Wall clock time and date at job start Tue Mar 31 2020 22:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48500 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46869 * 299.99564 * 3 2 1 6 6 H 1.48498 * 109.47057 * 59.99452 * 3 2 1 7 7 C 1.37884 * 119.99396 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00353 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99671 * 275.76526 * 10 9 7 12 12 C 1.50699 * 109.47171 * 270.00107 * 11 10 9 13 13 C 1.38227 * 119.61519 * 94.73067 * 12 11 10 14 14 C 1.38630 * 119.15723 * 179.75321 * 13 12 11 15 15 C 1.38671 * 118.42117 * 0.51048 * 14 13 12 16 16 C 1.38182 * 119.16333 * 359.72848 * 15 14 13 17 17 N 1.31854 * 119.61918 * 275.00008 * 12 11 10 18 18 C 1.34769 * 120.00401 * 95.76707 * 10 9 7 19 19 O 1.21555 * 120.00549 * 185.06642 * 18 10 9 20 20 C 1.47868 * 119.99656 * 5.07040 * 18 10 9 21 21 C 1.39705 * 120.07204 * 311.47516 * 20 18 10 22 22 C 1.38053 * 120.14235 * 180.30191 * 21 20 18 23 23 C 1.38104 * 120.29823 * 359.95245 * 22 21 20 24 24 C 1.39661 * 120.14529 * 0.04510 * 23 22 21 25 25 C 1.47863 * 120.07315 * 179.97438 * 24 23 22 26 26 N 1.34775 * 120.00040 * 0.02721 * 25 24 23 27 27 O 1.21557 * 119.99707 * 180.02562 * 25 24 23 28 28 C 1.39298 * 120.07303 * 131.75606 * 20 18 10 29 29 H 0.96999 * 119.99549 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46611 * 60.00451 * 9 7 2 31 31 H 1.08999 * 109.47250 * 300.00496 * 9 7 2 32 32 H 1.08993 * 109.47106 * 30.00388 * 11 10 9 33 33 H 1.09001 * 109.46690 * 150.00441 * 11 10 9 34 34 H 1.07999 * 120.42072 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.79239 * 180.25947 * 14 13 12 36 36 H 1.08001 * 120.41970 * 179.71069 * 15 14 13 37 37 H 1.08000 * 119.61609 * 179.97438 * 16 15 14 38 38 H 1.08000 * 119.92595 * 0.25342 * 21 20 18 39 39 H 1.08002 * 119.85006 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.92546 * 180.02562 * 23 22 21 41 41 H 0.97004 * 119.99829 * 359.97438 * 26 25 24 42 42 H 0.97002 * 120.00027 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.14452 * 359.69403 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0027 11 6 2.7757 -4.0878 -1.2593 12 6 1.8976 -5.1694 -1.8339 13 6 0.9329 -4.8416 -2.7680 14 6 0.1338 -5.8448 -3.2942 15 6 0.3287 -7.1444 -2.8513 16 6 1.3097 -7.3954 -1.9111 17 7 2.0549 -6.4165 -1.4359 18 6 2.5516 -4.2002 1.1644 19 8 3.4093 -5.0614 1.1766 20 6 1.8908 -3.7970 2.4243 21 6 1.7664 -2.4436 2.7475 22 6 1.1553 -2.0657 3.9263 23 6 0.6623 -3.0213 4.7930 24 6 0.7800 -4.3778 4.4820 25 6 0.2521 -5.3995 5.4113 26 7 -0.3440 -5.0223 6.5597 27 8 0.3558 -6.5798 5.1395 28 6 1.3962 -4.7660 3.2942 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6245 -2.5563 0.8919 32 1 2.8395 -3.2589 -1.9641 33 1 3.7732 -4.4879 -1.0776 34 1 0.8057 -3.8175 -3.0865 35 1 -0.6252 -5.6191 -4.0286 36 1 -0.2788 -7.9502 -3.2362 37 1 1.4674 -8.4047 -1.5607 38 1 2.1499 -1.6913 2.0741 39 1 1.0620 -1.0181 4.1717 40 1 0.1849 -2.7190 5.7134 41 1 -0.4263 -4.0804 6.7767 42 1 -0.6906 -5.6926 7.1692 43 1 1.4895 -5.8137 3.0488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171547472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:42 Heat of formation + Delta-G solvation = -5.288104 kcal Electronic energy + Delta-G solvation = -28955.004382 eV Core-core repulsion = 24965.174207 eV Total energy + Delta-G solvation = -3989.830175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.23210 -39.84353 -38.96685 -37.31652 -35.21988 -33.82404 -33.00618 -32.19279 -31.65668 -30.70242 -30.46709 -27.70159 -26.33558 -23.87323 -23.47077 -23.23036 -22.70752 -21.56311 -20.65083 -18.99980 -17.81526 -16.95091 -16.76853 -16.42305 -16.11427 -15.86597 -15.63513 -15.48353 -15.26048 -14.66557 -14.60193 -14.45028 -14.07519 -13.77823 -13.47266 -13.28539 -13.07334 -12.73008 -12.68641 -12.38150 -12.11311 -11.90878 -11.54262 -11.36616 -11.28423 -11.01284 -10.95769 -10.75239 -10.30355 -9.97341 -9.89849 -9.73688 -9.64009 -9.23151 -9.12008 -8.77743 -8.74374 -8.65042 -8.43184 -7.82340 -6.32863 -4.41671 1.09924 1.31192 1.51176 1.53728 2.97902 3.11400 3.21994 3.25729 3.39446 3.56364 3.75274 4.17671 4.20898 4.32344 4.62623 4.90145 4.95821 4.98573 5.01899 5.05661 5.23384 5.27268 5.33214 5.41504 5.71425 5.78745 5.80541 5.84284 6.00508 6.13110 6.22618 6.25679 6.36887 6.40131 6.45873 6.64017 6.74215 6.78280 6.87288 6.93826 7.10990 7.20116 7.33119 7.43899 7.61797 7.90555 8.22158 8.28163 8.34664 8.66075 8.94234 9.26023 10.72339 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006625 B = 0.005591 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4225.710310 B = 5006.533019 C = 8279.192595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.892 3.108 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.229 3.771 10 N -0.586 5.586 11 C 0.168 3.832 12 C 0.119 3.881 13 C -0.155 4.155 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.093 3.907 17 N -0.460 5.460 18 C 0.560 3.440 19 O -0.543 6.543 20 C -0.128 4.128 21 C -0.038 4.038 22 C -0.137 4.137 23 C -0.073 4.073 24 C -0.166 4.166 25 C 0.569 3.431 26 N -0.855 5.855 27 O -0.543 6.543 28 C -0.014 4.014 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.175 0.825 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.400 0.600 42 H 0.402 0.598 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -4.558 3.073 6.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.110 3.890 10 N -0.316 5.316 11 C 0.044 3.956 12 C -0.020 4.020 13 C -0.175 4.175 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.065 4.065 17 N -0.170 5.170 18 C 0.348 3.652 19 O -0.421 6.421 20 C -0.131 4.131 21 C -0.056 4.056 22 C -0.155 4.155 23 C -0.092 4.092 24 C -0.169 4.169 25 C 0.356 3.644 26 N -0.419 5.419 27 O -0.421 6.421 28 C -0.034 4.034 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.192 0.808 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.230 0.770 42 H 0.232 0.768 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.818 -5.763 3.353 6.911 hybrid contribution -0.876 1.468 -0.322 1.740 sum -2.694 -4.295 3.030 5.907 Atomic orbital electron populations 1.69948 1.06012 1.27419 1.48369 1.24959 0.94812 0.99225 0.94455 0.86521 0.80357 0.83227 0.77980 1.19400 1.20744 1.20672 1.21521 0.93897 0.90281 1.52577 0.91501 1.19670 0.87758 0.82395 0.99205 1.48022 1.45387 1.34180 1.04022 1.20137 0.95855 0.93266 0.86342 1.21886 0.95060 0.92419 0.92684 1.22114 0.96309 1.00799 0.98284 1.21545 0.97998 0.92819 0.98343 1.22094 1.00365 0.97608 1.00054 1.22766 0.91765 0.98473 0.93459 1.67633 1.25441 1.00201 1.23683 1.18213 0.82328 0.81071 0.83589 1.90739 1.32179 1.32554 1.86666 1.19928 1.02879 0.94184 0.96157 1.22718 0.91360 0.96200 0.95366 1.21088 1.00140 0.99627 0.94658 1.21329 0.97229 0.91846 0.98805 1.19566 1.06960 0.93129 0.97262 1.18312 0.76698 0.88266 0.81115 1.43735 1.63032 1.12135 1.22988 1.90806 1.57613 1.18373 1.75324 1.21168 0.91652 0.99879 0.90689 0.92368 0.94752 0.93534 0.88377 0.88903 0.84417 0.85138 0.85316 0.83227 0.80838 0.85100 0.86076 0.77018 0.76782 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.09 13.29 55.43 0.74 -21.36 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 18.67 29.54 -169.99 -5.02 13.65 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -12.68 6.85 -34.44 -0.24 -12.92 16 8 H 0.07 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.23 5.12 4.67 -5.20 -0.02 5.10 16 10 N -0.59 -12.28 2.44 -177.55 -0.43 -12.71 16 11 C 0.17 3.16 5.77 -5.19 -0.03 3.13 16 12 C 0.12 2.12 6.36 -82.59 -0.53 1.60 16 13 C -0.15 -2.40 9.72 -39.44 -0.38 -2.78 16 14 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16 15 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 16 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 17 N -0.46 -8.55 10.27 -9.47 -0.10 -8.64 16 18 C 0.56 12.32 7.24 -12.32 -0.09 12.23 16 19 O -0.54 -13.07 16.57 5.32 0.09 -12.98 16 20 C -0.13 -2.59 4.94 -105.01 -0.52 -3.10 16 21 C -0.04 -0.73 7.52 -39.10 -0.29 -1.02 16 22 C -0.14 -2.14 10.02 -39.70 -0.40 -2.53 16 23 C -0.07 -1.00 9.54 -39.10 -0.37 -1.37 16 24 C -0.17 -2.67 5.87 -105.02 -0.62 -3.29 16 25 C 0.57 8.68 8.05 -12.32 -0.10 8.58 16 26 N -0.85 -8.40 8.82 30.53 0.27 -8.13 16 27 O -0.54 -10.42 17.18 5.32 0.09 -10.33 16 28 C -0.01 -0.27 9.26 -38.78 -0.36 -0.63 16 29 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 30 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.05 1.10 5.40 -51.93 -0.28 0.82 16 32 H 0.10 1.69 7.97 -51.93 -0.41 1.27 16 33 H 0.09 1.81 7.36 -51.93 -0.38 1.42 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.17 3.60 4.74 -52.49 -0.25 3.35 16 39 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.12 1.12 6.39 -52.48 -0.34 0.78 16 41 H 0.40 2.78 6.85 -40.82 -0.28 2.50 16 42 H 0.40 3.24 8.93 -40.82 -0.36 2.87 16 43 H 0.14 2.75 7.65 -52.48 -0.40 2.34 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -31.95 371.98 -8.59 -40.53 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -4.79 Total: 12.80 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -5.04 Total: 1.57 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.48 Total: -50.85 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.18 Total: -23.31 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.95 -8.59 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171547472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.243 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds