Wall clock time and date at job start Tue Mar 31 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53660 * 112.54096 * 2 1 4 4 C 1.54896 * 100.63514 * 90.53324 * 3 2 1 5 5 C 1.51132 * 104.27139 * 26.41311 * 4 3 2 6 6 O 1.21281 * 124.72915 * 168.68757 * 5 4 3 7 7 N 1.35818 * 110.53932 * 348.72220 * 5 4 3 8 8 C 1.46850 * 138.48675 * 165.20751 * 7 5 4 9 9 H 1.08994 * 108.68031 * 316.73354 * 8 7 5 10 10 C 1.50699 * 108.67701 * 74.59254 * 8 7 5 11 11 O 1.21290 * 119.99815 * 19.93167 * 10 8 7 12 12 N 1.34771 * 120.00177 * 199.93335 * 10 8 7 13 13 C 1.46957 * 120.59533 * 4.49625 * 12 10 8 14 14 C 1.53811 * 108.40483 * 124.75373 * 13 12 10 15 15 N 1.46967 * 108.57670 * 49.63559 * 14 13 12 16 16 C 1.36936 * 120.59417 * 124.66998 * 15 14 13 17 17 H 1.07993 * 120.00235 * 214.07295 * 16 15 14 18 18 C 1.38814 * 119.99807 * 34.07604 * 16 15 14 19 19 N 1.31621 * 120.00185 * 15.97760 * 18 16 15 20 20 Si 1.86799 * 119.99860 * 195.98487 * 18 16 15 21 21 H 1.48497 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47597 * 119.99433 * 20 18 16 23 23 H 1.48501 * 109.46739 * 239.99573 * 20 18 16 24 24 C 1.46959 * 118.81390 * 304.64947 * 15 14 13 25 25 C 1.46967 * 120.59334 * 184.76975 * 12 10 8 26 26 C 1.54436 * 113.55599 * 195.66207 * 8 7 5 27 27 S 1.83550 * 113.12204 * 233.97585 * 2 1 3 28 28 H 1.09004 * 109.47165 * 301.31385 * 1 2 3 29 29 H 1.09000 * 109.46894 * 61.31304 * 1 2 3 30 30 H 1.08995 * 109.47283 * 181.31348 * 1 2 3 31 31 H 1.08998 * 111.18336 * 208.38043 * 3 2 1 32 32 H 1.09002 * 111.18453 * 332.68930 * 3 2 1 33 33 H 1.08997 * 110.47156 * 267.71120 * 4 3 2 34 34 H 1.08999 * 110.57879 * 145.16530 * 4 3 2 35 35 H 1.09005 * 109.61110 * 244.53868 * 13 12 10 36 36 H 1.09002 * 109.60975 * 5.04186 * 13 12 10 37 37 H 1.08998 * 109.74277 * 289.85270 * 14 13 12 38 38 H 1.08997 * 109.53702 * 169.29971 * 14 13 12 39 39 H 0.96997 * 119.99794 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.61329 * 295.48277 * 24 15 14 41 41 H 1.08997 * 109.75694 * 175.05413 * 24 15 14 42 42 H 1.08997 * 109.60797 * 354.94988 * 25 12 10 43 43 H 1.08994 * 109.60763 * 115.29055 * 25 12 10 44 44 H 1.09000 * 110.98538 * 135.58562 * 26 8 7 45 45 H 1.08996 * 110.98258 * 259.38759 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1191 1.4192 0.0000 4 6 2.2418 1.6778 1.5223 5 6 2.3809 0.2986 2.1245 6 8 2.6958 0.0752 3.2742 7 7 2.1048 -0.6557 1.1984 8 6 2.2848 -2.1026 1.0230 9 1 3.2901 -2.3711 1.3475 10 6 1.2921 -2.8221 1.8993 11 8 0.3068 -2.2412 2.3030 12 7 1.4991 -4.1110 2.2343 13 6 2.7351 -4.7984 1.8351 14 6 3.4021 -5.3703 3.0976 15 7 2.3931 -6.1154 3.8636 16 6 2.6034 -7.4249 4.2041 17 1 1.7714 -8.1122 4.2464 18 6 3.8860 -7.8691 4.4948 19 7 4.8406 -7.0005 4.7528 20 14 4.2572 -9.6997 4.5195 21 1 3.0224 -10.4596 4.1988 22 1 5.3034 -10.0064 3.5113 23 1 4.7409 -10.0884 5.8687 24 6 1.1546 -5.4296 4.2580 25 6 0.4901 -4.8560 3.0003 26 6 2.0926 -2.5763 -0.4343 27 16 2.2508 -0.9928 -1.3652 28 1 -0.3634 0.5341 0.8780 29 1 -0.3633 0.4933 -0.9015 30 1 -0.3633 -1.0273 0.0236 31 1 3.0959 1.4402 -0.4831 32 1 1.4360 2.1292 -0.4663 33 1 1.3449 2.1696 1.8989 34 1 3.1247 2.2792 1.7388 35 1 2.4970 -5.6080 1.1452 36 1 3.4084 -4.0897 1.3529 37 1 3.7964 -4.5568 3.7065 38 1 4.2118 -6.0410 2.8100 39 1 5.7369 -7.3109 4.9556 40 1 1.3888 -4.6203 4.9495 41 1 0.4788 -6.1370 4.7385 42 1 -0.3196 -4.1853 3.2879 43 1 0.0936 -5.6677 2.3904 44 1 2.8745 -3.2787 -0.7228 45 1 1.1047 -3.0149 -0.5750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152693702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:31 Heat of formation + Delta-G solvation = -32.996453 kcal Electronic energy + Delta-G solvation = -28937.648310 eV Core-core repulsion = 25082.060562 eV Total energy + Delta-G solvation = -3855.587748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08565 -40.82486 -38.61408 -38.09406 -35.81569 -35.22009 -33.21752 -31.99552 -31.42765 -30.72604 -28.80524 -26.53939 -26.30857 -25.18251 -24.45884 -22.62982 -22.34746 -20.90164 -19.98826 -19.17197 -18.59417 -17.96718 -17.19370 -17.12641 -16.97457 -16.59539 -16.25198 -15.79941 -15.57334 -15.47545 -15.26001 -15.13033 -15.04138 -14.72473 -14.62534 -14.20227 -13.92833 -13.72260 -13.64074 -13.38697 -13.31057 -13.23144 -12.78819 -12.72484 -12.56139 -12.30299 -12.24199 -12.09929 -12.02003 -11.98065 -11.73530 -11.63376 -11.19152 -10.85670 -10.65439 -9.98770 -9.91164 -8.95215 -8.66236 -7.93464 -5.48895 0.48418 0.78761 1.21856 1.35650 1.45035 1.47050 1.48987 1.59464 2.02877 2.47907 2.93460 3.19897 3.20498 3.23899 3.42611 3.50540 3.68597 3.75946 3.90677 4.13986 4.15943 4.18983 4.27196 4.30641 4.35279 4.47645 4.53231 4.55692 4.65029 4.67111 4.72327 4.76492 4.93151 4.96835 4.98160 5.05937 5.12092 5.19620 5.41901 5.49337 5.61493 5.87464 6.31696 6.33646 6.85451 6.98265 7.06245 7.70881 8.29338 9.11921 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.003198 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.348732 B = 8754.013688 C = 8906.703410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.168 3.832 3 C -0.096 4.096 4 C -0.127 4.127 5 C 0.527 3.473 6 O -0.574 6.574 7 N -0.613 5.613 8 C 0.134 3.866 9 H 0.107 0.893 10 C 0.498 3.502 11 O -0.566 6.566 12 N -0.597 5.597 13 C 0.094 3.906 14 C 0.167 3.833 15 N -0.604 5.604 16 C -0.272 4.272 17 H 0.069 0.931 18 C -0.040 4.040 19 N -0.933 5.933 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.296 1.296 24 C 0.131 3.869 25 C 0.110 3.890 26 C -0.059 4.059 27 S -0.238 6.238 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.100 0.900 37 H -0.013 1.013 38 H 0.070 0.930 39 H 0.253 0.747 40 H -0.007 1.007 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.154 0.846 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 16.166 -17.937 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 C -0.135 4.135 4 C -0.168 4.168 5 C 0.318 3.682 6 O -0.452 6.452 7 N -0.350 5.350 8 C 0.026 3.974 9 H 0.125 0.875 10 C 0.284 3.716 11 O -0.445 6.445 12 N -0.329 5.329 13 C -0.030 4.030 14 C 0.040 3.960 15 N -0.328 5.328 16 C -0.402 4.402 17 H 0.087 0.913 18 C -0.236 4.236 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.223 1.223 24 C 0.005 3.995 25 C -0.014 4.014 26 C -0.208 4.208 27 S -0.008 6.008 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.005 0.995 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.011 0.989 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.172 0.828 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.048 16.470 -18.105 25.212 hybrid contribution 0.156 -1.717 2.204 2.798 sum -5.892 14.753 -15.901 22.477 Atomic orbital electron populations 1.22056 0.89930 1.02886 1.04133 1.24592 0.97363 0.97005 0.83730 1.22697 1.04251 0.91474 0.95095 1.22476 1.07839 0.90735 0.95716 1.22345 0.73739 0.88507 0.83606 1.90740 1.49573 1.85510 1.19399 1.49632 1.62189 1.04482 1.18666 1.21241 0.99417 0.80292 0.96455 0.87535 1.21245 0.87265 0.81627 0.81429 1.90627 1.31694 1.66141 1.56085 1.48117 1.20365 1.10780 1.53664 1.22678 0.84877 0.97370 0.98073 1.20981 0.91641 0.93528 0.89812 1.44172 1.17380 1.09573 1.61668 1.19509 0.93686 0.85449 1.41519 0.91304 1.26005 0.97420 1.01864 0.98350 1.70195 1.02401 1.34674 1.50509 0.85165 0.78115 0.80081 0.76754 1.18780 1.21056 1.22321 1.21349 0.89419 0.94803 0.93941 1.22010 0.90514 0.95416 0.93501 1.24546 1.08876 0.98598 0.88735 1.88168 1.82115 1.04631 1.25911 0.91440 0.87404 0.93581 0.87692 0.84585 0.85248 0.84977 0.89083 0.88239 0.99452 0.91137 0.93838 0.98859 0.90698 0.90111 0.89799 0.82787 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.31 71.98 0.67 -1.54 16 2 C 0.17 2.98 0.89 44.89 0.04 3.02 16 3 C -0.10 -1.01 6.34 31.46 0.20 -0.81 16 4 C -0.13 -1.87 6.81 30.63 0.21 -1.67 16 5 C 0.53 15.39 8.38 87.63 0.73 16.13 16 6 O -0.57 -23.74 18.03 -3.03 -0.05 -23.80 16 7 N -0.61 -16.19 2.39 -753.73 -1.80 -18.00 16 8 C 0.13 3.61 2.84 44.67 0.13 3.74 16 9 H 0.11 2.99 6.43 -2.39 -0.02 2.97 16 10 C 0.50 17.17 6.68 87.66 0.59 17.75 16 11 O -0.57 -22.81 15.70 -3.06 -0.05 -22.86 16 12 N -0.60 -20.91 2.94 -817.15 -2.40 -23.31 16 13 C 0.09 3.10 6.24 86.57 0.54 3.64 16 14 C 0.17 7.73 5.49 86.56 0.48 8.21 16 15 N -0.60 -30.11 2.93 -697.36 -2.04 -32.16 16 16 C -0.27 -14.53 9.52 84.03 0.80 -13.73 16 17 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 18 C -0.04 -2.16 4.89 84.86 0.42 -1.74 16 19 N -0.93 -54.41 11.56 21.65 0.25 -54.16 16 20 Si 0.97 43.31 29.58 68.60 2.03 45.34 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 24 C 0.13 5.78 6.67 86.42 0.58 6.36 16 25 C 0.11 3.99 6.60 86.42 0.57 4.56 16 26 C -0.06 -1.10 6.52 72.47 0.47 -0.63 16 27 S -0.24 -4.10 22.33 -56.49 -1.26 -5.36 16 28 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.02 7.92 -2.39 -0.02 1.00 16 31 H 0.10 1.00 7.87 -2.39 -0.02 0.98 16 32 H 0.14 0.52 8.00 -2.39 -0.02 0.50 16 33 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.10 2.65 5.08 -2.39 -0.01 2.64 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.07 3.55 6.41 -2.39 -0.02 3.53 16 39 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.07 3.11 7.94 -2.39 -0.02 3.09 16 42 H 0.08 2.96 6.99 -2.39 -0.02 2.94 16 43 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.15 2.13 7.89 -2.39 -0.02 2.11 16 45 H 0.11 2.03 7.78 -2.39 -0.02 2.01 16 Total: -1.00 -79.60 367.59 2.08 -77.52 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 1.00 Total: 13.49 kcal Atomic # 6 Polarization: 36.87 SS G_CDS: 6.41 Total: 43.29 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -6.00 Total: -127.63 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.10 Total: -46.65 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -1.26 Total: -5.36 kcal Total: -79.60 2.08 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152693702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.526 kcal (2) G-P(sol) polarization free energy of solvation -79.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds