Wall clock time and date at job start Tue Mar 31 2020 22:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48501 * 109.47014 * 269.99553 * 3 2 1 5 5 H 1.48502 * 109.47331 * 29.99659 * 3 2 1 6 6 H 1.48505 * 109.46996 * 149.99904 * 3 2 1 7 7 C 1.37874 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99817 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46867 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99736 * 269.99564 * 10 9 7 12 12 C 1.50697 * 109.47582 * 270.00315 * 11 10 9 13 13 C 1.38684 * 120.41589 * 269.72440 * 12 11 10 14 14 C 1.38628 * 118.41323 * 179.78014 * 13 12 11 15 15 C 1.38224 * 119.16359 * 0.51162 * 14 13 12 16 16 N 1.31848 * 120.76503 * 359.72690 * 15 14 13 17 17 C 1.31883 * 121.72740 * 0.02562 * 16 15 14 18 18 C 1.34777 * 120.00368 * 90.00053 * 10 9 7 19 19 O 1.21690 * 120.00385 * 179.97438 * 18 10 9 20 20 C 1.46432 * 119.99767 * 359.97438 * 18 10 9 21 21 C 1.34799 * 119.99835 * 179.97438 * 20 18 10 22 22 C 1.47225 * 119.99759 * 179.97438 * 21 20 18 23 23 C 1.39847 * 120.55870 * 0.22822 * 22 21 20 24 24 N 1.31620 * 120.64854 * 180.25797 * 23 22 21 25 25 C 1.31925 * 121.96649 * 359.74712 * 24 23 22 26 26 C 1.38858 * 121.05568 * 0.02562 * 25 24 23 27 27 O 1.35923 * 120.38821 * 180.02562 * 26 25 24 28 28 C 1.38813 * 119.22393 * 359.97438 * 26 25 24 29 29 H 0.97002 * 119.99778 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.47475 * 60.00017 * 9 7 2 31 31 H 1.09005 * 109.47171 * 299.99650 * 9 7 2 32 32 H 1.09004 * 109.47146 * 30.00726 * 11 10 9 33 33 H 1.09007 * 109.46883 * 150.00124 * 11 10 9 34 34 H 1.07994 * 120.79210 * 0.02562 * 13 12 11 35 35 H 1.08003 * 120.41203 * 180.21805 * 14 13 12 36 36 H 1.08001 * 119.61660 * 179.74763 * 15 14 13 37 37 H 1.07999 * 119.62009 * 179.97438 * 17 16 15 38 38 H 1.07999 * 119.99835 * 359.97438 * 20 18 10 39 39 H 1.07999 * 120.00332 * 0.02562 * 21 20 18 40 40 H 1.08001 * 119.68007 * 0.02850 * 23 22 21 41 41 H 1.08001 * 119.47238 * 179.97438 * 25 24 23 42 42 H 0.96701 * 114.00168 * 269.98340 * 27 26 25 43 43 H 1.08002 * 120.88736 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6790 -4.1694 -1.2682 12 6 1.7623 -5.2836 -1.7033 13 6 2.0115 -6.5907 -1.3128 14 6 1.1388 -7.5825 -1.7329 15 6 0.0631 -7.2395 -2.5303 16 7 -0.1401 -5.9864 -2.8864 17 6 0.6664 -5.0165 -2.5014 18 6 2.6411 -4.1249 1.1677 19 8 3.4315 -5.0501 1.1677 20 6 2.1657 -3.5681 2.4358 21 6 2.6033 -4.0807 3.6032 22 6 2.1258 -3.5205 4.8782 23 6 1.2147 -2.4597 4.8919 24 7 0.7905 -1.9542 6.0307 25 6 1.1955 -2.4213 7.1961 26 6 2.0956 -3.4759 7.2715 27 8 2.5035 -3.9467 8.4796 28 6 2.5733 -4.0444 6.0987 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 2.6868 -3.3877 -2.0279 33 1 3.6885 -4.5594 -1.1379 34 1 2.8629 -6.8297 -0.6928 35 1 1.3002 -8.6108 -1.4448 36 1 -0.6191 -8.0069 -2.8652 37 1 0.4680 -4.0018 -2.8135 38 1 1.4645 -2.7467 2.4358 39 1 3.3049 -4.9019 3.6032 40 1 0.8583 -2.0488 3.9588 41 1 0.8216 -1.9757 8.1061 42 1 3.2937 -3.5098 8.8257 43 1 3.2744 -4.8654 6.1260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179457491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:52 Heat of formation + Delta-G solvation = 13.053598 kcal Electronic energy + Delta-G solvation = -27967.893022 eV Core-core repulsion = 23978.858203 eV Total energy + Delta-G solvation = -3989.034819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45643 -40.09249 -39.01918 -37.46336 -35.43210 -34.36159 -33.10334 -32.18432 -31.53366 -31.12345 -29.44971 -27.63535 -26.36600 -24.30382 -23.63875 -23.45246 -22.87677 -22.14051 -20.69085 -18.55038 -18.09972 -17.21127 -16.97278 -16.92693 -16.47865 -16.37607 -15.91649 -15.48817 -15.26217 -15.13302 -14.55421 -14.11014 -13.90593 -13.64768 -13.53605 -13.35685 -13.10023 -13.01005 -12.76153 -12.51035 -12.44954 -12.03911 -11.85618 -11.63822 -11.33814 -11.17523 -11.03516 -10.75675 -10.71751 -10.26564 -9.89683 -9.65256 -9.51798 -9.38937 -9.32286 -9.25949 -8.79826 -8.62244 -8.34795 -7.87090 -6.25593 -4.34257 0.47344 1.03010 1.27369 1.49906 2.08764 3.19299 3.27771 3.29835 3.55520 3.66637 3.84294 3.98031 4.16701 4.28280 4.45401 4.64880 4.70644 4.75792 4.82879 5.00135 5.07750 5.13117 5.13911 5.21166 5.27057 5.35584 5.54614 5.63767 5.68442 5.85572 5.90411 5.97117 6.02546 6.11639 6.32491 6.39200 6.48397 6.52389 6.57732 6.70417 6.90988 7.06516 7.29656 7.36267 7.68258 7.88674 7.94405 8.13100 8.16852 8.67542 8.82628 9.34578 10.80819 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007580 B = 0.003830 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.014906 B = 7309.608062 C =10060.444966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.235 3.765 10 N -0.581 5.581 11 C 0.160 3.840 12 C -0.146 4.146 13 C -0.056 4.056 14 C -0.182 4.182 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.115 3.885 18 C 0.546 3.454 19 O -0.574 6.574 20 C -0.154 4.154 21 C -0.066 4.066 22 C -0.087 4.087 23 C 0.108 3.892 24 N -0.462 5.462 25 C 0.074 3.926 26 C 0.050 3.950 27 O -0.493 6.493 28 C -0.092 4.092 29 H 0.267 0.733 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.171 0.829 41 H 0.159 0.841 42 H 0.391 0.609 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.171 -9.278 6.853 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.116 3.884 10 N -0.309 5.309 11 C 0.036 3.964 12 C -0.149 4.149 13 C -0.082 4.082 14 C -0.202 4.202 15 C -0.067 4.067 16 N -0.197 5.197 17 C -0.042 4.042 18 C 0.336 3.664 19 O -0.457 6.457 20 C -0.174 4.174 21 C -0.087 4.087 22 C -0.089 4.089 23 C -0.050 4.050 24 N -0.171 5.171 25 C -0.083 4.083 26 C 0.004 3.996 27 O -0.302 6.302 28 C -0.118 4.118 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.188 0.812 41 H 0.176 0.824 42 H 0.247 0.753 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.595 -9.068 6.239 11.308 hybrid contribution 2.053 0.439 0.666 2.203 sum 4.648 -8.628 6.905 11.989 Atomic orbital electron populations 1.69913 1.05960 1.27548 1.49047 1.24919 0.94826 0.99247 0.94546 0.86534 0.79893 0.82984 0.78340 1.20459 1.20966 1.19778 1.21460 0.93647 0.90234 1.52768 0.91944 1.19550 0.87474 0.82431 0.98960 1.48160 1.44988 1.34058 1.03718 1.20156 0.95930 0.93405 0.86859 1.21417 0.98702 0.95938 0.98883 1.21667 0.98614 0.92177 0.95773 1.22107 0.96966 1.00435 1.00656 1.22700 0.95746 0.93563 0.94691 1.67705 1.28915 1.00807 1.22316 1.22818 0.89567 0.98598 0.93210 1.18197 0.80985 0.82416 0.84754 1.90683 1.36367 1.30487 1.88157 1.23416 1.01111 1.00783 0.92093 1.22024 0.98281 0.98655 0.89695 1.20028 0.98154 0.97205 0.93530 1.23416 0.92479 0.92071 0.96993 1.67711 1.23377 1.28025 0.97980 1.23233 0.95299 0.93037 0.96761 1.19397 0.98923 0.95897 0.85426 1.84846 1.49560 1.63494 1.32297 1.22100 0.99070 0.99600 0.90984 0.92322 0.94290 0.94276 0.88852 0.89672 0.84452 0.85260 0.83280 0.82460 0.83774 0.84808 0.81163 0.82416 0.75330 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.32 13.29 55.43 0.74 -22.58 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.16 9.39 -34.44 -0.32 -13.49 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.24 5.17 4.87 -5.19 -0.03 5.14 16 10 N -0.58 -11.27 2.44 -178.07 -0.43 -11.71 16 11 C 0.16 2.72 5.56 -5.20 -0.03 2.69 16 12 C -0.15 -2.34 5.48 -104.48 -0.57 -2.91 16 13 C -0.06 -0.83 9.86 -39.27 -0.39 -1.21 16 14 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 15 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 16 N -0.49 -7.87 10.36 -13.26 -0.14 -8.01 16 17 C 0.12 1.87 10.86 -17.55 -0.19 1.68 16 18 C 0.55 10.57 7.60 -12.96 -0.10 10.47 16 19 O -0.57 -11.57 15.46 5.20 0.08 -11.49 16 20 C -0.15 -2.69 8.62 -37.50 -0.32 -3.01 16 21 C -0.07 -0.99 9.48 -37.15 -0.35 -1.34 16 22 C -0.09 -1.21 5.88 -104.93 -0.62 -1.83 16 23 C 0.11 1.63 10.59 -17.04 -0.18 1.45 16 24 N -0.46 -6.92 10.34 -12.71 -0.13 -7.05 16 25 C 0.07 0.91 11.13 -17.28 -0.19 0.72 16 26 C 0.05 0.57 6.73 -39.14 -0.26 0.31 16 27 O -0.49 -4.54 13.52 -19.50 -0.26 -4.81 16 28 C -0.09 -1.09 9.89 -38.65 -0.38 -1.48 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.04 0.89 6.10 -51.93 -0.32 0.58 16 32 H 0.09 1.52 8.02 -51.93 -0.42 1.11 16 33 H 0.08 1.41 7.37 -51.92 -0.38 1.03 16 34 H 0.14 2.03 7.70 -52.49 -0.40 1.63 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.14 2.61 4.25 -52.49 -0.22 2.39 16 39 H 0.13 1.93 7.52 -52.49 -0.39 1.54 16 40 H 0.17 2.64 6.18 -52.49 -0.32 2.32 16 41 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.39 1.65 9.06 45.56 0.41 2.07 16 43 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -30.34 379.65 -8.21 -38.54 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.13 Total: 9.50 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -4.63 Total: -2.92 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.03 Total: -49.35 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.18 Total: -16.29 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.34 -8.21 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179457491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.597 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds