Wall clock time and date at job start Tue Mar 31 2020 22:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86807 * 119.99571 * 2 1 4 4 H 1.48494 * 109.47086 * 274.99845 * 3 2 1 5 5 H 1.48501 * 109.46658 * 34.99612 * 3 2 1 6 6 H 1.48495 * 109.46848 * 154.99543 * 3 2 1 7 7 C 1.39932 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99643 * 191.14464 * 7 2 1 9 9 C 1.41434 * 120.00192 * 11.15038 * 7 2 1 10 10 C 1.40783 * 120.17767 * 208.76629 * 9 7 2 11 11 C 1.37712 * 120.03951 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41303 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.35773 * 359.97438 * 12 11 10 14 14 C 1.47881 * 120.02577 * 180.02562 * 13 12 11 15 15 O 1.21551 * 120.00269 * 179.97438 * 14 13 12 16 16 N 1.34785 * 119.99859 * 359.97438 * 14 13 12 17 17 C 1.46505 * 119.99921 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.46889 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46992 * 180.02562 * 18 17 16 20 20 O 1.21278 * 120.00099 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00205 * 179.97438 * 19 18 17 22 22 C 1.39543 * 120.00355 * 174.88787 * 21 19 18 23 23 C 1.39399 * 120.85663 * 326.96264 * 22 21 19 24 24 C 1.37950 * 119.07224 * 179.79367 * 23 22 21 25 25 N 1.31972 * 120.83742 * 0.49145 * 24 23 22 26 26 C 1.31966 * 121.89388 * 359.73922 * 25 24 23 27 27 C 1.37945 * 120.84005 * 0.02562 * 26 25 24 28 28 C 1.39029 * 119.94759 * 0.02562 * 13 12 11 29 29 H 0.96995 * 120.00577 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.98351 * 0.04204 * 10 9 7 31 31 H 1.08000 * 119.79526 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.82277 * 179.97438 * 12 11 10 33 33 H 0.96991 * 120.00025 * 0.02562 * 16 14 13 34 34 H 1.09007 * 109.47122 * 300.00438 * 17 16 14 35 35 H 1.09000 * 109.46579 * 60.00239 * 17 16 14 36 36 H 1.09007 * 109.47354 * 300.00000 * 18 17 16 37 37 H 1.09000 * 109.47557 * 60.00542 * 18 17 16 38 38 H 0.96997 * 119.99974 * 354.89287 * 21 19 18 39 39 H 1.07996 * 120.46448 * 359.97438 * 23 22 21 40 40 H 1.07999 * 119.58510 * 180.22258 * 24 23 22 41 41 H 1.07998 * 119.57628 * 180.02562 * 26 25 24 42 42 H 1.07995 * 120.46402 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.20203 * 179.72218 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.3840 2.1075 -1.3947 5 1 1.4963 2.6199 0.8030 6 1 3.5885 1.4122 0.5918 7 6 2.0080 -1.2118 -0.0005 8 1 3.0728 -1.2206 0.1802 9 6 1.3210 -2.4251 -0.2379 10 6 1.7944 -3.6274 0.3208 11 6 1.1235 -4.8072 0.0873 12 6 -0.0177 -4.8211 -0.6950 13 6 -0.5036 -3.6362 -1.2576 14 6 -1.7242 -3.6594 -2.0921 15 8 -2.1464 -2.6294 -2.5804 16 7 -2.3687 -4.8227 -2.3112 17 6 -3.5783 -4.8456 -3.1375 18 6 -4.1086 -6.2780 -3.2257 19 6 -5.3525 -6.3017 -4.0761 20 8 -5.7737 -5.2741 -4.5633 21 7 -5.9969 -7.4650 -4.2953 22 6 -7.2057 -7.4724 -4.9925 23 6 -8.0971 -6.4057 -4.8893 24 6 -9.2798 -6.4495 -5.5980 25 7 -9.5752 -7.4875 -6.3577 26 6 -8.7599 -8.5182 -6.4776 27 6 -7.5557 -8.5493 -5.8054 28 6 0.1620 -2.4367 -1.0317 29 1 -0.4851 0.8400 0.0004 30 1 2.6840 -3.6246 0.9331 31 1 1.4904 -5.7274 0.5176 32 1 -0.5361 -5.7518 -0.8722 33 1 -2.0321 -5.6445 -1.9213 34 1 -4.3372 -4.2046 -2.6887 35 1 -3.3418 -4.4831 -4.1379 36 1 -3.3499 -6.9194 -3.6743 37 1 -4.3452 -6.6402 -2.2252 38 1 -5.6205 -8.2970 -3.9685 39 1 -7.8638 -5.5555 -4.2656 40 1 -9.9748 -5.6259 -5.5270 41 1 -9.0391 -9.3480 -7.1100 42 1 -6.8933 -9.3961 -5.9076 43 1 -0.2070 -1.5201 -1.4677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171006969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:28 Heat of formation + Delta-G solvation = -43.143304 kcal Electronic energy + Delta-G solvation = -26736.699208 eV Core-core repulsion = 22745.227508 eV Total energy + Delta-G solvation = -3991.471700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93798 -40.93294 -40.26048 -38.83035 -36.59523 -36.19073 -35.53534 -33.01098 -32.19645 -32.02593 -31.28361 -30.81734 -27.26939 -26.15365 -24.67597 -24.20666 -23.29516 -22.70777 -21.76442 -21.19345 -19.60824 -19.09102 -18.45514 -17.89640 -17.38113 -17.07000 -16.90656 -16.70834 -16.50382 -16.35500 -15.86538 -15.76553 -15.35605 -15.05448 -14.92032 -14.72313 -14.62849 -14.37004 -14.30810 -14.25158 -13.48536 -13.05132 -12.94739 -12.91164 -12.82263 -12.59575 -12.47065 -12.17503 -12.05848 -11.89785 -11.49076 -11.38795 -11.12582 -10.82903 -10.45942 -10.20916 -10.14149 -9.73543 -9.44836 -9.33731 -8.60973 -6.40095 0.09418 0.17813 0.37664 1.02156 1.35977 1.44189 1.46649 1.50722 1.65894 2.09856 2.19920 2.35386 2.81631 2.86057 3.44354 3.57797 3.69565 3.71951 3.91383 4.02098 4.03842 4.06225 4.22824 4.38966 4.44865 4.50040 4.61285 4.76034 4.77898 4.84422 4.87682 4.96191 5.02712 5.10208 5.20396 5.27219 5.32806 5.38921 5.53294 5.75934 5.87669 5.92032 6.07410 6.22842 6.30469 6.52556 6.70096 6.89863 6.94458 6.95932 7.02578 7.31593 8.34938 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.001767 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.159157 B =15840.234917 C =16852.002373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.024 3.976 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.063 3.937 10 C -0.209 4.209 11 C -0.099 4.099 12 C -0.185 4.185 13 C -0.143 4.143 14 C 0.559 3.441 15 O -0.593 6.593 16 N -0.708 5.708 17 C 0.134 3.866 18 C -0.133 4.133 19 C 0.520 3.480 20 O -0.558 6.558 21 N -0.654 5.654 22 C 0.180 3.820 23 C -0.197 4.197 24 C 0.105 3.895 25 N -0.525 5.525 26 C 0.109 3.891 27 C -0.191 4.191 28 C -0.126 4.126 29 H 0.283 0.717 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.419 0.581 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.437 0.563 39 H 0.128 0.872 40 H 0.168 0.832 41 H 0.188 0.812 42 H 0.175 0.825 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.697 -22.978 -6.556 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.529 4.529 8 H 0.101 0.899 9 C 0.061 3.939 10 C -0.229 4.229 11 C -0.117 4.117 12 C -0.204 4.204 13 C -0.146 4.146 14 C 0.349 3.651 15 O -0.474 6.474 16 N -0.363 5.363 17 C 0.010 3.990 18 C -0.173 4.173 19 C 0.308 3.692 20 O -0.434 6.434 21 N -0.302 5.302 22 C 0.076 3.924 23 C -0.219 4.219 24 C -0.051 4.051 25 N -0.236 5.236 26 C -0.048 4.048 27 C -0.213 4.213 28 C -0.147 4.147 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.258 0.742 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.278 0.722 39 H 0.146 0.854 40 H 0.185 0.815 41 H 0.205 0.795 42 H 0.193 0.807 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.233 -21.382 -7.628 26.277 hybrid contribution 1.204 0.955 0.780 1.723 sum -12.029 -20.426 -6.849 24.675 Atomic orbital electron populations 1.69880 1.09088 1.30226 1.37106 1.26840 0.95517 1.04909 0.91599 0.85151 0.79304 0.75963 0.79056 1.19355 1.19555 1.17264 1.19864 0.96411 0.91481 1.45157 0.89883 1.17966 0.92072 0.94041 0.89818 1.21494 1.03258 0.93470 1.04696 1.20980 0.95178 0.97465 0.98040 1.20950 0.99621 0.95772 1.04092 1.19779 0.96338 0.95861 1.02625 1.18797 0.83706 0.83234 0.79403 1.90705 1.68750 1.35059 1.52882 1.45546 1.27842 1.09881 1.52984 1.20899 0.86013 0.97330 0.94740 1.21770 0.95179 0.97068 1.03241 1.21106 0.85481 0.82611 0.79961 1.90804 1.68066 1.34363 1.50181 1.43327 1.20321 1.11410 1.55096 1.18222 0.85904 0.95602 0.92640 1.22185 0.95279 1.00675 1.03781 1.22864 0.94720 0.96197 0.91318 1.67737 1.34892 1.02117 1.18891 1.23195 0.89497 0.96103 0.96018 1.22256 1.00487 1.00528 0.97985 1.21477 0.97836 0.96160 0.99217 0.90612 0.87288 0.83852 0.83496 0.74153 0.93351 0.93148 0.83577 0.83797 0.72206 0.85385 0.81531 0.79477 0.80749 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.74 10.86 21.82 0.24 -47.50 16 2 C 0.02 1.30 5.24 85.25 0.45 1.75 16 3 Si 0.98 40.50 29.57 68.60 2.03 42.53 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.50 -27.31 9.06 23.47 0.21 -27.10 16 8 H 0.08 4.28 7.87 -2.91 -0.02 4.25 16 9 C 0.06 3.41 5.55 -21.32 -0.12 3.29 16 10 C -0.21 -9.45 9.78 22.77 0.22 -9.23 16 11 C -0.10 -3.62 10.01 22.18 0.22 -3.40 16 12 C -0.18 -6.60 9.55 22.70 0.22 -6.39 16 13 C -0.14 -6.53 5.87 -20.14 -0.12 -6.65 16 14 C 0.56 24.05 7.77 86.80 0.67 24.72 16 15 O -0.59 -31.69 16.33 -3.88 -0.06 -31.75 16 16 N -0.71 -19.89 5.51 -465.92 -2.57 -22.45 16 17 C 0.13 3.42 4.96 86.38 0.43 3.85 16 18 C -0.13 -1.50 5.82 29.85 0.17 -1.33 16 19 C 0.52 8.70 7.60 87.66 0.67 9.37 16 20 O -0.56 -15.62 13.70 -3.02 -0.04 -15.66 16 21 N -0.65 -6.69 5.35 -303.01 -1.62 -8.31 16 22 C 0.18 2.72 6.32 38.47 0.24 2.97 16 23 C -0.20 -3.95 8.73 22.48 0.20 -3.75 16 24 C 0.10 2.01 11.17 84.60 0.95 2.96 16 25 N -0.53 -10.02 10.36 -196.11 -2.03 -12.05 16 26 C 0.11 1.39 11.17 84.60 0.95 2.34 16 27 C -0.19 -1.96 10.06 22.48 0.23 -1.74 16 28 C -0.13 -7.00 8.19 23.01 0.19 -6.81 16 29 H 0.28 15.02 8.30 -92.71 -0.77 14.25 16 30 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 31 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.15 3.52 6.38 -2.91 -0.02 3.50 16 33 H 0.42 7.93 6.49 -92.71 -0.60 7.32 16 34 H 0.05 1.50 8.10 -2.38 -0.02 1.48 16 35 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.15 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.44 0.45 8.82 -92.71 -0.82 -0.37 16 39 H 0.13 2.99 6.50 -2.91 -0.02 2.98 16 40 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 43 H 0.09 5.97 5.82 -2.91 -0.02 5.96 16 Total: -1.00 -86.21 372.82 1.38 -84.83 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.34 Total: 25.51 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 5.77 Total: -15.14 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -5.98 Total: -90.32 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.10 Total: -47.41 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -86.21 1.38 -84.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171006969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.687 kcal (2) G-P(sol) polarization free energy of solvation -86.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds