Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48499 * 109.46969 * 269.99384 * 3 2 1 5 5 H 1.48495 * 109.47458 * 29.99630 * 3 2 1 6 6 H 1.48504 * 109.47033 * 149.99915 * 3 2 1 7 7 C 1.37879 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99185 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00395 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21696 * 120.00639 * 180.02562 * 18 10 9 20 20 C 1.46435 * 119.99784 * 359.97438 * 18 10 9 21 21 C 1.34800 * 120.00168 * 179.97438 * 20 18 10 22 22 C 1.47220 * 120.00215 * 180.02562 * 21 20 18 23 23 C 1.39853 * 120.55618 * 359.97438 * 22 21 20 24 24 N 1.31614 * 120.64567 * 179.97438 * 23 22 21 25 25 C 1.31920 * 121.97218 * 0.02562 * 24 23 22 26 26 C 1.38861 * 121.05593 * 359.97438 * 25 24 23 27 27 O 1.35920 * 120.39279 * 179.97438 * 26 25 24 28 28 C 1.38813 * 119.21927 * 359.70491 * 26 25 24 29 29 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 31 31 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 32 32 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 33 33 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 34 34 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 35 35 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 36 36 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 37 37 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 38 38 H 1.07997 * 119.99832 * 0.02562 * 20 18 10 39 39 H 1.07997 * 120.00000 * 0.02562 * 21 20 18 40 40 H 1.07996 * 119.67517 * 0.02562 * 23 22 21 41 41 H 1.07999 * 119.47767 * 180.02562 * 25 24 23 42 42 H 0.96691 * 113.99891 * 89.99536 * 27 26 25 43 43 H 1.08004 * 120.89176 * 180.29391 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 1.2693 12 6 3.9222 -3.4370 1.7043 13 6 3.8176 -2.3770 2.5852 14 6 4.9678 -1.7129 2.9824 15 6 6.1846 -2.1353 2.4687 16 6 6.2112 -3.2033 1.5923 17 7 5.0971 -3.8147 1.2398 18 6 2.6409 -4.1249 -1.1666 19 8 3.4313 -5.0502 -1.1667 20 6 2.1647 -3.5688 -2.4348 21 6 2.6030 -4.0808 -3.6022 22 6 2.1246 -3.5214 -4.8772 23 6 1.2150 -2.4591 -4.8908 24 7 0.7866 -1.9573 -6.0295 25 6 1.1890 -2.4264 -7.1950 26 6 2.0908 -3.4796 -7.2705 27 8 2.4959 -3.9528 -8.4786 28 6 2.5781 -4.0399 -6.0977 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.9073 -5.2273 1.1390 33 1 1.9057 -4.0556 2.0289 34 1 2.8524 -2.0720 2.9615 35 1 4.9169 -0.8836 3.6725 36 1 7.1004 -1.6388 2.7536 37 1 7.1553 -3.5410 1.1910 38 1 1.4629 -2.7480 -2.4347 39 1 3.3051 -4.9014 -3.6022 40 1 0.8614 -2.0460 -3.9577 41 1 0.8116 -1.9839 -8.1050 42 1 3.2840 -3.5151 -8.8282 43 1 3.2841 -4.8568 -6.1249 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179480548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = -2.335607 kcal Electronic energy + Delta-G solvation = -28330.682237 eV Core-core repulsion = 24340.980092 eV Total energy + Delta-G solvation = -3989.702145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49358 -41.22750 -40.29589 -38.31283 -36.85743 -35.56467 -34.62409 -33.32870 -32.84859 -32.19145 -30.54350 -29.41326 -27.81964 -25.55726 -24.82513 -24.61354 -24.24055 -23.23515 -21.89259 -19.81788 -19.14108 -18.65784 -18.31809 -17.96651 -17.79662 -17.44119 -17.09037 -16.71688 -16.49116 -16.22808 -16.18417 -15.50851 -15.12083 -14.86140 -14.58654 -14.35105 -14.27720 -14.22992 -14.07402 -13.89869 -13.61324 -13.51882 -13.11681 -13.04298 -12.76154 -12.63521 -12.48187 -12.25001 -11.99534 -11.88163 -11.69995 -10.90151 -10.69364 -10.56048 -10.48444 -10.35317 -10.30912 -9.85438 -9.57789 -9.32481 -8.17074 -6.27850 -0.64815 0.05429 0.23740 0.48657 0.90140 1.37181 1.41925 1.48615 2.22203 2.41565 2.43718 2.73712 2.98307 3.09199 3.14629 3.42935 3.48188 3.57058 3.78850 3.81904 3.89377 4.02312 4.06539 4.16900 4.29461 4.33583 4.39618 4.52810 4.59665 4.64199 4.82932 4.86854 4.90268 4.94492 4.95829 5.21191 5.23316 5.31535 5.36081 5.37190 5.52739 5.69844 5.84549 5.89290 6.09849 6.55970 6.68182 6.84300 6.87935 7.20852 7.32202 7.44991 8.88336 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010159 B = 0.003634 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.474971 B = 7704.026749 C = 9240.776024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.032 3.968 3 Si 0.938 3.062 4 H -0.283 1.283 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.042 0.958 9 C 0.249 3.751 10 N -0.587 5.587 11 C 0.168 3.832 12 C 0.102 3.898 13 C -0.146 4.146 14 C -0.089 4.089 15 C -0.170 4.170 16 C 0.073 3.927 17 N -0.497 5.497 18 C 0.541 3.459 19 O -0.576 6.576 20 C -0.188 4.188 21 C -0.031 4.031 22 C -0.101 4.101 23 C 0.093 3.907 24 N -0.489 5.489 25 C 0.075 3.925 26 C 0.066 3.934 27 O -0.492 6.492 28 C -0.084 4.084 29 H 0.266 0.734 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.186 0.814 42 H 0.416 0.584 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -3.963 -5.749 10.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.168 4.168 3 Si 0.764 3.236 4 H -0.209 1.209 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.060 0.940 9 C 0.129 3.871 10 N -0.316 5.316 11 C 0.044 3.956 12 C -0.036 4.036 13 C -0.167 4.167 14 C -0.115 4.115 15 C -0.190 4.190 16 C -0.085 4.085 17 N -0.207 5.207 18 C 0.332 3.668 19 O -0.459 6.459 20 C -0.208 4.208 21 C -0.052 4.052 22 C -0.103 4.103 23 C -0.064 4.064 24 N -0.198 5.198 25 C -0.083 4.083 26 C 0.019 3.981 27 O -0.305 6.305 28 C -0.110 4.110 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.188 0.812 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.171 0.829 41 H 0.203 0.797 42 H 0.276 0.724 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.857 -4.702 -6.237 10.394 hybrid contribution 1.059 1.557 0.699 2.008 sum 7.915 -3.145 -5.539 10.160 Atomic orbital electron populations 1.69979 1.06775 1.27862 1.50813 1.25397 0.95290 1.01300 0.94852 0.85858 0.78996 0.80643 0.78061 1.20868 1.20523 1.19694 1.21415 0.92514 0.91182 1.50927 0.93995 1.19246 0.87289 0.82622 0.97966 1.48035 1.44383 1.34606 1.04602 1.20246 0.92127 0.97059 0.86160 1.21589 0.93516 0.95011 0.93515 1.22089 1.00476 0.95725 0.98362 1.21913 0.92205 0.98798 0.98544 1.22438 0.99810 0.98156 0.98549 1.23170 0.96741 0.93398 0.95153 1.67516 0.99128 1.31046 1.22965 1.18500 0.80670 0.82412 0.85236 1.90719 1.36055 1.30946 1.88219 1.23207 1.03276 1.02155 0.92166 1.22145 0.96202 0.97243 0.89603 1.19916 0.98927 0.97708 0.93737 1.23231 0.93465 0.92883 0.96820 1.67682 1.24390 1.29064 0.98660 1.23709 0.94917 0.92947 0.96693 1.19305 0.97918 0.94814 0.86045 1.84798 1.51310 1.63497 1.30892 1.22374 0.98634 0.99705 0.90268 0.92450 0.94937 0.95104 0.89888 0.87574 0.84641 0.82667 0.81745 0.81210 0.84881 0.84134 0.82897 0.79738 0.72372 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.53 13.29 21.45 0.28 -48.25 16 2 C 0.03 1.64 5.46 84.65 0.46 2.10 16 3 Si 0.94 41.31 29.54 68.60 2.03 43.34 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.52 -25.99 9.23 25.60 0.24 -25.76 16 8 H 0.04 2.23 7.81 -2.91 -0.02 2.20 16 9 C 0.25 11.43 4.92 85.63 0.42 11.85 16 10 N -0.59 -24.84 2.44 -835.54 -2.04 -26.88 16 11 C 0.17 6.36 5.76 85.63 0.49 6.85 16 12 C 0.10 3.88 6.36 42.55 0.27 4.15 16 13 C -0.15 -5.02 9.57 22.36 0.21 -4.80 16 14 C -0.09 -2.56 10.18 22.47 0.23 -2.33 16 15 C -0.17 -4.50 10.11 22.36 0.23 -4.27 16 16 C 0.07 2.26 11.18 84.67 0.95 3.21 16 17 N -0.50 -19.29 10.27 -183.88 -1.89 -21.17 16 18 C 0.54 23.24 7.60 86.38 0.66 23.89 16 19 O -0.58 -26.57 15.81 -4.34 -0.07 -26.63 16 20 C -0.19 -7.17 8.62 23.62 0.20 -6.97 16 21 C -0.03 -1.01 9.48 23.84 0.23 -0.78 16 22 C -0.10 -2.88 5.88 -20.06 -0.12 -3.00 16 23 C 0.09 2.95 10.59 85.12 0.90 3.85 16 24 N -0.49 -14.76 10.34 -194.14 -2.01 -16.77 16 25 C 0.08 1.73 11.13 84.83 0.94 2.67 16 26 C 0.07 1.36 6.73 22.56 0.15 1.51 16 27 O -0.49 -7.47 13.52 -92.65 -1.25 -8.72 16 28 C -0.08 -1.90 9.89 22.87 0.23 -1.68 16 29 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.03 1.55 6.09 -2.39 -0.01 1.54 16 31 H 0.03 1.46 7.90 -2.39 -0.02 1.44 16 32 H 0.08 3.20 7.42 -2.39 -0.02 3.18 16 33 H 0.11 3.49 7.79 -2.39 -0.02 3.47 16 34 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.17 4.22 8.06 -2.91 -0.02 4.19 16 38 H 0.13 5.32 4.25 -2.91 -0.01 5.31 16 39 H 0.14 4.32 7.52 -2.91 -0.02 4.30 16 40 H 0.15 5.26 6.18 -2.91 -0.02 5.24 16 41 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.42 2.03 9.06 -74.06 -0.67 1.36 16 43 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -69.00 379.89 2.14 -66.86 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.39 Total: 27.73 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 6.69 Total: 10.50 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -5.65 Total: -113.07 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.32 Total: -35.36 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -69.00 2.14 -66.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179480548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.527 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds