Wall clock time and date at job start Tue Mar 31 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48500 * 109.46955 * 270.00296 * 3 2 1 5 5 H 1.48501 * 109.47052 * 29.99753 * 3 2 1 6 6 H 1.48495 * 109.47246 * 150.00098 * 3 2 1 7 7 C 1.37876 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99779 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00113 * 96.93272 * 10 9 7 12 12 C 1.50697 * 109.47106 * 270.00403 * 11 10 9 13 13 C 1.38225 * 119.62403 * 95.01565 * 12 11 10 14 14 C 1.38624 * 119.16283 * 179.74396 * 13 12 11 15 15 C 1.38672 * 118.42043 * 0.48275 * 14 13 12 16 16 C 1.38176 * 119.16302 * 359.49761 * 15 14 13 17 17 N 1.31860 * 119.61722 * 275.00222 * 12 11 10 18 18 C 1.34779 * 120.00173 * 276.93446 * 10 9 7 19 19 O 1.21354 * 120.00235 * 176.30342 * 18 10 9 20 20 C 1.49361 * 119.99680 * 356.30070 * 18 10 9 21 21 O 1.21377 * 119.99793 * 5.72352 * 20 18 10 22 22 N 1.34776 * 119.99780 * 185.73229 * 20 18 10 23 23 C 1.39718 * 119.99812 * 175.35360 * 22 20 18 24 24 C 1.38930 * 120.07579 * 214.84525 * 23 22 20 25 25 C 1.38102 * 119.92889 * 179.76580 * 24 23 22 26 26 C 1.38295 * 120.07087 * 0.48824 * 25 24 23 27 27 C 1.38299 * 120.15279 * 359.78791 * 26 25 24 28 28 C 1.38099 * 120.07462 * 359.95633 * 27 26 25 29 29 H 0.97002 * 120.00171 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47298 * 60.00484 * 9 7 2 31 31 H 1.09002 * 109.47427 * 300.00036 * 9 7 2 32 32 H 1.08998 * 109.47153 * 149.99913 * 11 10 9 33 33 H 1.09002 * 109.46768 * 29.99549 * 11 10 9 34 34 H 1.08004 * 120.41385 * 359.95907 * 13 12 11 35 35 H 1.08005 * 120.78942 * 180.23187 * 14 13 12 36 36 H 1.08002 * 120.41888 * 179.78090 * 15 14 13 37 37 H 1.08005 * 119.61639 * 180.25683 * 16 15 14 38 38 H 0.96996 * 120.00044 * 355.34448 * 22 20 18 39 39 H 1.08011 * 120.03725 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.96569 * 180.25414 * 25 24 23 41 41 H 1.07997 * 119.92213 * 179.76263 * 26 25 24 42 42 H 1.07998 * 119.96157 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.03014 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.5626 -4.2689 1.2589 12 6 3.7579 -3.5774 1.8623 13 6 3.5691 -2.5899 2.8109 14 6 4.6756 -1.9638 3.3636 15 6 5.9359 -2.3489 2.9321 16 6 6.0467 -3.3443 1.9802 17 7 4.9719 -3.9215 1.4794 18 6 2.7481 -4.0333 -1.1592 19 8 3.5867 -4.9105 -1.1521 20 6 2.3199 -3.4199 -2.4520 21 8 1.5598 -2.4735 -2.4523 22 7 2.7773 -3.9173 -3.6180 23 6 2.3025 -3.4076 -4.8292 24 6 2.1420 -4.2485 -5.9234 25 6 1.6679 -3.7423 -7.1176 26 6 1.3625 -2.3981 -7.2280 27 6 1.5265 -1.5570 -6.1424 28 6 1.9952 -2.0576 -4.9437 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8058 -5.3141 1.0675 33 1 1.7224 -4.2121 1.9510 34 1 2.5723 -2.3122 3.1201 35 1 4.5586 -1.1915 4.1094 36 1 6.8200 -1.8800 3.3384 37 1 7.0249 -3.6529 1.6419 38 1 3.4362 -4.6291 -3.6165 39 1 2.3846 -5.2976 -5.8392 40 1 1.5390 -4.3963 -7.9674 41 1 0.9955 -2.0041 -8.1642 42 1 1.2874 -0.5076 -6.2322 43 1 2.1226 -1.4002 -4.0964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171547599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:34 Heat of formation + Delta-G solvation = 22.697440 kcal Electronic energy + Delta-G solvation = -29259.540570 eV Core-core repulsion = 25270.923939 eV Total energy + Delta-G solvation = -3988.616631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57194 -39.80484 -38.84091 -37.47319 -35.61927 -34.17514 -32.70381 -32.02360 -31.26630 -30.71909 -29.46546 -27.66956 -26.59189 -24.21493 -23.18604 -22.75728 -22.61715 -21.97834 -20.96198 -19.29154 -17.62680 -16.90702 -16.72774 -16.44398 -16.21155 -15.84076 -15.56796 -15.30176 -15.02616 -14.88982 -14.37586 -14.12398 -13.86525 -13.69273 -13.36508 -13.17433 -12.96341 -12.82108 -12.65933 -12.36265 -12.28269 -11.85372 -11.61683 -11.39204 -11.32119 -11.08514 -10.97785 -10.80577 -10.48964 -10.08877 -9.95126 -9.72446 -9.47873 -9.03166 -8.86950 -8.71978 -8.59956 -8.25598 -7.97506 -7.79197 -6.04783 -4.06193 1.38752 1.43682 1.58428 1.69438 2.22338 2.91940 3.27316 3.34184 3.37128 3.79522 4.01595 4.07448 4.35739 4.45787 4.68062 4.97495 5.05969 5.10321 5.14729 5.15578 5.31100 5.31529 5.40141 5.51270 5.56981 5.72663 5.75079 5.81856 5.85632 6.07029 6.12860 6.18354 6.48056 6.49526 6.54167 6.55326 6.60119 6.67761 6.75843 7.06564 7.21129 7.35081 7.42386 7.57484 7.84838 8.07188 8.18874 8.36700 8.43532 8.67674 8.95650 9.56322 11.03904 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.004328 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.983964 B = 6467.294539 C = 8069.796032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.071 3.929 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.050 0.950 9 C 0.221 3.779 10 N -0.559 5.559 11 C 0.168 3.832 12 C 0.121 3.879 13 C -0.132 4.132 14 C -0.082 4.082 15 C -0.179 4.179 16 C 0.087 3.913 17 N -0.460 5.460 18 C 0.510 3.490 19 O -0.536 6.536 20 C 0.492 3.508 21 O -0.436 6.436 22 N -0.663 5.663 23 C 0.155 3.845 24 C -0.150 4.150 25 C -0.106 4.106 26 C -0.143 4.143 27 C -0.101 4.101 28 C -0.120 4.120 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.416 0.584 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 -6.900 -3.408 9.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.131 4.131 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.103 3.897 10 N -0.290 5.290 11 C 0.044 3.956 12 C -0.018 4.018 13 C -0.153 4.153 14 C -0.109 4.109 15 C -0.199 4.199 16 C -0.070 4.070 17 N -0.169 5.169 18 C 0.292 3.708 19 O -0.415 6.415 20 C 0.274 3.726 21 O -0.304 6.304 22 N -0.311 5.311 23 C 0.061 3.939 24 C -0.170 4.170 25 C -0.125 4.125 26 C -0.162 4.162 27 C -0.119 4.119 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.253 0.747 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.056 -7.193 -3.905 9.620 hybrid contribution 0.793 1.694 0.671 1.987 sum 5.848 -5.499 -3.233 8.654 Atomic orbital electron populations 1.69909 1.05765 1.26702 1.50385 1.24754 0.94658 0.98554 0.95149 0.86689 0.79807 0.83860 0.78233 1.20666 1.21191 1.20155 1.21142 0.92627 0.90196 1.50806 0.93137 1.20152 0.87541 0.81922 1.00076 1.48194 1.42947 1.34218 1.03622 1.20279 0.93080 0.96642 0.85593 1.21532 0.93060 0.94426 0.92823 1.21996 1.00205 0.95896 0.97160 1.21510 0.92529 0.98136 0.98683 1.22052 0.98160 0.99662 1.00043 1.22643 0.97312 0.93382 0.93678 1.67546 0.98440 1.27200 1.23730 1.19699 0.82624 0.83359 0.85135 1.90706 1.31769 1.31786 1.87209 1.20482 0.82320 0.84775 0.85069 1.90924 1.30593 1.23064 1.85798 1.43241 1.44139 1.40266 1.03444 1.17784 0.98311 0.92533 0.85319 1.20898 1.03845 0.99033 0.93251 1.20856 0.99238 0.95488 0.96881 1.21093 1.02384 0.93926 0.98766 1.21086 0.98457 0.99943 0.92447 1.21506 0.99614 0.94022 0.98831 0.92891 0.90595 0.95079 0.88969 0.88732 0.84490 0.85300 0.85551 0.83493 0.74711 0.85854 0.86040 0.86354 0.85859 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 13.29 55.43 0.74 -24.33 16 2 C 0.07 1.93 5.46 -17.82 -0.10 1.84 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.42 8.31 -34.44 -0.29 -13.71 16 8 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.22 5.31 4.81 -5.19 -0.02 5.29 16 10 N -0.56 -11.71 2.46 -176.97 -0.44 -12.14 16 11 C 0.17 3.01 5.73 -5.19 -0.03 2.98 16 12 C 0.12 2.22 6.36 -82.59 -0.53 1.70 16 13 C -0.13 -2.25 9.72 -39.44 -0.38 -2.64 16 14 C -0.08 -1.25 10.18 -39.28 -0.40 -1.65 16 15 C -0.18 -2.55 10.11 -39.44 -0.40 -2.95 16 16 C 0.09 1.38 11.18 -17.55 -0.20 1.19 16 17 N -0.46 -8.66 10.27 -9.48 -0.10 -8.76 16 18 C 0.51 10.70 7.66 -11.63 -0.09 10.61 16 19 O -0.54 -11.32 16.10 5.49 0.09 -11.24 16 20 C 0.49 10.07 7.61 -11.63 -0.09 9.98 16 21 O -0.44 -10.22 9.80 5.47 0.05 -10.17 16 22 N -0.66 -11.16 5.32 -10.30 -0.05 -11.21 16 23 C 0.16 2.51 6.30 -83.75 -0.53 1.98 16 24 C -0.15 -1.97 9.97 -39.38 -0.39 -2.36 16 25 C -0.11 -1.25 10.04 -39.61 -0.40 -1.65 16 26 C -0.14 -1.77 10.04 -39.54 -0.40 -2.16 16 27 C -0.10 -1.47 10.04 -39.61 -0.40 -1.86 16 28 C -0.12 -2.08 8.70 -39.38 -0.34 -2.42 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.08 2.00 5.42 -51.93 -0.28 1.72 16 31 H 0.03 0.76 7.82 -51.93 -0.41 0.35 16 32 H 0.09 1.60 7.48 -51.93 -0.39 1.21 16 33 H 0.09 1.45 7.75 -51.93 -0.40 1.05 16 34 H 0.14 2.23 8.06 -52.48 -0.42 1.81 16 35 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.42 6.10 8.30 -40.82 -0.34 5.76 16 39 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.15 2.94 6.22 -52.49 -0.33 2.61 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -32.27 373.88 -9.14 -41.41 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.07 Total: 10.23 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -4.97 Total: 4.15 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.15 Total: -56.44 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: 0.14 Total: -21.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.27 -9.14 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171547599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.112 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds