Wall clock time and date at job start Tue Mar 31 2020 22:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38292 * 119.92699 * 2 1 4 4 C 1.38095 * 120.07775 * 179.72113 * 3 2 1 5 5 C 1.38906 * 119.92512 * 0.26183 * 4 3 2 6 6 N 1.39810 * 120.07653 * 180.02562 * 5 4 3 7 7 C 1.46500 * 120.00272 * 172.88163 * 6 5 4 8 8 C 1.50696 * 109.46871 * 96.62992 * 7 6 5 9 9 H 1.07996 * 120.00105 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99615 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99959 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99636 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47527 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.46833 * 119.99879 * 12 10 8 15 15 H 1.48501 * 109.47059 * 239.99337 * 12 10 8 16 16 C 1.34777 * 119.99730 * 352.88790 * 6 5 4 17 17 O 1.21512 * 120.00465 * 5.95927 * 16 6 5 18 18 C 1.48291 * 120.00157 * 185.96398 * 16 6 5 19 19 C 1.39322 * 119.57382 * 175.61625 * 18 16 6 20 20 C 1.38437 * 119.18837 * 179.79252 * 19 18 16 21 21 C 1.39880 * 118.35849 * 0.46740 * 20 19 18 22 22 C 1.47999 * 120.46174 * 179.76928 * 21 20 19 23 23 N 1.34781 * 119.99941 * 179.97438 * 22 21 20 24 24 O 1.21526 * 120.00087 * 359.97438 * 22 21 20 25 25 C 1.39725 * 119.07945 * 359.75590 * 21 20 19 26 26 N 1.31414 * 120.71816 * 0.02562 * 25 21 20 27 27 C 1.38904 * 119.85473 * 359.97438 * 5 4 3 28 28 C 1.38102 * 119.92427 * 0.02562 * 27 5 4 29 29 H 1.08995 * 109.47413 * 90.00244 * 1 2 3 30 30 H 1.09006 * 109.46994 * 209.99950 * 1 2 3 31 31 H 1.08993 * 109.47431 * 329.99596 * 1 2 3 32 32 H 1.08001 * 119.95583 * 0.02562 * 3 2 1 33 33 H 1.07996 * 120.04275 * 180.27774 * 4 3 2 34 34 H 1.09003 * 109.47194 * 216.62753 * 7 6 5 35 35 H 1.09000 * 109.46958 * 336.62271 * 7 6 5 36 36 H 0.97002 * 119.99521 * 180.02562 * 11 10 8 37 37 H 1.07994 * 120.40793 * 359.97438 * 19 18 16 38 38 H 1.08000 * 120.82540 * 180.19929 * 20 19 18 39 39 H 0.96993 * 120.00123 * 0.02562 * 23 22 21 40 40 H 0.97004 * 119.99303 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.64382 * 179.97438 * 25 21 20 42 42 H 1.07998 * 120.03845 * 179.97438 * 27 5 4 43 43 H 1.07995 * 119.96690 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5778 1.2022 0.0058 5 6 4.2739 0.0001 0.0062 6 7 5.6720 0.0001 0.0126 7 6 6.4039 -1.2592 0.1702 8 6 6.8033 -1.7810 -1.1859 9 1 6.5382 -1.2301 -2.0761 10 6 7.5064 -2.9626 -1.2901 11 7 7.8288 -3.6337 -0.2061 12 14 8.0009 -3.6099 -2.9712 13 1 7.5211 -2.6766 -4.0219 14 1 9.4800 -3.7195 -3.0438 15 1 7.3943 -4.9485 -3.1842 16 6 6.3465 1.1587 -0.1261 17 8 5.7440 2.2137 -0.1479 18 6 7.8240 1.1461 -0.2522 19 6 8.5043 2.3390 -0.4869 20 6 9.8840 2.3186 -0.5990 21 6 10.5421 1.0900 -0.4807 22 6 12.0155 1.0137 -0.5979 23 7 12.6401 -0.1750 -0.4819 24 8 12.6621 2.0228 -0.7987 25 6 9.7892 -0.0643 -0.2502 26 7 8.4807 -0.0025 -0.1455 27 6 3.5780 -1.2020 0.0012 28 6 2.1970 -1.1985 -0.0046 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6550 2.1327 0.0004 33 1 4.1160 2.1385 0.0103 34 1 7.2970 -1.0876 0.7710 35 1 5.7663 -1.9901 0.6676 36 1 8.3237 -4.4647 -0.2795 37 1 7.9623 3.2687 -0.5775 38 1 10.4382 3.2282 -0.7777 39 1 12.1240 -0.9805 -0.3220 40 1 13.6058 -0.2250 -0.5591 41 1 10.2879 -1.0178 -0.1578 42 1 4.1162 -2.1383 0.0010 43 1 1.6552 -2.1327 -0.0080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171029573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:04 Heat of formation + Delta-G solvation = 26.152336 kcal Electronic energy + Delta-G solvation = -28996.524101 eV Core-core repulsion = 25008.057286 eV Total energy + Delta-G solvation = -3988.466816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83338 -39.92104 -38.72248 -37.77260 -35.56825 -33.92683 -32.88462 -32.38332 -31.55096 -30.78136 -30.37860 -27.53704 -26.53909 -24.80121 -23.48056 -23.41545 -21.76484 -21.71432 -20.66195 -19.63443 -18.12980 -17.40423 -16.85647 -16.64289 -16.54526 -15.79618 -15.24116 -14.98026 -14.83168 -14.74551 -14.66001 -14.44074 -13.91200 -13.67915 -13.49826 -13.14366 -13.07426 -12.99583 -12.90472 -12.48246 -12.35581 -11.94212 -11.81406 -11.50417 -11.30118 -11.03667 -10.88927 -10.57738 -10.31662 -10.28596 -10.03564 -9.81734 -9.74559 -9.11954 -9.05256 -9.00845 -8.71702 -8.38967 -8.28812 -7.14742 -6.18160 -4.17569 0.44688 1.45379 1.79407 1.97130 2.69128 3.14542 3.25044 3.26340 3.33233 3.39510 3.49015 4.15961 4.26645 4.39722 4.44363 4.83967 4.89160 4.96470 5.12264 5.18117 5.27941 5.29332 5.37540 5.55907 5.62675 5.78761 5.82990 5.94488 6.04768 6.05855 6.10462 6.18063 6.25896 6.51647 6.60068 6.67284 6.79882 6.91512 6.95554 7.12153 7.21174 7.27039 7.45973 7.71856 7.78304 8.01541 8.06067 8.09880 8.16739 8.61065 8.81906 9.41323 10.89163 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011730 B = 0.004051 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.478438 B = 6910.806454 C = 8842.066184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.175 4.175 5 C 0.159 3.841 6 N -0.512 5.512 7 C 0.220 3.780 8 C -0.496 4.496 9 H 0.053 0.947 10 C 0.071 3.929 11 N -0.887 5.887 12 Si 0.883 3.117 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.566 3.434 17 O -0.537 6.537 18 C 0.106 3.894 19 C -0.126 4.126 20 C -0.035 4.035 21 C -0.185 4.185 22 C 0.573 3.427 23 N -0.848 5.848 24 O -0.545 6.545 25 C 0.132 3.868 26 N -0.379 5.379 27 C -0.138 4.138 28 C -0.104 4.104 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.115 0.885 33 H 0.179 0.821 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.406 0.594 40 H 0.405 0.595 41 H 0.161 0.839 42 H 0.139 0.861 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 4.787 1.990 5.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.130 4.130 3 C -0.126 4.126 4 C -0.194 4.194 5 C 0.063 3.937 6 N -0.228 5.228 7 C 0.102 3.898 8 C -0.536 4.536 9 H 0.071 0.929 10 C -0.131 4.131 11 N -0.526 5.526 12 Si 0.711 3.289 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.355 3.645 17 O -0.417 6.417 18 C -0.033 4.033 19 C -0.147 4.147 20 C -0.061 4.061 21 C -0.190 4.190 22 C 0.358 3.642 23 N -0.412 5.412 24 O -0.423 6.423 25 C -0.028 4.028 26 N -0.088 5.088 27 C -0.158 4.158 28 C -0.123 4.123 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.195 0.805 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.236 0.764 40 H 0.236 0.764 41 H 0.178 0.822 42 H 0.157 0.843 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.723 5.102 2.076 5.556 hybrid contribution 1.030 -0.573 -1.274 1.736 sum 0.307 4.530 0.801 4.610 Atomic orbital electron populations 1.20667 0.92035 1.01912 1.01517 1.19811 0.95481 0.93533 1.04150 1.20898 0.93968 0.96829 1.00920 1.22730 0.94389 1.00177 1.02090 1.18101 0.82642 0.94363 0.98582 1.45983 1.04092 1.10359 1.62408 1.20364 0.92711 0.77661 0.99084 1.21186 1.34468 1.06133 0.91764 0.92891 1.24717 0.95822 0.96432 0.96129 1.69935 1.39527 1.15963 1.27140 0.86678 0.78280 0.79051 0.84896 1.19995 1.20934 1.20907 1.18063 0.86045 0.83282 0.77109 1.90339 1.67149 1.31868 1.52360 1.21291 0.94431 0.89745 0.97799 1.22036 0.94086 0.99556 0.99010 1.21553 0.93539 0.97575 0.93447 1.21143 0.93955 0.96447 1.07469 1.18146 0.87268 0.83346 0.75402 1.43766 1.11866 1.09805 1.75789 1.90786 1.67299 1.35022 1.49200 1.23208 0.90072 0.96888 0.92671 1.68790 1.07876 1.24231 1.07936 1.21119 0.94033 0.97715 1.02916 1.20739 0.93435 0.97116 1.00973 0.92008 0.92177 0.92242 0.86730 0.80483 0.89513 0.94482 0.92862 0.83247 0.83454 0.76393 0.76439 0.82228 0.84284 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.01 36.00 0.36 -0.85 16 2 C -0.13 -1.98 5.88 -104.58 -0.62 -2.59 16 3 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 4 C -0.17 -3.29 9.05 -39.39 -0.36 -3.65 16 5 C 0.16 3.24 6.49 -83.73 -0.54 2.69 16 6 N -0.51 -10.91 2.70 -115.64 -0.31 -11.22 16 7 C 0.22 5.00 4.24 -5.20 -0.02 4.98 16 8 C -0.50 -12.12 7.60 -34.44 -0.26 -12.38 16 9 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -22.16 13.29 55.43 0.74 -21.42 16 12 Si 0.88 19.54 29.54 -169.99 -5.02 14.52 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.57 11.54 7.55 -12.13 -0.09 11.45 16 17 O -0.54 -10.92 12.72 5.36 0.07 -10.86 16 18 C 0.11 1.96 6.60 -82.94 -0.55 1.42 16 19 C -0.13 -1.95 9.62 -39.10 -0.38 -2.33 16 20 C -0.03 -0.50 9.71 -38.89 -0.38 -0.87 16 21 C -0.18 -2.70 5.90 -104.73 -0.62 -3.32 16 22 C 0.57 7.94 8.06 -12.26 -0.10 7.84 16 23 N -0.85 -8.52 8.83 30.56 0.27 -8.25 16 24 O -0.54 -9.11 17.25 5.34 0.09 -9.02 16 25 C 0.13 2.11 10.71 -17.18 -0.18 1.93 16 26 N -0.38 -7.22 4.77 -9.49 -0.05 -7.26 16 27 C -0.14 -2.64 9.16 -39.38 -0.36 -3.00 16 28 C -0.10 -1.71 9.69 -39.61 -0.38 -2.09 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.18 3.47 4.53 -56.24 -0.25 3.22 16 34 H 0.09 2.03 5.53 -51.93 -0.29 1.74 16 35 H 0.04 0.89 6.15 -51.93 -0.32 0.57 16 36 H 0.26 6.26 8.31 -40.82 -0.34 5.92 16 37 H 0.15 2.08 7.64 -52.49 -0.40 1.68 16 38 H 0.15 1.85 7.73 -52.49 -0.41 1.45 16 39 H 0.41 3.50 6.89 -40.82 -0.28 3.22 16 40 H 0.40 3.27 8.93 -40.82 -0.36 2.90 16 41 H 0.16 2.25 6.41 -52.49 -0.34 1.91 16 42 H 0.14 2.82 6.21 -52.49 -0.33 2.49 16 43 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -29.41 362.37 -8.34 -37.75 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.63 Total: 11.56 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -4.96 Total: -1.26 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.65 Total: -48.15 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.16 Total: -19.87 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.41 -8.34 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171029573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.903 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds