Wall clock time and date at job start Tue Mar 31 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00298 * 2 1 4 4 H 1.48496 * 109.47104 * 270.00234 * 3 2 1 5 5 H 1.48502 * 109.46693 * 30.00520 * 3 2 1 6 6 H 1.48500 * 109.46834 * 150.00205 * 3 2 1 7 7 C 1.37876 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00321 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47297 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47202 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47188 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00205 * 180.02562 * 12 11 10 14 14 O 1.21586 * 119.99992 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00304 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00336 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47341 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47132 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.47226 * 179.97438 * 18 17 16 20 20 C 1.34774 * 119.99745 * 179.97438 * 19 18 17 21 21 O 1.21702 * 120.00519 * 359.97438 * 20 19 18 22 22 C 1.46584 * 119.99515 * 180.02562 * 20 19 18 23 23 C 1.36652 * 125.45799 * 180.02562 * 22 20 19 24 24 C 1.37475 * 113.29531 * 179.97438 * 23 22 20 25 25 C 1.33814 * 115.10326 * 0.02562 * 24 23 22 26 26 S 1.70613 * 110.95401 * 359.97438 * 25 24 23 27 27 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47213 * 59.99876 * 9 7 2 29 29 H 1.08996 * 109.47069 * 299.99914 * 9 7 2 30 30 H 1.09006 * 109.46882 * 60.00120 * 10 9 7 31 31 H 1.08996 * 109.47048 * 299.99996 * 10 9 7 32 32 H 1.09006 * 109.46857 * 60.00408 * 11 10 9 33 33 H 1.09001 * 109.47298 * 300.00590 * 11 10 9 34 34 H 0.97005 * 120.00346 * 0.02562 * 12 11 10 35 35 H 0.97003 * 119.99418 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.47262 * 59.99429 * 16 15 13 37 37 H 1.09008 * 109.46823 * 299.99633 * 16 15 13 38 38 H 1.08994 * 109.47094 * 59.99518 * 17 16 15 39 39 H 1.09000 * 109.46860 * 299.99789 * 17 16 15 40 40 H 1.09007 * 109.47095 * 59.99658 * 18 17 16 41 41 H 1.09000 * 109.47192 * 299.99728 * 18 17 16 42 42 H 0.97002 * 119.99564 * 0.02562 * 19 18 17 43 43 H 1.07998 * 123.35183 * 0.27017 * 23 22 20 44 44 H 1.07999 * 122.44590 * 180.02562 * 24 23 22 45 45 H 1.07999 * 124.52176 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3713 -0.0019 14 8 0.7874 -7.5935 -0.0010 15 7 2.8585 -8.3958 -0.0020 16 6 2.3702 -9.7770 -0.0026 17 6 3.5601 -10.7387 -0.0019 18 6 3.0501 -12.1812 -0.0020 19 7 4.1895 -13.1021 -0.0019 20 6 3.9798 -14.4334 -0.0014 21 8 2.8441 -14.8707 -0.0006 22 6 5.1199 -15.3548 -0.0007 23 6 5.0368 -16.7188 -0.0007 24 6 6.2641 -17.3382 -0.0006 25 6 7.3169 -16.5123 0.0000 26 16 6.8135 -14.8821 -0.0002 27 1 -0.4849 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8725 -3.6049 0.8878 31 1 2.8711 -3.6041 -0.8922 32 1 0.8525 -5.0447 -0.8906 33 1 0.8544 -5.0450 0.8894 34 1 3.3858 -5.9235 -0.0021 35 1 3.8122 -8.2185 -0.0023 36 1 1.7649 -9.9479 -0.8928 37 1 1.7643 -9.9486 0.8872 38 1 4.1650 -10.5676 0.8885 39 1 4.1663 -10.5673 -0.8914 40 1 2.4449 -12.3525 -0.8923 41 1 2.4441 -12.3523 0.8877 42 1 5.0947 -12.7535 -0.0014 43 1 4.1003 -17.2566 -0.0054 44 1 6.3707 -18.4129 -0.0010 45 1 8.3477 -16.8346 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170885076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:51 Heat of formation + Delta-G solvation = -82.596237 kcal Electronic energy + Delta-G solvation = -24362.871266 eV Core-core repulsion = 20505.132710 eV Total energy + Delta-G solvation = -3857.738556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.06281 -40.83372 -38.51783 -37.50406 -36.79179 -35.56200 -35.16472 -33.22988 -32.24990 -30.65224 -28.60982 -26.97792 -25.49463 -24.63282 -22.89466 -22.41684 -22.28169 -21.80306 -20.32894 -19.65398 -19.04181 -18.51039 -17.59630 -17.21055 -16.97871 -16.78783 -16.69501 -16.47696 -15.99125 -15.97093 -15.31334 -15.27524 -15.15890 -14.59098 -14.24815 -14.13284 -13.71862 -13.71659 -13.71013 -13.40933 -13.32299 -13.06076 -12.73672 -12.62728 -12.52392 -12.34740 -12.10865 -11.97430 -11.65015 -11.64451 -11.33865 -11.27769 -11.12655 -10.53647 -10.38868 -10.34836 -9.83984 -9.74526 -9.51592 -8.17777 -6.29350 -0.51461 0.48663 0.91168 1.39447 1.43111 1.44546 1.55332 1.63497 2.07961 2.12099 2.16010 2.43607 3.16272 3.33747 3.70478 3.95882 3.97176 4.00595 4.15107 4.20182 4.25896 4.35242 4.51475 4.53825 4.57089 4.58722 4.74899 4.98331 4.98537 5.02634 5.08511 5.09050 5.19640 5.22345 5.26370 5.34888 5.47511 5.50394 5.56837 5.73424 5.86354 6.04443 6.24448 6.34197 6.88310 7.02570 7.15168 7.40450 7.60542 8.94457 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032786 B = 0.001190 C = 0.001150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.829725 B =23531.698381 C =24343.872416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.729 5.729 13 C 0.695 3.305 14 O -0.643 6.643 15 N -0.728 5.728 16 C 0.140 3.860 17 C -0.123 4.123 18 C 0.122 3.878 19 N -0.712 5.712 20 C 0.586 3.414 21 O -0.577 6.577 22 C -0.305 4.305 23 C -0.064 4.064 24 C -0.162 4.162 25 C -0.221 4.221 26 S 0.248 5.752 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.413 0.587 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.413 0.587 43 H 0.144 0.856 44 H 0.165 0.835 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.995 -35.500 -0.010 42.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.385 5.385 13 C 0.394 3.606 14 O -0.525 6.525 15 N -0.386 5.386 16 C 0.015 3.985 17 C -0.161 4.161 18 C -0.002 4.002 19 N -0.364 5.364 20 C 0.373 3.627 21 O -0.458 6.458 22 C -0.425 4.425 23 C -0.098 4.098 24 C -0.193 4.193 25 C -0.359 4.359 26 S 0.515 5.485 27 H 0.071 0.929 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.250 0.750 35 H 0.253 0.747 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.250 0.750 43 H 0.161 0.839 44 H 0.182 0.818 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 21.758 -34.475 -0.005 40.767 hybrid contribution -0.082 -0.239 -0.012 0.253 sum 21.676 -34.714 -0.016 40.926 Atomic orbital electron populations 1.70123 1.08003 1.27756 1.51754 1.26019 0.95701 1.03544 0.94773 0.85419 0.78719 0.78292 0.78440 1.19844 1.21138 1.18310 1.21696 0.93800 0.91978 1.50403 0.91403 1.18953 0.94501 0.93034 0.95051 1.21584 0.98398 0.91576 1.02209 1.21066 0.91416 0.84754 1.00369 1.44993 1.10861 1.03480 1.79133 1.16212 0.85080 0.81527 0.77762 1.90906 1.16723 1.84881 1.60009 1.44813 1.09406 1.04484 1.79873 1.21022 0.96694 0.78879 1.01887 1.21806 0.97566 0.90939 1.05797 1.21225 0.88271 0.88007 1.02652 1.45685 1.11024 1.04782 1.74925 1.17296 0.87416 0.82396 0.75558 1.90830 1.24700 1.78105 1.52197 1.24605 0.98493 0.98156 1.21236 1.21012 1.00418 0.92146 0.96257 1.20240 0.90329 1.03002 1.05701 1.25801 1.05673 0.97888 1.06505 1.82745 0.93801 1.05566 1.66360 0.92858 0.99024 0.99004 0.91246 0.91224 0.93654 0.93660 0.75013 0.74730 0.92525 0.92533 0.88207 0.88197 0.91625 0.91622 0.75018 0.83866 0.81774 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 11 C 0.15 5.28 5.67 86.38 0.49 5.77 16 12 N -0.73 -19.50 5.56 -478.55 -2.66 -22.16 16 13 C 0.69 20.05 8.57 179.05 1.53 21.58 16 14 O -0.64 -25.63 16.34 -3.99 -0.07 -25.70 16 15 N -0.73 -12.66 5.56 -478.54 -2.66 -15.32 16 16 C 0.14 2.20 5.67 86.38 0.49 2.69 16 17 C -0.12 -0.87 5.44 30.59 0.17 -0.70 16 18 C 0.12 1.48 5.67 86.38 0.49 1.97 16 19 N -0.71 -8.16 5.55 -467.16 -2.59 -10.76 16 20 C 0.59 10.72 7.78 86.42 0.67 11.39 16 21 O -0.58 -15.76 16.84 -4.36 -0.07 -15.83 16 22 C -0.30 -4.17 6.45 24.08 0.16 -4.01 16 23 C -0.06 -0.84 10.01 21.72 0.22 -0.62 16 24 C -0.16 -1.26 10.15 21.08 0.21 -1.05 16 25 C -0.22 -1.08 10.92 66.81 0.73 -0.35 16 26 S 0.25 1.42 22.16 -56.49 -1.25 0.17 16 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 32 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.41 7.78 8.49 -92.70 -0.79 6.99 16 35 H 0.42 3.85 8.49 -92.71 -0.79 3.06 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.41 2.14 7.59 -92.71 -0.70 1.43 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 45 H 0.20 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: -1.00 -83.73 399.80 -2.08 -85.81 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -1.25 Total: 10.33 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.16 Total: 4.93 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -7.63 Total: -105.19 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.14 Total: -41.53 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.25 Total: 0.17 kcal Total: -83.73 -2.08 -85.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.215 kcal (2) G-P(sol) polarization free energy of solvation -83.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds