Wall clock time and date at job start Tue Mar 31 2020 22:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99989 * 2 1 4 4 H 1.48499 * 109.47450 * 239.99654 * 3 2 1 5 5 H 1.48496 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00286 * 3 2 1 7 7 C 1.37876 * 119.99485 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99717 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00339 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47399 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00230 * 270.00165 * 10 9 7 12 12 C 1.52995 * 109.47453 * 269.99771 * 11 10 9 13 13 N 1.46891 * 109.47527 * 180.02562 * 12 11 10 14 14 C 1.47014 * 110.99979 * 293.63644 * 13 12 11 15 15 C 1.53099 * 109.25948 * 177.60698 * 14 13 12 16 16 O 1.43015 * 109.25930 * 56.84745 * 15 14 13 17 17 C 1.43016 * 113.73988 * 301.33183 * 16 15 14 18 18 C 1.47015 * 111.00203 * 170.00103 * 13 12 11 19 19 C 1.34774 * 119.99563 * 90.00054 * 10 9 7 20 20 O 1.21610 * 120.00049 * 180.02562 * 19 10 9 21 21 N 1.34778 * 120.00227 * 0.02562 * 19 10 9 22 22 C 1.40817 * 120.00033 * 184.29602 * 21 19 10 23 23 C 1.38790 * 122.61661 * 326.30168 * 22 21 19 24 24 C 1.33374 * 114.88824 * 179.97438 * 23 22 21 25 25 S 1.75860 * 109.70192 * 0.02562 * 24 23 22 26 26 C 1.33784 * 122.61760 * 146.00950 * 22 21 19 27 27 H 0.97004 * 119.99734 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47375 * 60.00201 * 9 7 2 29 29 H 1.09000 * 109.47548 * 300.00321 * 9 7 2 30 30 H 1.09003 * 109.46975 * 29.99578 * 11 10 9 31 31 H 1.08999 * 109.47063 * 149.99586 * 11 10 9 32 32 H 1.09002 * 109.46716 * 300.00394 * 12 11 10 33 33 H 1.09006 * 109.46825 * 59.99623 * 12 11 10 34 34 H 1.09006 * 109.50595 * 297.54060 * 14 13 12 35 35 H 1.08995 * 109.50723 * 57.66909 * 14 13 12 36 36 H 1.08994 * 109.51020 * 296.91209 * 15 14 13 37 37 H 1.08997 * 109.54039 * 176.79902 * 15 14 13 38 38 H 1.09003 * 109.50367 * 298.73821 * 17 16 15 39 39 H 1.08994 * 109.54633 * 178.62882 * 17 16 15 40 40 H 1.08998 * 109.50702 * 302.32297 * 18 13 12 41 41 H 1.09000 * 109.50665 * 62.41403 * 18 13 12 42 42 H 0.96999 * 120.00292 * 4.29669 * 21 19 10 43 43 H 1.08001 * 122.55365 * 0.02562 * 23 22 21 44 44 H 1.08003 * 125.15330 * 180.02562 * 24 23 22 45 45 H 1.07996 * 125.19869 * 359.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 2.6789 -4.1684 -1.2719 12 6 1.7482 -5.2992 -1.7146 13 7 2.2258 -5.8567 -2.9869 14 6 2.1082 -4.8711 -4.0713 15 6 2.6708 -5.4713 -5.3625 16 8 1.9781 -6.6870 -5.6584 17 6 2.0723 -7.6698 -4.6237 18 6 1.5037 -7.0918 -3.3250 19 6 2.6407 -4.1260 1.1641 20 8 3.4312 -5.0501 1.1633 21 7 2.2024 -3.6151 2.3317 22 6 2.7273 -4.0897 3.5491 23 6 3.1166 -5.4092 3.7322 24 6 3.5928 -5.6908 4.9457 25 16 3.5662 -4.2430 5.9437 26 6 2.8950 -3.3025 4.6178 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6239 -2.5575 0.8879 30 1 2.6867 -3.3861 -2.0308 31 1 3.6883 -4.5585 -1.1418 32 1 1.7404 -6.0814 -0.9556 33 1 0.7387 -4.9090 -1.8446 34 1 1.0591 -4.6133 -4.2166 35 1 2.6712 -3.9748 -3.8111 36 1 3.7330 -5.6795 -5.2346 37 1 2.5342 -4.7659 -6.1821 38 1 3.1172 -7.9419 -4.4742 39 1 1.5030 -8.5546 -4.9083 40 1 1.6255 -7.8167 -2.5201 41 1 0.4449 -6.8697 -3.4577 42 1 1.5253 -2.9205 2.3335 43 1 3.0405 -6.1513 2.9511 44 1 3.9420 -6.6610 5.2670 45 1 2.6536 -2.2508 4.6603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157658226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:03 Heat of formation + Delta-G solvation = -19.199031 kcal Electronic energy + Delta-G solvation = -27558.881980 eV Core-core repulsion = 23703.892533 eV Total energy + Delta-G solvation = -3854.989447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09448 -39.48707 -37.59483 -36.04468 -34.84477 -33.23623 -32.69305 -31.24144 -29.82048 -28.61303 -27.35234 -25.89251 -24.04323 -23.49623 -23.03360 -22.13575 -20.40484 -19.91140 -18.71462 -17.52422 -17.35026 -16.69402 -16.52287 -16.16367 -15.79481 -15.16195 -15.11562 -15.03621 -14.74487 -14.57033 -14.29633 -13.77713 -13.39995 -13.20780 -12.93808 -12.69061 -12.56518 -12.40473 -12.30190 -12.20674 -12.01197 -11.58421 -11.47345 -11.39365 -11.03849 -10.87935 -10.72978 -10.68584 -10.42984 -10.21643 -9.93387 -9.78710 -9.70404 -9.43688 -8.67641 -8.46382 -8.36664 -7.94175 -7.48646 -6.28882 -4.37549 1.24984 1.86800 2.15399 2.93472 3.18322 3.23733 3.25432 3.34856 3.74113 3.84462 4.02870 4.24277 4.64314 4.84632 4.98788 5.01584 5.04171 5.11135 5.19379 5.24474 5.42038 5.51590 5.54657 5.57959 5.62181 5.74833 5.81281 5.82418 5.93105 5.94148 6.11128 6.21515 6.37448 6.44147 6.50555 6.59050 6.95667 6.97565 7.03528 7.08932 7.15848 7.29413 7.66321 7.68853 7.92279 8.47120 8.74027 9.17420 9.32546 10.77213 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007668 B = 0.003845 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3650.631152 B = 7280.912429 C =10475.017714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.240 3.760 10 N -0.609 5.609 11 C 0.144 3.856 12 C 0.043 3.957 13 N -0.533 5.533 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.711 3.289 20 O -0.602 6.602 21 N -0.672 5.672 22 C 0.171 3.829 23 C -0.119 4.119 24 C -0.211 4.211 25 S 0.086 5.914 26 C -0.263 4.263 27 H 0.267 0.733 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.418 0.582 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -11.020 0.239 11.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.120 3.880 10 N -0.342 5.342 11 C 0.020 3.980 12 C -0.086 4.086 13 N -0.258 5.258 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.413 3.587 20 O -0.483 6.483 21 N -0.322 5.322 22 C 0.064 3.936 23 C -0.151 4.151 24 C -0.347 4.347 25 S 0.346 5.654 26 C -0.402 4.402 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.258 0.742 43 H 0.173 0.827 44 H 0.181 0.819 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.762 -11.332 1.489 12.032 hybrid contribution -1.177 1.500 -1.256 2.283 sum 2.585 -9.831 0.233 10.168 Atomic orbital electron populations 1.69910 1.06011 1.27609 1.49356 1.24947 0.94851 0.99366 0.94535 0.86545 0.79545 0.82410 0.78949 1.20055 1.21117 1.20057 1.21471 0.93705 0.90326 1.52490 0.91970 1.19350 0.87438 0.82948 0.98237 1.47325 1.47842 1.35992 1.03091 1.21053 0.97773 0.94483 0.84716 1.22544 0.97365 0.98304 0.90350 1.62135 1.56085 1.04909 1.02700 1.22886 1.00812 0.96200 0.91741 1.22681 0.96071 0.86106 0.96381 1.87956 1.75016 1.25540 1.42271 1.22642 1.01007 0.91026 0.86516 1.22760 0.96401 0.93266 0.98562 1.15782 0.80554 0.81794 0.80608 1.90823 1.39166 1.31779 1.86489 1.42755 1.44052 1.43240 1.02189 1.16625 0.98987 0.91901 0.86103 1.20289 1.01135 0.96297 0.97377 1.25402 1.09697 1.02070 0.97515 1.83923 1.64450 1.01557 1.15506 1.25111 1.13976 1.03580 0.97563 0.92345 0.94392 0.95266 0.90403 0.89949 0.90543 0.94457 0.93756 0.88854 0.92238 0.88506 0.92279 0.88720 0.89707 0.94075 0.74235 0.82698 0.81928 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.49 9.39 -34.44 -0.32 -13.81 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.24 5.40 4.96 -5.19 -0.03 5.37 16 10 N -0.61 -12.33 2.46 -180.80 -0.44 -12.77 16 11 C 0.14 2.59 5.34 -4.05 -0.02 2.57 16 12 C 0.04 0.68 5.28 -3.83 -0.02 0.66 16 13 N -0.53 -7.44 4.73 -234.31 -1.11 -8.55 16 14 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -4.94 10.83 -35.23 -0.38 -5.33 16 17 C 0.07 0.70 7.01 37.21 0.26 0.96 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.71 14.74 8.18 -86.92 -0.71 14.03 16 20 O -0.60 -13.27 13.59 5.27 0.07 -13.20 16 21 N -0.67 -12.83 5.30 -15.19 -0.08 -12.91 16 22 C 0.17 2.99 6.26 -85.08 -0.53 2.45 16 23 C -0.12 -1.95 8.86 -41.08 -0.36 -2.31 16 24 C -0.21 -2.84 11.22 29.03 0.33 -2.52 16 25 S 0.09 1.11 23.33 -107.50 -2.51 -1.40 16 26 C -0.26 -4.07 11.19 29.17 0.33 -3.74 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.03 0.67 6.30 -51.93 -0.33 0.35 16 30 H 0.08 1.39 6.45 -51.93 -0.33 1.05 16 31 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 32 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 33 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.42 7.98 6.52 -40.82 -0.27 7.72 16 43 H 0.16 2.71 6.55 -52.49 -0.34 2.36 16 44 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 45 H 0.17 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -28.37 378.66 -10.59 -38.96 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.59 Total: 10.67 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.96 Total: 6.60 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.90 Total: -57.06 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.31 Total: -18.53 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.37 -10.59 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157658226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.761 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds