Wall clock time and date at job start Tue Mar 31 2020 22:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48500 * 109.46955 * 270.00296 * 3 2 1 5 5 H 1.48501 * 109.47052 * 29.99753 * 3 2 1 6 6 H 1.48495 * 109.47246 * 150.00098 * 3 2 1 7 7 C 1.37876 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99779 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00113 * 96.93272 * 10 9 7 12 12 C 1.50697 * 109.47106 * 270.00403 * 11 10 9 13 13 C 1.38225 * 119.62403 * 95.01565 * 12 11 10 14 14 C 1.38624 * 119.16283 * 179.74396 * 13 12 11 15 15 C 1.38672 * 118.42043 * 0.48275 * 14 13 12 16 16 C 1.38176 * 119.16302 * 359.49761 * 15 14 13 17 17 N 1.31860 * 119.61722 * 275.00222 * 12 11 10 18 18 C 1.34779 * 120.00173 * 276.93446 * 10 9 7 19 19 O 1.21354 * 120.00235 * 176.30342 * 18 10 9 20 20 C 1.49361 * 119.99680 * 356.30070 * 18 10 9 21 21 O 1.21377 * 119.99793 * 5.72352 * 20 18 10 22 22 N 1.34776 * 119.99780 * 185.73229 * 20 18 10 23 23 C 1.39718 * 119.99812 * 175.35360 * 22 20 18 24 24 C 1.38930 * 120.07579 * 214.84525 * 23 22 20 25 25 C 1.38102 * 119.92889 * 179.76580 * 24 23 22 26 26 C 1.38295 * 120.07087 * 0.48824 * 25 24 23 27 27 C 1.38299 * 120.15279 * 359.78791 * 26 25 24 28 28 C 1.38099 * 120.07462 * 359.95633 * 27 26 25 29 29 H 0.97002 * 120.00171 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47298 * 60.00484 * 9 7 2 31 31 H 1.09002 * 109.47427 * 300.00036 * 9 7 2 32 32 H 1.08998 * 109.47153 * 149.99913 * 11 10 9 33 33 H 1.09002 * 109.46768 * 29.99549 * 11 10 9 34 34 H 1.08004 * 120.41385 * 359.95907 * 13 12 11 35 35 H 1.08005 * 120.78942 * 180.23187 * 14 13 12 36 36 H 1.08002 * 120.41888 * 179.78090 * 15 14 13 37 37 H 1.08005 * 119.61639 * 180.25683 * 16 15 14 38 38 H 0.96996 * 120.00044 * 355.34448 * 22 20 18 39 39 H 1.08011 * 120.03725 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.96569 * 180.25414 * 25 24 23 41 41 H 1.07997 * 119.92213 * 179.76263 * 26 25 24 42 42 H 1.07998 * 119.96157 * 179.97438 * 27 26 25 43 43 H 1.08000 * 120.03014 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.5626 -4.2689 1.2589 12 6 3.7579 -3.5774 1.8623 13 6 3.5691 -2.5899 2.8109 14 6 4.6756 -1.9638 3.3636 15 6 5.9359 -2.3489 2.9321 16 6 6.0467 -3.3443 1.9802 17 7 4.9719 -3.9215 1.4794 18 6 2.7481 -4.0333 -1.1592 19 8 3.5867 -4.9105 -1.1521 20 6 2.3199 -3.4199 -2.4520 21 8 1.5598 -2.4735 -2.4523 22 7 2.7773 -3.9173 -3.6180 23 6 2.3025 -3.4076 -4.8292 24 6 2.1420 -4.2485 -5.9234 25 6 1.6679 -3.7423 -7.1176 26 6 1.3625 -2.3981 -7.2280 27 6 1.5265 -1.5570 -6.1424 28 6 1.9952 -2.0576 -4.9437 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8058 -5.3141 1.0675 33 1 1.7224 -4.2121 1.9510 34 1 2.5723 -2.3122 3.1201 35 1 4.5586 -1.1915 4.1094 36 1 6.8200 -1.8800 3.3384 37 1 7.0249 -3.6529 1.6419 38 1 3.4362 -4.6291 -3.6165 39 1 2.3846 -5.2976 -5.8392 40 1 1.5390 -4.3963 -7.9674 41 1 0.9955 -2.0041 -8.1642 42 1 1.2874 -0.5076 -6.2322 43 1 2.1226 -1.4002 -4.0964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171547599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:33 Heat of formation + Delta-G solvation = 2.973808 kcal Electronic energy + Delta-G solvation = -29260.395851 eV Core-core repulsion = 25270.923939 eV Total energy + Delta-G solvation = -3989.471912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08901 -41.08510 -40.18776 -38.94919 -37.25060 -35.61340 -34.64940 -33.32654 -32.67065 -31.81654 -30.69366 -29.46607 -28.16106 -25.76975 -24.75552 -24.24026 -23.80492 -23.22599 -22.27038 -20.80152 -19.08427 -18.64890 -18.34590 -17.84700 -17.59943 -17.08636 -16.92998 -16.82672 -16.61307 -16.31945 -16.05039 -15.49854 -15.28664 -14.93442 -14.75526 -14.42948 -14.35667 -14.15075 -14.11343 -13.92765 -13.70323 -13.57517 -13.15676 -12.87387 -12.81189 -12.61883 -12.45525 -12.33906 -12.15156 -11.83561 -11.73244 -11.34651 -10.73640 -10.65065 -10.35861 -10.20628 -9.90273 -9.82498 -9.56600 -9.13522 -8.13810 -6.19858 0.10821 0.18996 0.45977 0.47981 0.73811 1.32232 1.35636 1.42454 1.46936 2.22311 2.39323 2.59841 2.90265 3.04984 3.20138 3.40421 3.44646 3.86309 4.02190 4.05025 4.09588 4.22736 4.30446 4.32356 4.45775 4.53612 4.55256 4.57257 4.63691 4.78337 4.82983 4.91635 5.12150 5.25893 5.28084 5.33633 5.36201 5.42708 5.51895 5.60966 5.66983 5.76932 5.86156 6.08902 6.11830 6.15746 6.32059 6.79597 6.84521 7.09862 7.16433 7.44810 8.94295 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.004328 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.983964 B = 6467.294539 C = 8069.796032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.028 3.972 3 Si 0.938 3.062 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.031 0.969 9 C 0.241 3.759 10 N -0.560 5.560 11 C 0.164 3.836 12 C 0.097 3.903 13 C -0.148 4.148 14 C -0.087 4.087 15 C -0.168 4.168 16 C 0.074 3.926 17 N -0.493 5.493 18 C 0.506 3.494 19 O -0.539 6.539 20 C 0.489 3.511 21 O -0.475 6.475 22 N -0.646 5.646 23 C 0.126 3.874 24 C -0.142 4.142 25 C -0.097 4.097 26 C -0.132 4.132 27 C -0.113 4.113 28 C -0.150 4.150 29 H 0.262 0.738 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.426 0.574 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.130 0.870 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -7.236 -4.593 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.214 1.214 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.121 3.879 10 N -0.291 5.291 11 C 0.041 3.959 12 C -0.041 4.041 13 C -0.169 4.169 14 C -0.113 4.113 15 C -0.188 4.188 16 C -0.084 4.084 17 N -0.203 5.203 18 C 0.288 3.712 19 O -0.418 6.418 20 C 0.270 3.730 21 O -0.346 6.346 22 N -0.294 5.294 23 C 0.033 3.967 24 C -0.162 4.162 25 C -0.115 4.115 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.190 0.810 38 H 0.264 0.736 39 H 0.169 0.831 40 H 0.181 0.819 41 H 0.171 0.829 42 H 0.148 0.852 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.315 -7.564 -5.099 11.095 hybrid contribution 0.488 1.739 0.937 2.035 sum 6.803 -5.824 -4.162 9.876 Atomic orbital electron populations 1.69995 1.06805 1.27319 1.51579 1.25360 0.95343 1.01240 0.95189 0.85878 0.79024 0.80911 0.77765 1.21397 1.20011 1.19670 1.21131 0.91548 0.91358 1.49835 0.95059 1.19687 0.87534 0.82148 0.98556 1.48118 1.42487 1.33607 1.04882 1.20485 0.94212 0.96453 0.84708 1.21511 0.93060 0.95546 0.93953 1.22122 1.01105 0.96152 0.97513 1.21927 0.92300 0.98267 0.98834 1.22465 0.99228 0.98439 0.98656 1.23194 0.97578 0.93670 0.93935 1.67499 0.99216 1.28618 1.24977 1.19877 0.82523 0.83352 0.85461 1.90684 1.31837 1.31975 1.87351 1.20512 0.82105 0.84471 0.85867 1.90917 1.32598 1.24767 1.86333 1.43076 1.43617 1.39757 1.02987 1.18025 1.00233 0.92707 0.85771 1.21243 1.02573 0.99922 0.92455 1.21381 0.97014 0.95774 0.97363 1.21513 1.00523 0.93993 0.99011 1.21264 0.98643 1.00974 0.92323 1.21322 1.02345 0.94485 0.98862 0.92859 0.92910 0.95547 0.88715 0.86790 0.84587 0.82525 0.81658 0.80991 0.73559 0.83150 0.81858 0.82872 0.85181 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 13.29 21.45 0.28 -52.81 16 2 C 0.03 1.57 5.46 84.65 0.46 2.03 16 3 Si 0.94 44.69 29.54 68.60 2.03 46.72 16 4 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.50 -27.28 8.31 25.60 0.21 -27.07 16 8 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 9 C 0.24 12.07 4.81 85.63 0.41 12.48 16 10 N -0.56 -24.41 2.46 -832.18 -2.05 -26.46 16 11 C 0.16 6.05 5.73 85.63 0.49 6.54 16 12 C 0.10 3.64 6.36 42.55 0.27 3.91 16 13 C -0.15 -5.05 9.72 22.36 0.22 -4.83 16 14 C -0.09 -2.49 10.18 22.47 0.23 -2.26 16 15 C -0.17 -4.37 10.11 22.36 0.23 -4.14 16 16 C 0.07 2.23 11.18 84.67 0.95 3.18 16 17 N -0.49 -18.58 10.27 -183.89 -1.89 -20.47 16 18 C 0.51 22.04 7.66 87.24 0.67 22.70 16 19 O -0.54 -23.26 16.10 -3.26 -0.05 -23.32 16 20 C 0.49 21.05 7.61 87.24 0.66 21.71 16 21 O -0.48 -23.82 9.80 -3.33 -0.03 -23.85 16 22 N -0.65 -22.38 5.32 -304.84 -1.62 -24.00 16 23 C 0.13 4.12 6.30 38.22 0.24 4.36 16 24 C -0.14 -3.40 9.97 22.40 0.22 -3.18 16 25 C -0.10 -1.92 10.04 22.25 0.22 -1.70 16 26 C -0.13 -2.87 10.04 22.30 0.22 -2.65 16 27 C -0.11 -3.29 10.04 22.25 0.22 -3.06 16 28 C -0.15 -5.45 8.70 22.40 0.19 -5.26 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.05 2.96 5.42 -2.39 -0.01 2.94 16 31 H 0.03 1.34 7.82 -2.39 -0.02 1.32 16 32 H 0.09 3.38 7.48 -2.39 -0.02 3.36 16 33 H 0.11 3.61 7.75 -2.39 -0.02 3.59 16 34 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.17 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.43 12.58 8.30 -92.71 -0.77 11.81 16 39 H 0.15 2.75 8.06 -2.90 -0.02 2.72 16 40 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.10 4.57 6.22 -2.91 -0.02 4.55 16 Total: -1.00 -73.17 373.88 3.08 -70.09 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.28 Total: 31.35 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 6.13 Total: 22.76 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -5.27 Total: -123.74 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.09 Total: -47.17 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.17 3.08 -70.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171547599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.065 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds