Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48500 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46869 * 299.99564 * 3 2 1 6 6 H 1.48498 * 109.47057 * 59.99452 * 3 2 1 7 7 C 1.37884 * 119.99396 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00353 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99671 * 275.76526 * 10 9 7 12 12 C 1.50699 * 109.47171 * 270.00107 * 11 10 9 13 13 C 1.38227 * 119.61519 * 94.73067 * 12 11 10 14 14 C 1.38630 * 119.15723 * 179.75321 * 13 12 11 15 15 C 1.38671 * 118.42117 * 0.51048 * 14 13 12 16 16 C 1.38182 * 119.16333 * 359.72848 * 15 14 13 17 17 N 1.31854 * 119.61918 * 275.00008 * 12 11 10 18 18 C 1.34769 * 120.00401 * 95.76707 * 10 9 7 19 19 O 1.21555 * 120.00549 * 185.06642 * 18 10 9 20 20 C 1.47868 * 119.99656 * 5.07040 * 18 10 9 21 21 C 1.39705 * 120.07204 * 311.47516 * 20 18 10 22 22 C 1.38053 * 120.14235 * 180.30191 * 21 20 18 23 23 C 1.38104 * 120.29823 * 359.95245 * 22 21 20 24 24 C 1.39661 * 120.14529 * 0.04510 * 23 22 21 25 25 C 1.47863 * 120.07315 * 179.97438 * 24 23 22 26 26 N 1.34775 * 120.00040 * 0.02721 * 25 24 23 27 27 O 1.21557 * 119.99707 * 180.02562 * 25 24 23 28 28 C 1.39298 * 120.07303 * 131.75606 * 20 18 10 29 29 H 0.96999 * 119.99549 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46611 * 60.00451 * 9 7 2 31 31 H 1.08999 * 109.47250 * 300.00496 * 9 7 2 32 32 H 1.08993 * 109.47106 * 30.00388 * 11 10 9 33 33 H 1.09001 * 109.46690 * 150.00441 * 11 10 9 34 34 H 1.07999 * 120.42072 * 359.97438 * 13 12 11 35 35 H 1.08002 * 120.79239 * 180.25947 * 14 13 12 36 36 H 1.08001 * 120.41970 * 179.71069 * 15 14 13 37 37 H 1.08000 * 119.61609 * 179.97438 * 16 15 14 38 38 H 1.08000 * 119.92595 * 0.25342 * 21 20 18 39 39 H 1.08002 * 119.85006 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.92546 * 180.02562 * 23 22 21 41 41 H 0.97004 * 119.99829 * 359.97438 * 26 25 24 42 42 H 0.97002 * 120.00027 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.14452 * 359.69403 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3461 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0027 11 6 2.7757 -4.0878 -1.2593 12 6 1.8976 -5.1694 -1.8339 13 6 0.9329 -4.8416 -2.7680 14 6 0.1338 -5.8448 -3.2942 15 6 0.3287 -7.1444 -2.8513 16 6 1.3097 -7.3954 -1.9111 17 7 2.0549 -6.4165 -1.4359 18 6 2.5516 -4.2002 1.1644 19 8 3.4093 -5.0614 1.1766 20 6 1.8908 -3.7970 2.4243 21 6 1.7664 -2.4436 2.7475 22 6 1.1553 -2.0657 3.9263 23 6 0.6623 -3.0213 4.7930 24 6 0.7800 -4.3778 4.4820 25 6 0.2521 -5.3995 5.4113 26 7 -0.3440 -5.0223 6.5597 27 8 0.3558 -6.5798 5.1395 28 6 1.3962 -4.7660 3.2942 29 1 -0.4849 0.8401 -0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6245 -2.5563 0.8919 32 1 2.8395 -3.2589 -1.9641 33 1 3.7732 -4.4879 -1.0776 34 1 0.8057 -3.8175 -3.0865 35 1 -0.6252 -5.6191 -4.0286 36 1 -0.2788 -7.9502 -3.2362 37 1 1.4674 -8.4047 -1.5607 38 1 2.1499 -1.6913 2.0741 39 1 1.0620 -1.0181 4.1717 40 1 0.1849 -2.7190 5.7134 41 1 -0.4263 -4.0804 6.7767 42 1 -0.6906 -5.6926 7.1692 43 1 1.4895 -5.8137 3.0488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171547472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = -27.178515 kcal Electronic energy + Delta-G solvation = -28955.953622 eV Core-core repulsion = 24965.174207 eV Total energy + Delta-G solvation = -3990.779415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65692 -41.07592 -40.38886 -38.72574 -36.94872 -34.96875 -34.70396 -33.44636 -33.02201 -32.06012 -31.77099 -29.42832 -27.83031 -25.22722 -25.07745 -24.47101 -24.15857 -22.86962 -21.93436 -20.42176 -19.08989 -18.65768 -18.00850 -17.82206 -17.50765 -17.26564 -16.97887 -16.89576 -16.55667 -16.28859 -15.99312 -15.81158 -15.45532 -15.12508 -14.80067 -14.63752 -14.34201 -14.23181 -14.14720 -13.91468 -13.66922 -13.35884 -13.06489 -12.79999 -12.68329 -12.61901 -12.52486 -12.33317 -12.03625 -11.69652 -11.28116 -10.92288 -10.79767 -10.76853 -10.58245 -10.37947 -10.01885 -9.98054 -9.86266 -9.52380 -8.17299 -6.31505 -0.21846 0.10736 0.11738 0.39175 1.44867 1.50806 1.58893 1.62502 1.91409 2.19939 2.45022 2.51650 2.86219 2.97738 3.11583 3.38680 3.57878 3.80526 3.83982 3.91607 4.00743 4.08111 4.18738 4.24917 4.28107 4.46014 4.51179 4.59373 4.76408 4.78646 4.85733 4.86661 4.89588 5.14030 5.20718 5.22719 5.27591 5.43431 5.44839 5.66366 5.77911 5.80708 5.81440 5.88649 6.05991 6.38785 6.49621 6.80024 7.12291 7.21804 7.26418 7.40005 8.88170 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006625 B = 0.005591 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4225.710310 B = 5006.533019 C = 8279.192595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.038 3.962 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.248 3.752 10 N -0.584 5.584 11 C 0.167 3.833 12 C 0.092 3.908 13 C -0.163 4.163 14 C -0.077 4.077 15 C -0.164 4.164 16 C 0.076 3.924 17 N -0.504 5.504 18 C 0.552 3.448 19 O -0.577 6.577 20 C -0.151 4.151 21 C -0.054 4.054 22 C -0.132 4.132 23 C -0.046 4.046 24 C -0.165 4.165 25 C 0.568 3.432 26 N -0.821 5.821 27 O -0.591 6.591 28 C -0.033 4.033 29 H 0.269 0.731 30 H 0.020 0.980 31 H 0.035 0.965 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.180 0.820 41 H 0.419 0.581 42 H 0.415 0.585 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -3.476 4.349 7.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.164 4.164 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.128 3.872 10 N -0.314 5.314 11 C 0.044 3.956 12 C -0.046 4.046 13 C -0.183 4.183 14 C -0.102 4.102 15 C -0.184 4.184 16 C -0.082 4.082 17 N -0.214 5.214 18 C 0.341 3.659 19 O -0.458 6.458 20 C -0.154 4.154 21 C -0.073 4.073 22 C -0.150 4.150 23 C -0.064 4.064 24 C -0.168 4.168 25 C 0.355 3.645 26 N -0.386 5.386 27 O -0.473 6.473 28 C -0.053 4.053 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.187 0.813 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.198 0.802 41 H 0.252 0.748 42 H 0.248 0.752 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.966 -4.639 4.657 7.677 hybrid contribution -0.274 1.066 -0.685 1.297 sum -4.240 -3.573 3.972 6.820 Atomic orbital electron populations 1.70026 1.07094 1.28224 1.49187 1.25500 0.95346 1.01612 0.93988 0.85630 0.78937 0.79858 0.78039 1.19750 1.20837 1.19739 1.21517 0.93336 0.90867 1.52470 0.92522 1.19347 0.87535 0.82565 0.97749 1.48046 1.44849 1.33748 1.04707 1.20178 0.95492 0.94211 0.85762 1.21648 0.96414 0.92092 0.94411 1.22219 0.96252 1.01853 0.98025 1.21997 0.97728 0.92300 0.98223 1.22520 0.99096 0.98638 0.98115 1.23249 0.92165 0.98619 0.94148 1.67522 1.27461 1.01091 1.25322 1.18663 0.82043 0.80596 0.84556 1.90691 1.33770 1.34095 1.87279 1.19823 1.04565 0.95201 0.95792 1.22545 0.92983 0.94818 0.96923 1.21432 0.98669 1.01571 0.93318 1.21823 0.94843 0.89816 0.99901 1.19763 1.06013 0.94849 0.96222 1.18218 0.76948 0.87188 0.82163 1.43432 1.60527 1.13752 1.20938 1.90795 1.59745 1.20140 1.76603 1.21043 0.93498 0.98413 0.92397 0.92124 0.96226 0.94760 0.87514 0.90617 0.84069 0.81446 0.81098 0.81287 0.82965 0.82195 0.80247 0.74777 0.75183 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.46 13.29 21.45 0.28 -45.17 16 2 C 0.04 1.80 5.46 84.66 0.46 2.26 16 3 Si 0.95 38.09 29.54 68.60 2.03 40.11 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.54 -26.06 6.85 25.60 0.18 -25.88 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.25 11.61 4.67 85.63 0.40 12.01 16 10 N -0.58 -26.27 2.44 -833.91 -2.04 -28.30 16 11 C 0.17 6.81 5.77 85.63 0.49 7.30 16 12 C 0.09 3.50 6.36 42.55 0.27 3.77 16 13 C -0.16 -5.13 9.72 22.36 0.22 -4.91 16 14 C -0.08 -1.88 10.18 22.47 0.23 -1.66 16 15 C -0.16 -3.84 10.11 22.36 0.23 -3.62 16 16 C 0.08 2.27 11.18 84.67 0.95 3.22 16 17 N -0.50 -19.70 10.27 -183.89 -1.89 -21.59 16 18 C 0.55 26.21 7.24 86.79 0.63 26.84 16 19 O -0.58 -30.20 16.57 -3.89 -0.06 -30.27 16 20 C -0.15 -6.41 4.94 -20.12 -0.10 -6.51 16 21 C -0.05 -2.09 7.52 22.58 0.17 -1.92 16 22 C -0.13 -3.82 10.02 22.19 0.22 -3.59 16 23 C -0.05 -1.08 9.54 22.58 0.22 -0.86 16 24 C -0.17 -5.14 5.87 -20.12 -0.12 -5.26 16 25 C 0.57 16.43 8.05 86.79 0.70 17.13 16 26 N -0.82 -13.07 8.82 -175.59 -1.55 -14.62 16 27 O -0.59 -22.83 17.18 -3.90 -0.07 -22.90 16 28 C -0.03 -1.34 9.26 22.79 0.21 -1.13 16 29 H 0.27 12.76 8.31 -92.71 -0.77 11.99 16 30 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 31 H 0.03 1.70 5.40 -2.39 -0.01 1.69 16 32 H 0.11 3.98 7.97 -2.39 -0.02 3.96 16 33 H 0.08 3.27 7.36 -2.39 -0.02 3.25 16 34 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 36 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.15 6.52 4.74 -2.91 -0.01 6.51 16 39 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 40 H 0.18 2.13 6.39 -2.91 -0.02 2.11 16 41 H 0.42 3.54 6.85 -92.71 -0.64 2.91 16 42 H 0.42 5.20 8.93 -92.71 -0.83 4.37 16 43 H 0.11 4.83 7.65 -2.91 -0.02 4.81 16 Total: -1.00 -75.29 371.98 1.68 -73.61 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.38 Total: 31.93 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 5.35 Total: 17.20 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -5.19 Total: -109.68 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.13 Total: -53.16 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.11 kcal Total: -75.29 1.68 -73.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171547472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.431 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds