Wall clock time and date at job start Tue Mar 31 2020 22:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 S 1.81408 * 109.46799 * 180.02562 * 11 10 9 13 13 O 1.42102 * 110.54035 * 291.62208 * 12 11 10 14 14 O 1.42098 * 110.54418 * 68.37375 * 12 11 10 15 15 N 1.65603 * 104.44779 * 180.02562 * 12 11 10 16 16 C 1.46493 * 120.00153 * 64.99496 * 15 12 11 17 17 H 1.08999 * 110.29155 * 25.67295 * 16 15 12 18 18 C 1.54261 * 110.32662 * 263.54561 * 16 15 12 19 19 C 1.54376 * 105.06205 * 241.10588 * 18 16 15 20 20 N 1.48557 * 104.59444 * 23.85157 * 19 18 16 21 21 C 1.39002 * 110.99697 * 200.96005 * 20 19 18 22 22 C 1.39140 * 119.70693 * 300.12440 * 21 20 19 23 23 C 1.38297 * 119.09492 * 180.02562 * 22 21 20 24 24 C 1.38877 * 118.50872 * 0.02562 * 23 22 21 25 25 C 1.38023 * 119.33233 * 359.97438 * 24 23 22 26 26 N 1.31972 * 120.85162 * 359.72587 * 25 24 23 27 27 C 1.48557 * 104.22325 * 320.51679 * 20 19 18 28 28 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 30 30 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 32 32 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 33 33 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 34 34 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 35 35 H 0.96997 * 119.99647 * 245.00334 * 15 12 11 36 36 H 1.09005 * 110.32244 * 0.02562 * 18 16 15 37 37 H 1.09006 * 110.32104 * 122.20751 * 18 16 15 38 38 H 1.08998 * 110.41217 * 142.63370 * 19 18 16 39 39 H 1.09002 * 110.41069 * 264.95407 * 19 18 16 40 40 H 1.07995 * 120.45228 * 359.97438 * 22 21 20 41 41 H 1.08004 * 120.74407 * 180.02562 * 23 22 21 42 42 H 1.08007 * 120.33888 * 180.02562 * 24 23 22 43 43 H 1.07994 * 119.57696 * 180.02562 * 25 24 23 44 44 H 1.08997 * 110.41136 * 280.70244 * 27 20 19 45 45 H 1.09003 * 110.41252 * 158.26448 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 16 2.6589 -6.3660 0.0007 13 8 3.3565 -6.4262 -1.2359 14 8 3.3547 -6.4264 1.2381 15 7 1.7084 -7.7221 -0.0008 16 6 0.8501 -8.0138 -1.1516 17 1 1.2565 -7.5540 -2.0524 18 6 -0.5840 -7.5081 -0.8923 19 6 -1.4708 -8.7706 -0.9481 20 7 -0.5475 -9.8908 -0.6324 21 6 -1.0569 -11.1002 -1.0905 22 6 -2.2840 -11.5550 -0.6177 23 6 -2.7786 -12.7603 -1.0816 24 6 -2.0266 -13.4737 -2.0059 25 6 -0.8172 -12.9630 -2.4320 26 7 -0.3725 -11.8070 -1.9765 27 6 0.7091 -9.5392 -1.3424 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6240 -2.5566 0.8902 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 0.8531 -5.0451 0.8897 34 1 0.8537 -5.0446 -0.8902 35 1 1.7200 -8.3232 0.7603 36 1 -0.6492 -7.0425 0.0912 37 1 -0.8821 -6.8014 -1.6668 38 1 -2.2646 -8.7108 -0.2036 39 1 -1.8941 -8.8939 -1.9450 40 1 -2.8421 -10.9750 0.1023 41 1 -3.7283 -13.1383 -0.7329 42 1 -2.3850 -14.4181 -2.3882 43 1 -0.2294 -13.5143 -3.1510 44 1 0.6286 -9.7841 -2.4015 45 1 1.5567 -10.0583 -0.8947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159324426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:26 Heat of formation + Delta-G solvation = -56.933722 kcal Electronic energy + Delta-G solvation = -26745.248012 eV Core-core repulsion = 22888.622266 eV Total energy + Delta-G solvation = -3856.625746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68035 -39.59128 -38.16089 -37.04617 -36.44580 -35.74932 -34.14909 -33.43108 -32.28607 -30.08373 -29.57646 -28.87476 -25.61560 -24.49299 -24.35326 -22.45332 -22.09829 -21.70586 -20.44470 -18.96368 -18.59131 -18.33186 -17.62074 -17.33573 -17.08810 -16.80405 -16.60499 -16.44930 -15.76305 -15.53277 -15.46238 -15.14485 -14.48040 -14.25231 -14.19571 -14.04378 -13.88849 -13.53426 -13.40246 -13.29388 -13.18488 -13.12258 -12.94814 -12.89464 -12.73120 -12.69725 -12.63289 -12.14435 -12.12567 -11.94251 -11.71518 -11.36293 -11.12718 -10.94431 -10.74492 -10.55378 -10.46882 -10.34884 -9.15937 -8.21387 -6.31763 -0.72383 0.19863 0.39190 1.40880 1.43046 1.50946 1.77756 2.40676 2.56793 2.77488 2.93108 3.12122 3.22234 3.37633 3.45449 3.76400 3.80807 3.95846 4.04303 4.12164 4.19264 4.22085 4.28820 4.31692 4.39007 4.42874 4.45150 4.68832 4.75016 4.81175 4.84768 4.91666 4.93391 4.98184 5.09208 5.14354 5.22491 5.33355 5.47581 5.58295 5.59308 5.66382 5.81548 6.09643 6.15810 6.21923 6.83670 7.05066 7.37158 8.89646 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.002162 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.307962 B =12948.661839 C =13806.130739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.107 4.107 11 C -0.605 4.605 12 S 2.628 3.372 13 O -0.991 6.991 14 O -0.994 6.994 15 N -1.098 6.098 16 C 0.136 3.864 17 H 0.108 0.892 18 C -0.154 4.154 19 C 0.047 3.953 20 N -0.463 5.463 21 C 0.278 3.722 22 C -0.189 4.189 23 C -0.058 4.058 24 C -0.197 4.197 25 C 0.106 3.894 26 N -0.547 5.547 27 C 0.051 3.949 28 H 0.265 0.735 29 H 0.005 0.995 30 H 0.004 0.996 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.425 0.575 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.147 0.853 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.173 0.827 44 H 0.076 0.924 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 -28.070 -3.834 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.736 4.736 12 S 2.723 3.277 13 O -0.981 6.981 14 O -0.984 6.984 15 N -0.858 5.858 16 C 0.027 3.973 17 H 0.126 0.874 18 C -0.194 4.194 19 C -0.079 4.079 20 N -0.181 5.181 21 C 0.047 3.953 22 C -0.211 4.211 23 C -0.084 4.084 24 C -0.217 4.217 25 C -0.051 4.051 26 N -0.261 5.261 27 C -0.078 4.078 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.262 0.738 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.165 0.835 41 H 0.181 0.819 42 H 0.178 0.822 43 H 0.190 0.810 44 H 0.095 0.905 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.037 -27.550 -3.696 28.673 hybrid contribution -1.095 0.649 -0.018 1.273 sum -8.132 -26.900 -3.714 28.347 Atomic orbital electron populations 1.70057 1.07510 1.27889 1.51344 1.25909 0.95832 1.03112 0.94674 0.85564 0.78385 0.78379 0.79134 1.19303 1.20634 1.19370 1.21724 0.93710 0.92633 1.51032 0.92307 1.18943 0.93967 0.91606 0.96036 1.21314 0.98700 0.92598 1.01977 1.30526 1.16471 1.13267 1.13380 1.04277 0.75217 0.75384 0.72788 1.93534 1.71327 1.86330 1.46872 1.93535 1.72013 1.86503 1.46386 1.55391 1.61275 1.41021 1.28121 1.21771 0.90783 0.96280 0.88428 0.87363 1.23158 0.93113 0.97746 1.05343 1.23233 0.95323 0.87783 1.01540 1.62591 1.05309 1.00520 1.49690 1.20270 0.91207 0.93242 0.90615 1.21809 0.96272 0.99294 1.03748 1.21873 1.00143 0.92593 0.93769 1.22365 0.96216 1.02928 1.00200 1.22990 0.94516 0.90580 0.97027 1.67584 1.36750 1.09819 1.11970 1.23144 0.92257 0.93440 0.98963 0.92661 0.97615 0.97797 0.91788 0.91590 0.83321 0.83344 0.73798 0.88525 0.88067 0.87560 0.92321 0.83530 0.81945 0.82152 0.81032 0.90541 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 2 C 0.00 0.17 5.46 84.65 0.46 0.64 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.11 -4.23 5.16 30.59 0.16 -4.08 16 11 C -0.61 -17.19 5.96 71.98 0.43 -16.76 16 12 S 2.63 73.80 5.45 -56.49 -0.31 73.49 16 13 O -0.99 -33.82 17.42 -127.65 -2.22 -36.04 16 14 O -0.99 -34.51 18.08 -127.65 -2.31 -36.82 16 15 N -1.10 -22.41 5.29 -165.67 -0.88 -23.29 16 16 C 0.14 2.46 3.62 45.89 0.17 2.62 16 17 H 0.11 1.97 7.54 -2.39 -0.02 1.95 16 18 C -0.15 -2.24 6.46 31.49 0.20 -2.04 16 19 C 0.05 0.65 5.89 86.45 0.51 1.16 16 20 N -0.46 -8.25 5.41 -687.92 -3.72 -11.97 16 21 C 0.28 5.15 6.23 133.06 0.83 5.98 16 22 C -0.19 -2.65 9.40 22.50 0.21 -2.44 16 23 C -0.06 -0.59 10.17 22.44 0.23 -0.36 16 24 C -0.20 -1.98 10.10 22.37 0.23 -1.76 16 25 C 0.11 1.49 11.17 84.62 0.95 2.44 16 26 N -0.55 -10.75 8.48 -193.26 -1.64 -12.39 16 27 C 0.05 0.97 5.51 86.45 0.48 1.44 16 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.15 3.54 7.93 -2.39 -0.02 3.53 16 35 H 0.43 7.74 8.80 -96.75 -0.85 6.89 16 36 H 0.10 1.35 7.95 -2.38 -0.02 1.33 16 37 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.11 1.18 8.00 -2.39 -0.02 1.16 16 39 H 0.06 0.80 7.98 -2.39 -0.02 0.78 16 40 H 0.15 1.61 7.87 -2.91 -0.02 1.59 16 41 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 42 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 43 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.08 1.53 7.24 -2.39 -0.02 1.51 16 45 H 0.09 1.79 8.05 -2.39 -0.02 1.77 16 Total: -1.00 -77.91 383.91 -3.40 -81.31 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.14 Total: 16.74 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 5.23 Total: -42.31 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -5.95 Total: -102.41 kcal Atomic # 8 Polarization: -68.33 SS G_CDS: -4.53 Total: -72.86 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 73.80 SS G_CDS: -0.31 Total: 73.49 kcal Total: -77.91 -3.40 -81.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159324426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.379 kcal (2) G-P(sol) polarization free energy of solvation -77.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds