -107.50 -2.40 -5.01 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 31 H 0.10 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.10 0.47 8.00 -51.93 -0.42 0.05 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.94 5.08 -51.93 -0.26 0.68 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 2.22 6.41 -51.93 -0.33 1.89 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 42 H 0.08 1.47 6.99 -51.93 -0.36 1.11 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.13 1.12 7.89 -51.93 -0.41 0.71 16 45 H 0.11 1.12 7.78 -51.93 -0.40 0.71 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -34.36 367.59 -9.60 -43.96 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.69 Total: 0.40 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -0.48 Total: 18.68 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.73 Total: -59.00 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.19 Total: -20.44 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.40 Total: -5.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.36 -9.60 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152693702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.731 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds