Wall clock time and date at job start Tue Mar 31 2020 22:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53877 * 112.89543 * 2 1 4 4 C 1.54835 * 101.03799 * 268.81866 * 3 2 1 5 5 C 1.51275 * 104.37134 * 334.63488 * 4 3 2 6 6 O 1.21275 * 124.79843 * 190.70323 * 5 4 3 7 7 N 1.34789 * 110.41097 * 10.70721 * 5 4 3 8 8 C 1.47834 * 141.53645 * 192.38739 * 7 5 4 9 9 H 1.09004 * 110.19879 * 242.86263 * 8 7 5 10 10 C 1.50704 * 110.14468 * 4.55446 * 8 7 5 11 11 O 1.21281 * 119.99667 * 23.11402 * 10 8 7 12 12 N 1.34771 * 120.00088 * 203.39402 * 10 8 7 13 13 C 1.46966 * 120.59421 * 4.38562 * 12 10 8 14 14 C 1.53812 * 108.39922 * 124.75930 * 13 12 10 15 15 N 1.46960 * 108.58128 * 49.63462 * 14 13 12 16 16 C 1.36942 * 120.59155 * 124.62428 * 15 14 13 17 17 H 1.08003 * 119.99767 * 209.02806 * 16 15 14 18 18 C 1.38808 * 120.00073 * 29.02881 * 16 15 14 19 19 N 1.31616 * 119.99976 * 16.18703 * 18 16 15 20 20 Si 1.86801 * 119.99986 * 196.18071 * 18 16 15 21 21 H 1.48493 * 109.47160 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46904 * 120.00327 * 20 18 16 23 23 H 1.48495 * 109.47415 * 240.00072 * 20 18 16 24 24 C 1.46962 * 118.81200 * 304.65181 * 15 14 13 25 25 C 1.46966 * 120.59588 * 184.66349 * 12 10 8 26 26 C 1.55817 * 106.01858 * 123.69622 * 8 7 5 27 27 S 1.82958 * 112.06870 * 125.30676 * 2 1 3 28 28 H 1.09001 * 109.47041 * 295.71407 * 1 2 3 29 29 H 1.09004 * 109.46848 * 55.70542 * 1 2 3 30 30 H 1.08993 * 109.47402 * 175.70943 * 1 2 3 31 31 H 1.08998 * 111.10502 * 26.76033 * 3 2 1 32 32 H 1.08998 * 111.10636 * 150.87173 * 3 2 1 33 33 H 1.08995 * 110.45536 * 215.91220 * 4 3 2 34 34 H 1.09000 * 110.56119 * 93.40929 * 4 3 2 35 35 H 1.08998 * 109.61413 * 244.53939 * 13 12 10 36 36 H 1.09002 * 109.61059 * 5.05310 * 13 12 10 37 37 H 1.09002 * 109.74016 * 289.84679 * 14 13 12 38 38 H 1.08999 * 109.53387 * 169.30622 * 14 13 12 39 39 H 0.97005 * 120.00026 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.61034 * 295.47466 * 24 15 14 41 41 H 1.09008 * 109.60849 * 174.96841 * 24 15 14 42 42 H 1.08996 * 109.60335 * 354.95130 * 25 12 10 43 43 H 1.09004 * 109.60617 * 115.28512 * 25 12 10 44 44 H 1.09001 * 111.17483 * 161.03367 * 26 8 7 45 45 H 1.09002 * 111.16993 * 285.27239 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1287 1.4175 0.0000 4 6 2.2729 1.6784 -1.5194 5 6 2.3852 0.2982 -2.1284 6 8 2.6959 0.0725 -3.2787 7 7 2.0910 -0.6453 -1.2118 8 6 2.1724 -2.1039 -0.9849 9 1 1.1725 -2.5246 -0.8788 10 6 2.8953 -2.7675 -2.1287 11 8 3.6580 -2.1247 -2.8185 12 7 2.6899 -4.0739 -2.3884 13 6 1.6935 -4.8403 -1.6269 14 6 0.7110 -5.4819 -2.6213 15 7 1.4836 -6.1671 -3.6669 16 6 1.2755 -7.4948 -3.9301 17 1 2.0829 -8.1028 -4.3109 18 6 0.0270 -8.0591 -3.7076 19 7 -1.0270 -7.2857 -3.5552 20 14 -0.1573 -9.9162 -3.6248 21 1 1.1683 -10.5546 -3.8255 22 1 -0.6956 -10.3013 -2.2953 23 1 -1.0911 -10.3689 -4.6869 24 6 2.4839 -5.4022 -4.4245 25 6 3.4625 -4.7592 -3.4340 26 6 2.9756 -2.2892 0.3373 27 16 2.2174 -0.9799 1.3837 28 1 -0.3633 0.4459 0.9259 29 1 -0.3633 0.5791 -0.8490 30 1 -0.3634 -1.0247 -0.0769 31 1 1.4449 2.1323 0.4579 32 1 3.0997 1.4335 0.4950 33 1 3.1728 2.2588 -1.7225 34 1 1.3932 2.1942 -1.9044 35 1 2.1933 -5.6178 -1.0492 36 1 1.1533 -4.1726 -0.9558 37 1 0.0880 -4.7101 -3.0733 38 1 0.0826 -6.2031 -2.0987 39 1 -1.8995 -7.6801 -3.3993 40 1 1.9872 -4.6247 -5.0049 41 1 3.0265 -6.0708 -5.0929 42 1 4.0908 -4.0379 -3.9565 43 1 4.0878 -5.5290 -2.9816 44 1 2.8099 -3.2787 0.7633 45 1 4.0384 -2.1033 0.1817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152693800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:37 Heat of formation + Delta-G solvation = -5.348980 kcal Electronic energy + Delta-G solvation = -28921.548523 eV Core-core repulsion = 25067.159659 eV Total energy + Delta-G solvation = -3854.388864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.97779 -39.44385 -37.04373 -36.82184 -34.29469 -33.83866 -31.44247 -30.54858 -30.27944 -29.71311 -27.14289 -25.61671 -25.07238 -23.56029 -22.84506 -21.89548 -20.85667 -19.57629 -18.41261 -17.66097 -17.39307 -16.34231 -16.23003 -15.97096 -15.46441 -14.99588 -14.80803 -14.73624 -14.53805 -13.93910 -13.75904 -13.74290 -13.57150 -13.37063 -13.33889 -13.19995 -12.89325 -12.75195 -12.50355 -12.26913 -12.21664 -11.66317 -11.51923 -11.38950 -11.30231 -10.90528 -10.80327 -10.61945 -10.52454 -10.29566 -10.08278 -9.90413 -9.82622 -9.45370 -9.02235 -8.65486 -8.32340 -8.09257 -6.76323 -5.90933 -3.36556 1.27014 1.76448 2.30624 2.53385 2.87818 3.28030 3.29933 3.38715 3.40754 3.88550 4.04067 4.27260 4.37840 4.40141 4.54295 4.62180 4.66276 4.96643 4.98399 5.18005 5.19352 5.28352 5.31087 5.34634 5.36045 5.51722 5.58905 5.68474 5.75582 5.77954 5.82671 5.89260 6.01019 6.12962 6.26421 6.35976 6.74165 6.86390 7.04272 7.12040 7.37427 7.67240 7.76344 8.08006 8.30727 8.42164 9.06734 9.68707 10.26138 11.16972 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.003318 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.116011 B = 8438.001306 C = 8945.376096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 C -0.110 4.110 4 C -0.143 4.143 5 C 0.539 3.461 6 O -0.480 6.480 7 N -0.613 5.613 8 C 0.134 3.866 9 H 0.119 0.881 10 C 0.506 3.494 11 O -0.513 6.513 12 N -0.592 5.592 13 C 0.075 3.925 14 C 0.159 3.841 15 N -0.590 5.590 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.132 3.868 25 C 0.099 3.901 26 C -0.070 4.070 27 S -0.263 6.263 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.102 0.898 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 15.897 12.180 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.184 4.184 5 C 0.326 3.674 6 O -0.350 6.350 7 N -0.353 5.353 8 C 0.028 3.972 9 H 0.136 0.864 10 C 0.290 3.710 11 O -0.388 6.388 12 N -0.326 5.326 13 C -0.049 4.049 14 C 0.032 3.968 15 N -0.313 5.313 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C 0.005 3.995 25 C -0.025 4.025 26 C -0.220 4.220 27 S -0.034 6.034 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.142 0.858 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.428 16.092 12.198 20.672 hybrid contribution -0.321 -1.332 -0.976 1.683 sum 4.107 14.759 11.221 18.990 Atomic orbital electron populations 1.22084 0.90330 1.04105 1.03295 1.24198 0.97102 0.95606 0.85877 1.22761 1.03008 0.93228 0.95990 1.22434 1.05789 0.94812 0.95366 1.20795 0.75897 0.85864 0.84800 1.90822 1.44327 1.83530 1.16309 1.49575 1.64234 1.04624 1.16861 1.22211 1.01006 0.80118 0.93878 0.86404 1.19874 0.83586 0.82520 0.85060 1.90803 1.36952 1.62341 1.48739 1.48005 1.39221 1.08420 1.36943 1.22905 0.91323 0.95008 0.95675 1.21250 0.90990 0.95791 0.88788 1.43975 1.42751 1.07403 1.37187 1.19257 0.94232 0.84067 1.40945 0.91383 1.25096 0.95028 0.98130 1.01200 1.70009 0.98317 1.33714 1.52652 0.86189 0.77765 0.85214 0.77403 1.20174 1.21443 1.21634 1.21300 0.91080 0.94682 0.92474 1.22219 0.94542 0.95893 0.89838 1.24822 1.02817 1.00719 0.93632 1.87829 1.70209 1.30840 1.14491 0.90119 0.90921 0.90829 0.88485 0.88506 0.87279 0.87409 0.91268 0.91388 0.95850 0.88010 0.93493 0.95763 0.91404 0.89960 0.91746 0.85752 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 37.16 0.34 -0.77 16 2 C 0.17 1.63 0.91 -66.47 -0.06 1.57 16 3 C -0.11 -0.81 6.33 -25.31 -0.16 -0.97 16 4 C -0.14 -1.26 6.83 -26.63 -0.18 -1.44 16 5 C 0.54 8.01 7.82 -10.70 -0.08 7.93 16 6 O -0.48 -9.70 15.67 -17.15 -0.27 -9.97 16 7 N -0.61 -8.25 3.11 -151.10 -0.47 -8.71 16 8 C 0.13 1.85 2.53 -66.85 -0.17 1.68 16 9 H 0.12 1.52 5.70 -51.93 -0.30 1.23 16 10 C 0.51 9.00 6.94 -10.99 -0.08 8.92 16 11 O -0.51 -10.99 13.32 -17.15 -0.23 -11.22 16 12 N -0.59 -10.57 2.94 -172.22 -0.51 -11.08 16 13 C 0.07 1.27 6.51 -3.37 -0.02 1.25 16 14 C 0.16 3.51 5.52 -3.37 -0.02 3.49 16 15 N -0.59 -14.23 2.96 -171.77 -0.51 -14.74 16 16 C -0.26 -6.71 9.58 -15.06 -0.14 -6.85 16 17 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 18 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 19 N -0.90 -25.02 11.18 55.49 0.62 -24.40 16 20 Si 0.90 20.79 29.58 -169.99 -5.03 15.77 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 C 0.13 2.80 6.67 -3.60 -0.02 2.77 16 25 C 0.10 1.83 6.60 -3.60 -0.02 1.81 16 26 C -0.07 -0.78 6.98 38.66 0.27 -0.51 16 27 S -0.26 -2.68 22.20 -107.50 -2.39 -5.07 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.66 7.73 -51.93 -0.40 0.26 16 31 H 0.10 0.46 8.01 -51.93 -0.42 0.05 16 32 H 0.10 0.72 7.87 -51.93 -0.41 0.31 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 2.47 6.01 -51.93 -0.31 2.15 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.37 7.93 -51.92 -0.41 0.96 16 42 H 0.08 1.55 6.99 -51.93 -0.36 1.18 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.10 1.22 8.12 -51.93 -0.42 0.80 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -34.23 362.83 -10.41 -44.64 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.66 Total: 0.42 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: -0.44 Total: 18.89 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.86 Total: -58.93 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.50 Total: -21.19 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.77 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.39 Total: -5.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.23 -10.41 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152693800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.292 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds