Wall clock time and date at job start Tue Mar 31 2020 22:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86807 * 119.99571 * 2 1 4 4 H 1.48494 * 109.47086 * 274.99845 * 3 2 1 5 5 H 1.48501 * 109.46658 * 34.99612 * 3 2 1 6 6 H 1.48495 * 109.46848 * 154.99543 * 3 2 1 7 7 C 1.39932 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99643 * 191.14464 * 7 2 1 9 9 C 1.41434 * 120.00192 * 11.15038 * 7 2 1 10 10 C 1.40783 * 120.17767 * 208.76629 * 9 7 2 11 11 C 1.37712 * 120.03951 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41303 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.35773 * 359.97438 * 12 11 10 14 14 C 1.47881 * 120.02577 * 180.02562 * 13 12 11 15 15 O 1.21551 * 120.00269 * 179.97438 * 14 13 12 16 16 N 1.34785 * 119.99859 * 359.97438 * 14 13 12 17 17 C 1.46505 * 119.99921 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.46889 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46992 * 180.02562 * 18 17 16 20 20 O 1.21278 * 120.00099 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00205 * 179.97438 * 19 18 17 22 22 C 1.39543 * 120.00355 * 174.88787 * 21 19 18 23 23 C 1.39399 * 120.85663 * 326.96264 * 22 21 19 24 24 C 1.37950 * 119.07224 * 179.79367 * 23 22 21 25 25 N 1.31972 * 120.83742 * 0.49145 * 24 23 22 26 26 C 1.31966 * 121.89388 * 359.73922 * 25 24 23 27 27 C 1.37945 * 120.84005 * 0.02562 * 26 25 24 28 28 C 1.39029 * 119.94759 * 0.02562 * 13 12 11 29 29 H 0.96995 * 120.00577 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.98351 * 0.04204 * 10 9 7 31 31 H 1.08000 * 119.79526 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.82277 * 179.97438 * 12 11 10 33 33 H 0.96991 * 120.00025 * 0.02562 * 16 14 13 34 34 H 1.09007 * 109.47122 * 300.00438 * 17 16 14 35 35 H 1.09000 * 109.46579 * 60.00239 * 17 16 14 36 36 H 1.09007 * 109.47354 * 300.00000 * 18 17 16 37 37 H 1.09000 * 109.47557 * 60.00542 * 18 17 16 38 38 H 0.96997 * 119.99974 * 354.89287 * 21 19 18 39 39 H 1.07996 * 120.46448 * 359.97438 * 23 22 21 40 40 H 1.07999 * 119.58510 * 180.22258 * 24 23 22 41 41 H 1.07998 * 119.57628 * 180.02562 * 26 25 24 42 42 H 1.07995 * 120.46402 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.20203 * 179.72218 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.3840 2.1075 -1.3947 5 1 1.4963 2.6199 0.8030 6 1 3.5885 1.4122 0.5918 7 6 2.0080 -1.2118 -0.0005 8 1 3.0728 -1.2206 0.1802 9 6 1.3210 -2.4251 -0.2379 10 6 1.7944 -3.6274 0.3208 11 6 1.1235 -4.8072 0.0873 12 6 -0.0177 -4.8211 -0.6950 13 6 -0.5036 -3.6362 -1.2576 14 6 -1.7242 -3.6594 -2.0921 15 8 -2.1464 -2.6294 -2.5804 16 7 -2.3687 -4.8227 -2.3112 17 6 -3.5783 -4.8456 -3.1375 18 6 -4.1086 -6.2780 -3.2257 19 6 -5.3525 -6.3017 -4.0761 20 8 -5.7737 -5.2741 -4.5633 21 7 -5.9969 -7.4650 -4.2953 22 6 -7.2057 -7.4724 -4.9925 23 6 -8.0971 -6.4057 -4.8893 24 6 -9.2798 -6.4495 -5.5980 25 7 -9.5752 -7.4875 -6.3577 26 6 -8.7599 -8.5182 -6.4776 27 6 -7.5557 -8.5493 -5.8054 28 6 0.1620 -2.4367 -1.0317 29 1 -0.4851 0.8400 0.0004 30 1 2.6840 -3.6246 0.9331 31 1 1.4904 -5.7274 0.5176 32 1 -0.5361 -5.7518 -0.8722 33 1 -2.0321 -5.6445 -1.9213 34 1 -4.3372 -4.2046 -2.6887 35 1 -3.3418 -4.4831 -4.1379 36 1 -3.3499 -6.9194 -3.6743 37 1 -4.3452 -6.6402 -2.2252 38 1 -5.6205 -8.2970 -3.9685 39 1 -7.8638 -5.5555 -4.2656 40 1 -9.9748 -5.6259 -5.5270 41 1 -9.0391 -9.3480 -7.1100 42 1 -6.8933 -9.3961 -5.9076 43 1 -0.2070 -1.5201 -1.4677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171006969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:28 Heat of formation + Delta-G solvation = -18.122522 kcal Electronic energy + Delta-G solvation = -26735.614225 eV Core-core repulsion = 22745.227508 eV Total energy + Delta-G solvation = -3990.386717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25878 -39.71788 -39.12177 -37.08838 -35.79687 -34.90018 -33.72276 -31.95234 -31.59990 -30.78151 -29.64656 -29.42961 -25.54450 -24.98594 -23.99632 -23.21115 -21.96078 -21.04549 -20.85423 -19.68137 -18.57036 -17.81163 -17.60114 -16.61044 -16.32947 -16.14320 -15.88351 -15.44843 -15.06098 -15.00812 -14.72015 -14.64947 -14.15073 -14.09350 -13.96273 -13.64676 -13.29822 -13.17129 -12.65735 -12.53546 -12.32081 -12.09311 -11.79171 -11.58065 -11.36939 -11.17826 -11.11625 -10.74612 -10.62133 -10.50724 -10.03441 -9.80613 -9.72727 -9.53737 -9.28123 -9.09677 -9.07637 -8.74961 -7.66948 -7.51500 -6.76034 -4.45390 0.72156 0.80470 2.11957 2.16159 2.35814 2.79160 3.08032 3.11119 3.13106 3.47800 3.57441 3.83375 3.92651 4.12222 4.19760 4.40948 4.54352 4.61701 4.63922 4.71481 4.81442 4.96359 5.09657 5.34691 5.45336 5.55422 5.59564 5.63918 5.77294 5.87623 5.97076 6.06715 6.20559 6.36095 6.66977 6.73865 6.74632 6.95154 6.97722 7.19862 7.34607 7.54868 7.64330 7.65036 7.70535 7.88159 8.04264 8.16081 8.48492 8.79547 8.80458 8.90150 10.18196 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.001767 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.159157 B =15840.234917 C =16852.002373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.207 4.207 11 C -0.101 4.101 12 C -0.214 4.214 13 C -0.131 4.131 14 C 0.564 3.436 15 O -0.540 6.540 16 N -0.741 5.741 17 C 0.136 3.864 18 C -0.151 4.151 19 C 0.520 3.480 20 O -0.504 6.504 21 N -0.675 5.675 22 C 0.194 3.806 23 C -0.177 4.177 24 C 0.118 3.882 25 N -0.500 5.500 26 C 0.116 3.884 27 C -0.204 4.204 28 C -0.085 4.085 29 H 0.284 0.716 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.416 0.584 39 H 0.147 0.853 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 -18.074 -6.896 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.227 4.227 11 C -0.119 4.119 12 C -0.234 4.234 13 C -0.134 4.134 14 C 0.355 3.645 15 O -0.417 6.417 16 N -0.396 5.396 17 C 0.011 3.989 18 C -0.191 4.191 19 C 0.308 3.692 20 O -0.376 6.376 21 N -0.321 5.321 22 C 0.090 3.910 23 C -0.199 4.199 24 C -0.038 4.038 25 N -0.211 5.211 26 C -0.041 4.041 27 C -0.227 4.227 28 C -0.105 4.105 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.252 0.748 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.176 0.824 42 H 0.155 0.845 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.967 -16.348 -7.994 22.940 hybrid contribution 1.510 -0.267 0.935 1.796 sum -12.457 -16.615 -7.059 21.933 Atomic orbital electron populations 1.69754 1.07422 1.29622 1.34832 1.25954 0.94882 1.01482 0.92443 0.86206 0.80298 0.80484 0.79201 1.19292 1.20184 1.18588 1.19593 0.96125 0.90319 1.43002 0.90124 1.17629 0.91451 0.92554 0.88843 1.21163 1.02822 0.93353 1.05326 1.20441 0.95836 0.96711 0.98948 1.20344 1.00521 0.95100 1.07432 1.19476 0.95936 0.95660 1.02338 1.18836 0.83707 0.82273 0.79695 1.90726 1.67495 1.32688 1.50832 1.45901 1.28313 1.11100 1.54239 1.20886 0.87658 0.93483 0.96829 1.21855 0.95322 1.00798 1.01163 1.20794 0.85189 0.82758 0.80484 1.90798 1.66589 1.32289 1.47918 1.43566 1.21289 1.11218 1.56049 1.18019 0.85591 0.95418 0.91930 1.22215 0.94248 1.00323 1.03109 1.22706 0.94424 0.95640 0.91059 1.67712 1.33689 1.01328 1.18333 1.22595 0.89468 0.96068 0.95937 1.21924 1.00542 1.00401 0.99801 1.21697 0.95952 0.95937 0.96933 0.90496 0.88536 0.88856 0.89235 0.76654 0.90822 0.90850 0.87551 0.87411 0.74771 0.83552 0.82298 0.82412 0.84454 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.04 10.86 55.55 0.60 -20.44 16 2 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 3 Si 0.91 18.86 29.57 -169.99 -5.03 13.83 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.03 9.06 -37.73 -0.34 -12.37 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.10 2.55 5.55 -106.87 -0.59 1.96 16 10 C -0.21 -4.79 9.78 -38.81 -0.38 -5.17 16 11 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 12 C -0.21 -4.27 9.55 -38.92 -0.37 -4.64 16 13 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 14 C 0.56 12.08 7.77 -12.31 -0.10 11.99 16 15 O -0.54 -13.65 16.33 5.32 0.09 -13.56 16 16 N -0.74 -11.30 5.51 -61.23 -0.34 -11.64 16 17 C 0.14 1.80 4.96 -4.04 -0.02 1.78 16 18 C -0.15 -1.15 5.82 -27.89 -0.16 -1.31 16 19 C 0.52 4.87 7.60 -10.98 -0.08 4.78 16 20 O -0.50 -6.91 13.70 5.56 0.08 -6.83 16 21 N -0.68 -4.48 5.35 -9.70 -0.05 -4.53 16 22 C 0.19 1.64 6.32 -83.49 -0.53 1.11 16 23 C -0.18 -1.74 8.73 -39.25 -0.34 -2.08 16 24 C 0.12 1.10 11.17 -17.60 -0.20 0.90 16 25 N -0.50 -4.93 10.36 -13.34 -0.14 -5.07 16 26 C 0.12 0.88 11.17 -17.60 -0.20 0.68 16 27 C -0.20 -1.37 10.06 -39.26 -0.39 -1.77 16 28 C -0.09 -2.24 8.19 -38.44 -0.31 -2.56 16 29 H 0.28 6.96 8.30 -40.82 -0.34 6.63 16 30 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.09 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.09 1.41 6.38 -52.49 -0.33 1.07 16 33 H 0.40 4.83 6.49 -40.82 -0.26 4.57 16 34 H 0.07 1.12 8.10 -51.92 -0.42 0.70 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.42 1.21 8.82 -40.82 -0.36 0.85 16 39 H 0.15 1.57 6.50 -52.49 -0.34 1.23 16 40 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.14 3.90 5.82 -52.49 -0.31 3.59 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -34.51 372.82 -9.25 -43.76 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.96 Total: 9.95 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -5.13 Total: -11.09 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.08 Total: -41.68 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.16 Total: -20.39 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.51 -9.25 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171006969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.637 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds